LOC122345842 (gpsm1a,LOC107587727,LOC107595532,LOC107672581)


Basic Information

Item Value
gene id LOC122345842
gene name gpsm1a,LOC107587727,LOC107595532,LOC107672581
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20774399 ~ 20783388 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240327.1
CCCAGCACACAGGAAACCTGGGTGTGGAAGACAGGGAAGTCATCCTCATTTTGCTGGAATATAAGCCATTTTTTCCcgtatttactttctttttttaatgtttttaagattTGCAAGCCGTTCACTAACATGTACGTTTCAACCTTGGGGGAGAAAGGTCTGATTGTCATGTCTGCCAAGAAAATCATTTAGTGCCAGAGGCTGTGGCAATTGGTGTATGGCTGTTTTCAGATGAAGTCCCTGTAGAGAGCGCCTTTGTGAACTTtattgtttttggattttttgaaAAGGATAAAACtGGTAAGTCCCAGTCACCTCTAATGAGGTCTGCCCTTTCACTGTGCTCAGAGACCCCAGAAGCAGCGGCATGGAGAACCGGCGCTGCCAGCACCCTCAACAGCCCAATGCCCAGGCCCAAGAGGCCTCATCCGGGCCCCAGTCCTCCATGCCCCAGTCCCCTTTACTGTCTGGAGCCTCCTCCCTCATCTCCCTTACCCAGACAGAGGAGTTCTTTGACCTCATAGCCAGTTCCCAGAGCCGCAGACTGGATGACCAGAGAGCCAGTATAGGTGACCGTCTGGGCATCAGGATAGCACAGAACAATGTGGGACACTTGTGTGATGCATGTAGTCCACGGGAACCTAGTGATGAGTTTTTCAACATGCTCATAAAGTATCAGTCCTCCAGGATCAATGATCAGAGGTGCTCTTTGCCACCAGCACCAGACCCAGATGAAGACTTCTTCAGCCTTATTCAGAGGGTGCAATCCAAACGCATGGATGAACAACGGGTGTCTTTTCCTTCTGATGAAAAGGATGAAACAGACTTAAATTATAAGTCCAAACCCTCTGAGGGCTCAAGCTAGAGACTGTGGCACTTCTGATGTGACTTTCACAAAGTCTTCTGCAAACTCTGACTCTCTGGCTGCACATTTTAAGAGATCTTCCAAGGCTGGGTTTAGGGGGGGCGTAATataggtttattttaattagtgggACTATATCGTGTTGAAgtgtttcatgtttttacaGTCACCCTGAGTTACCCTGAGGTGAATCCAAACCCAACAGATGTGATTCAGAGGGAATGGAAACACTCACATGTTTGTATGTACCAATTGTTCTTTCACAAAAGTGTTTGTGCAGATCTTAAGCAAAGCAACGCCATGGAAAATGATTAACATGATGCTTTGCTTTCCAAGGATAATATTACTAACTACTGTCACACAACACAATATAGATCGGTGTGACAAACAACGACAGCACATGATCCCCAAACAGGTGCGTGTTCATTTAACTCAAGTGTAAAGTGTGTTTCAGCGCACACTGAATATGAATGAACTGATACCCAGCAGATGGGAGCGGTTGTATCTGAAGCTGTATGGC
>XM_043240328.1
ttaattaaatgaaacctTTATAGATGTCTTGTTGTTGAAAGAAAAGTAGTgcttaattaaattgtaaatgttattgaATATCTAGTGTCACAgtagccacaaaaaaaaacattaatttacccagttatttatttaccaaTCAGAATACCAAGTGATGTTCCTTGAACATCAACAAAGCatactagaatgatttctaaagggtTTATTTATTGCGATTCTACATACTGTTTCCCATACTTCGTCTCAGTTTAATTCACTAACAATACCGTAGTTTTATAACTGAATTGCTCAAGAAGCACTGCGTGGTGTTTCACgcccacatactgtacatttggcCACGTAGTATCCATTTCTGTGATTGAAACGCTTTAGCTCAATACTGCCCTCTTGAGCTTGAGGGAAGGTAGAGTGGGCTCTGCAGTGGACTCACACTGTCACACTTTGGTTCTGTCTAGGAAAGACAGACAATTGTTCTTCAGTTGTGTCAGCTACATGAGCACATCTCTCCTTCTCCTCGGGACTGCCTCTGTTCTGTGTTCTGGAGTTCGACTTTCTCTCCTCGGTTTCTGCTGGATCTCCATTCGTAGACTGCGTAAGGCTTTGGATAGACCCCAGAAGCAGCGGCATGGAGAACCGGCGCTGCCAGCACCCTCAACAGCCCAATGCCCAGGCCCAAGAGGCCTCATCCGGGCCCCAGTCCTCCATGCCCCAGTCCCCTTTACTGTCTGGAGCCTCCTCCCTCATCTCCCTTACCCAGACAGAGGAGTTCTTTGACCTCATAGCCAGTTCCCAGAGCCGCAGACTGGATGACCAGAGAGCCAGTATAGGTGACCGTCTGGGCATCAGGATAGCACAGAACAATGTGGGACACTTGTGTGATGCATGTAGTCCACGGGAACCTAGTGATGAGTTTTTCAACATGCTCATAAAGTATCAGTCCTCCAGGATCAATGATCAGAGGTGCTCTTTGCCACCAGCACCAGACCCAGATGAAGACTTCTTCAGCCTTATTCAGAGGGTGCAATCCAAACGCATGGATGAACAACGGGTGTCTTTTCCTTCTGATGAAAAGGATGAAACAGACTTAAATTATAAGTCCAAACCCTCTGAGGGCTCAAGCTAGAGACTGTGGCACTTCTGATGTGACTTTCACAAAGTCTTCTGCAAACTCTGACTCTCTGGCTGCACATTTTAAGAGATCTTCCAAGGCTGGGTTTAGGGGGGGCGTAATataggtttattttaattagtgggACTATATCGTGTTGAAgtgtttcatgtttttacaGTCACCCTGAGTTACCCTGAGGTGAATCCAAACCCAACAGATGTGATTCAGAGGGAATGGAAACACTCACATGTTTGTATGTACCAATTGTTCTTTCACAAAAGTGTTTGTGCAGATCTTAAGCAAAGCAACGCCATGGAAAATGATTAACATGATGCTTTGCTTTCCAAGGATAATATTACTAACTACTGTCACACAACACAATATAGATCGGTGTGACAAACAACGACAGCACATGATCCCCAAACAGGTGCGTGTTCATTTAACTCAAGTGTAAAGTGTGTTTCAGCGCACACTGAATATGAATGAACTGATACCCAGCAGATGGGAGCGGTTGTATCTGAAGCTGTATGGC
>XM_043240329.1
CCCAGCACACAGGAAACCTGGGTGTGGAAGACAGGGAAGTCATCCTCATTTTGCTGGAATATAAGCCATTTTTTCCcgtatttactttctttttttaatgtttttaagattTGCAAGCCGTTCACTAACATGTACGTTTCAACCTTGGGGGAGAAAGGTCTGATTGTCATGTCTGCCAAGAAAATCATTTAGTGCCAGAGGCTGTGGCAATTGGTGTATGGCTGTTTTCAGATGAAGTCCCTGTAGAGAGCGCCTTTGTGAACTTtattgtttttggattttttgaaAAGGATAAAACtAGACCCCAGAAGCAGCGGCATGGAGAACCGGCGCTGCCAGCACCCTCAACAGCCCAATGCCCAGGCCCAAGAGGCCTCATCCGGGCCCCAGTCCTCCATGCCCCAGTCCCCTTTACTGTCTGGAGCCTCCTCCCTCATCTCCCTTACCCAGACAGAGGAGTTCTTTGACCTCATAGCCAGTTCCCAGAGCCGCAGACTGGATGACCAGAGAGCCAGTATAGGTGACCGTCTGGGCATCAGGATAGCACAGAACAATGTGGGACACTTGTGTGATGCATGTAGTCCACGGGAACCTAGTGATGAGTTTTTCAACATGCTCATAAAGTATCAGTCCTCCAGGATCAATGATCAGAGGTGCTCTTTGCCACCAGCACCAGACCCAGATGAAGACTTCTTCAGCCTTATTCAGAGGGTGCAATCCAAACGCATGGATGAACAACGGGTGTCTTTTCCTTCTGATGAAAAGGATGAAACAGACTTAAATTATAAGTCCAAACCCTCTGAGGGCTCAAGCTAGAGACTGTGGCACTTCTGATGTGACTTTCACAAAGTCTTCTGCAAACTCTGACTCTCTGGCTGCACATTTTAAGAGATCTTCCAAGGCTGGGTTTAGGGGGGGCGTAATataggtttattttaattagtgggACTATATCGTGTTGAAgtgtttcatgtttttacaGTCACCCTGAGTTACCCTGAGGTGAATCCAAACCCAACAGATGTGATTCAGAGGGAATGGAAACACTCACATGTTTGTATGTACCAATTGTTCTTTCACAAAAGTGTTTGTGCAGATCTTAAGCAAAGCAACGCCATGGAAAATGATTAACATGATGCTTTGCTTTCCAAGGATAATATTACTAACTACTGTCACACAACACAATATAGATCGGTGTGACAAACAACGACAGCACATGATCCCCAAACAGGTGCGTGTTCATTTAACTCAAGTGTAAAGTGTGTTTCAGCGCACACTGAATATGAATGAACTGATACCCAGCAGATGGGAGCGGTTGTATCTGAAGCTGTATGGC
>XM_043240330.1
attttaattaaatgaaacctTTATAGATGTCTTGTTGTTGAAAGAAAAGTAGTgcttaattaaattgtaaatgttattgaATATCTAGTGTCACAgtagccacaaaaaaaaacattaatttacccagttatttatttaccaaTCAGAATACCAAGTGATGTTCCTTGAACATCAACAAAGCatactagaatgatttctaaagggtTTATTTATTGCGATTCTACATACTGTTTCCCATACTTCGTCTCAGTTTAATTCACTAACAATACCGTAGTTTTATAACTGAATTGCTCAAGAAGCACTGCGTGGTGTTTCACgcccacatactgtacatttggcCACGTAGTATCCATTTCTGTGATTGAAACGCTTTAGCTCAATACTGCCCTCTTGAGCTTGAGGGAAGGTAGAGTGGGCTCTGCAGTGGACTCACACTGTCACACTTTGGTTCTGTCTAGGAAAGACAGACAATTGTTCTTCAGTTGTGTCAGCTACATGAGCACATCTCTCCTTCTCCTCGGGACTGCCTCTGTTCTGTAGACCCCAGAAGCAGCGGCATGGAGAACCGGCGCTGCCAGCACCCTCAACAGCCCAATGCCCAGGCCCAAGAGGCCTCATCCGGGCCCCAGTCCTCCATGCCCCAGTCCCCTTTACTGTCTGGAGCCTCCTCCCTCATCTCCCTTACCCAGACAGAGGAGTTCTTTGACCTCATAGCCAGTTCCCAGAGCCGCAGACTGGATGACCAGAGAGCCAGTATAGGTGACCGTCTGGGCATCAGGATAGCACAGAACAATGTGGGACACTTGTGTGATGCATGTAGTCCACGGGAACCTAGTGATGAGTTTTTCAACATGCTCATAAAGTATCAGTCCTCCAGGATCAATGATCAGAGGTGCTCTTTGCCACCAGCACCAGACCCAGATGAAGACTTCTTCAGCCTTATTCAGAGGGTGCAATCCAAACGCATGGATGAACAACGGGTGTCTTTTCCTTCTGATGAAAAGGATGAAACAGACTTAAATTATAAGTCCAAACCCTCTGAGGGCTCAAGCTAGAGACTGTGGCACTTCTGATGTGACTTTCACAAAGTCTTCTGCAAACTCTGACTCTCTGGCTGCACATTTTAAGAGATCTTCCAAGGCTGGGTTTAGGGGGGGCGTAATataggtttattttaattagtgggACTATATCGTGTTGAAgtgtttcatgtttttacaGTCACCCTGAGTTACCCTGAGGTGAATCCAAACCCAACAGATGTGATTCAGAGGGAATGGAAACACTCACATGTTTGTATGTACCAATTGTTCTTTCACAAAAGTGTTTGTGCAGATCTTAAGCAAAGCAACGCCATGGAAAATGATTAACATGATGCTTTGCTTTCCAAGGATAATATTACTAACTACTGTCACACAACACAATATAGATCGGTGTGACAAACAACGACAGCACATGATCCCCAAACAGGTGCGTGTTCATTTAACTCAAGTGTAAAGTGTGTTTCAGCGCACACTGAATATGAATGAACTGATACCCAGCAGATGGGAGCGGTTGTATCTGAAGCTGTATGGC

Function

symbol description
gpsm1a Predicted to enable GTPase regulator activity. Orthologous to human GPSM1 (G protein signaling modulator 1).

NR:

description
PREDICTED: G-protein-signaling modulator 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240327.1 False 1385 mRNA 0.46 3 20781366 20783388
XM_043240328.1 True 1643 mRNA 0.44 4 20774402 20783388
XM_043240329.1 False 1336 mRNA 0.45 3 20781366 20783388
XM_043240330.1 False 1575 mRNA 0.44 3 20774399 20783388

Neighbor

gene id symbol gene type direction distance location
LOC122345098 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding upstream 35242 20733622 ~ 20739157 (+)
LOC122345824 LOC107740804,LOC107665032 coding upstream 96456 20664933 ~ 20677943 (+)
LOC122345840 cmlc1,LOC107095684,LOC103473836,LOC105934481,LOC102226792,LOC103150158,LOC103390188 coding upstream 394734 20378889 ~ 20379665 (+)
LOC122344786 gpsm1a,LOC107740834,LOC107595532,LOC107587727,LOC107672581 coding upstream 404159 20369045 ~ 20370240 (+)
LOC122345838 fam78aa,LOC107731022,LOC107672534,LOC107740833,LOC107552624,LOC107665027 coding upstream 462949 20308522 ~ 20311450 (+)
ak5l ak5l,LOC107731024,LOC107665022,LOC107740835,LOC107595531,LOC108255392,LOC108423692,LOC107672580 coding downstream 1473 20784861 ~ 20790622 (+)
LOC122344887 cmlc1,LOC107095684,LOC103473836,LOC105934481,LOC102226792,LOC103150158,LOC103390188 coding downstream 8816 20792204 ~ 20792978 (+)
ciz1b LOC107740837,LOC107595499,LOC107665018,LOC107688644 coding downstream 184415 20967803 ~ 20973466 (+)
surf4l surf4l,LOC107740812,LOC107688631,LOC107595501,LOC107665048,LOC100304967,LOC108423697,LOC103043297 coding downstream 190558 20973946 ~ 20980386 (+)
prdm12b prdm12,prdm12b,LOC107688643,LOC107665021,LOC107740838,LOC107731029,LOC108423597,LOC103042983 coding downstream 243462 21026850 ~ 21030937 (+)
G38118 ak5l,LOC107731024,LOC107740835,LOC107672580,LOC107665022,LOC107595531,LOC108423692 non-coding upstream 27519 20744558 ~ 20746880 (+)
G38114 NA non-coding upstream 65792 20338230 ~ 20708607 (+)
G38113 qsox2,LOC107740821,LOC107665046,LOC107552641,LOC107672576,LOC107731056,LOC107587664 non-coding upstream 66933 20326329 ~ 20707466 (+)
G38132 NA non-coding upstream 75374 20698347 ~ 20699025 (+)
G38107 LOC107740807,LOC107552623,LOC107665026,LOC107731020,LOC107672533 non-coding upstream 90012 20303698 ~ 20684387 (+)
G38199 NA non-coding downstream 155445 20938833 ~ 20943113 (+)
G38209 NA non-coding downstream 162957 20946345 ~ 20950998 (+)
LOC122345965 NA non-coding downstream 197639 20981027 ~ 20999088 (+)
G38297 NA non-coding downstream 506543 21289931 ~ 21425456 (+)
G38302 NA non-coding downstream 706279 21489667 ~ 21549253 (+)
G38094 olfm1a,LOC107672574,LOC107587661,LOC107552636 other upstream 212047 20558827 ~ 20562352 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other upstream 260483 20185035 ~ 20513916 (+)
LOC122345834 lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634 other upstream 357892 20407768 ~ 20416507 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other upstream 477177 20284617 ~ 20297222 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other upstream 622713 20143283 ~ 20151686 (+)
pappab pappab,LOC107665047,LOC107587665,LOC107667798,LOC107595518,LOC107731007,LOC107740823 other downstream 32033 20815421 ~ 20888271 (+)
cntrl cntrl,LOC107740813,LOC107665016,LOC107688625,LOC107731033,LOC107587713 other downstream 263552 21046940 ~ 21069517 (+)
tecta tecta,LOC107665015,LOC107688634,LOC106603728 other downstream 301560 21084948 ~ 21120840 (+)
LOC122345215 specc1,LOC107712164,LOC107665038,LOC107731042,LOC107688619,LOC107587672 other downstream 397056 21180444 ~ 21260715 (+)
adora2b adora2b,LOC107712140,LOC107665025,LOC107595487,LOC107688642,LOC107731023,LOC107587731 other downstream 478166 21261554 ~ 21270874 (+)

Expression


Co-expression Network