LOC122345916


Basic Information

Item Value
gene id LOC122345916
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19954455 ~ 19960667 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240450.1
GCTGACTCCCAAATGGCACAATTCTCTAGATAGTGTTTTCACGCGTAAAGGCAGCCTCATTCTGCTGGATGGAAACAACGCTGTGGAAATCTATGAAGCCAACAAGTCAAGCCGGCCAGCGATCAGAGGACGGTTGAGTGACTTGTACCTTCCTGCTATCACAGGACCAATGTCAAACCTGCAGACAGCAAGGGCCAGACTCAGTCACTCATGTCCTTATCTCAGCACCAGCAGACGCCGCGGCTCCACCTCCTCTATCAACTCACAGAGAGCTCCTGACTTCGGCAGCAAGCAGGCGAGCGGGCTCTGACTCTGTTGACAGATTATGCCGAAGCTTTGAACCAGTCTGTTGAGTGTTGAGTTATAAGTTTCAGTTGGTCTCTATGACTGATAGTCTCTGTGAGCGTTTCAGAAGTGTTTTAGAGCATCTTCACTGCCGTATTTGTTAGAGATGTGCCTTCTTCGTCACCTAAACGGTTCCTGAAAGAGTTGCATGTGAAGAATATTTGACGTCTGTCTTCTAGAGTTACCTCAAAGCAcagaaagagtccaagaagtcaAATGTGACTGTGACAATGACATACCTGGGGCAGGGGCTTCCTGGCAGCACTCAGGATGAGATGAAAGTGCTTCAACAGATCTGTGGAGGAGAGAACATCTGTGTGTTTAAAGGATTTGTTCAACCTGGAGAGCAATTTCAGTTCACATCCCAGAGGCACCTGGGCTTCCCCTTCAGCGCTACCATCTTTGTGAATGGAATCATAGCAGCCAGGATCAGTTCCTGCTGCGAGTATAGATACACCCCTGGGTTTCAGCAAGGCCGCAGCAGCTGCTTCAGGCTGACCCGTCTAAACGGAGGAAAACCCTGCTTCAAATGTGTGAATTCAAGGCACGGTATTGGCACCCCAGCGATCAATAGTCCAGCTCCAGCCCTGCAACAAGCCATCAATCCTAATGAAGGTGTTATGGAGTCGTGCCCTTCTTCCCCTTTGTTCGTCCCTCTTGGAATGGAAAGGTCAGTGCAGAACTCCAGAAAGCTCTCTAAAGATGGAGGTGCTTTATCAACAGACAGTGAAGACGCGAATGGCAgcgcaaaagaaagaaaacgtcACAAACGCCTTCAACGACCACGCAGCCAGCAAGGAGAGGGCAAAGGTTTCGAAGAATCGCAAGcgaataaaaaggaaaacaaaccaCCTTCCAACACCAGAGAACAACTGCAAACATCAGCAAAAGAACATGCGGTGGAAAAAAAGAATTCAgtgaccaaaaataaaattaaagtggCAGacaGCACTATCAGGACAGTTGCATTTCTCAAGATTCATTGCAGGAAGGAAAAACCTTGACTAAGCGCGACGGCGAGAAAACGATGGATGCTTCGAAATCGAATGGAAAAAGCAGCAACAGGGGAAGACTGAGGGACTTCTATGAAGAATGTGTTGAAATGAGCACAGGTCTGGAGTCAGGCCTAGACCAACAGAGGTGGTTCAAAGTAAACAAGTTTGAGAGGAACAAAATCAAAGAGCGGATCACTTCAGGAATCAGTGCCAATAGCTCGGCATCAGAAGTAGAACTTAGTGAGGAAAGTGACAGCAGTTTTACAGGAGCAAGGAAGCCTAAAACTAATAACCAAGGTCCAGGGGATGCTACATCTGAGGAGcaagatttacaaaaacaaATGGATGCCATGAGAGAAGTCCTGAGCAATTCTGATGAAGTGGATCAACTAATATTGAGAAACACAGGTCTAACTGATGAACTGCTGAGGAGTTTGGCAACGGCGCTCAAGAGAAGCCCATCTGAAGTCACAGTGATTAACCTTAATCTGAACCAAATCGGACCCCCTGGAGTCAATGTTTTACTAGACCTTGTGCAAGCCAAACCGCAGATCAAAGAACTACTATTGTTTGGAAACCAACTTGGCGATCTTGGAGTGCAGACACTGCTTAGTGGATTGGCTGAACTTCAAGACAAAACAGCAACACTGCGTGGAAACTCTGAAACAATCCACTTCTCTCCAGTAAGCATCGTGATCAAAGAGTTAGACCTAGGTGGAAACGGCATTGGCAGTGACGGCCTGAGGGTGCTGGCCACTTTTATGAGGTATCATTCCCACCTTCAGTATCTGGGCCTGGCACAGACATCATGTTCAGACACAGAGGCTTGGACAGTCTTGTTTGAAAGCCTGAAAGTGAACACTACGCTGACACACATCATCTTAGATGAAAGCAACCTCGGGGACAATGGTATCAAGCTGTTTGCTGAGGCACTGAGATCAAATAAGACCCTGAGGAAGGCAGACTTGGACAATAATGGTTTCGGCGAAGTTGGAGGACATTATCTCCTGGAGGCTCTTCGCTCTGGAGGGAAACATTCCCTCGAGAACCTCAGCCTGGAGGGGAACTACATCAGCACCGCACTGATGGCAAACATACAGCAGGAGCTCGAATCTAACACACCAGCTTCTCTGTAAACTGAGATGTATCATCAGTTAACTAGTGCTTTGCAACTCAAACTTCTGGCAGGACGTACAGTAAATAAGCCTGACGTCTTCAGTGCAGGACAGAGGGAAAAACTTTGTGGCCAGCACGTGGGTGGCTTCCAATAATTCTAAATGAATTGCTTTATTCGGTGATCCATCTATTCGGGAGTTTAAACAGTGGAGGCAAAACTTTAGAGAAATATTTGCTTGGGCTCTTGACCCGGTCTTTACGCCACAAGCCAACAGATTCTCCCACTCATGTCTTTGAAGTTTGTGAATTGTCCGTGCATCTGGAAGGTGAGATGTTCATTTGGGTTGAGGGAAATTTGAGACGCACCTTTTTTTTGGATTATATGTAAACTGAGCTGACCAGAAAAATAGTCCTTGATCAGAGTTTGCCTTAGTATCTCATTGAAATTTGTTGTAAGTCTGTTATATTCATTAGGTTACCATCTTTCCTGTTGCTTCTGGTTTAAAAGATAAGAACAGACCTTTAGATATCAGGTGTTATTTTCACACATTCAGTGCATCCATCCTACCAAAGaagttattaaaagtaaattcagGAAATGTATTGTCAGACATGTTGATTATGTTGTTCATAAATGATGAGATGGATGAAAAGTTGATGAAAACTACTTTTGGATGTAAAAATAACTTCTAATACTTAAGagatattatttgttttatgtgcTGTCACCCCCTGACCCACATCCATCAAAGCTGAcagtaaataaaagcataaaagtgtcatttttgggaCAAATATTCACAGTGTGATATCTGAAAGTTTAGGCTAAACAATGTGGAACCTTTTTTCAGATGAATTACGCACGCTATTACTATTTTGTGTGATTTGACccttaactgaaataaaatttatcCAAATGAAATTGTTCCATGAATATATAACTCATAACCACGCTGGGGTCTTTTGTTGAAATCTTGAGTACAATGCCTTGATTCATAGACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240450.1 True 3459 mRNA 0.44 10 19954455 19960667

Neighbor

gene id symbol gene type direction distance location
LOC122346028 LOC107672526 coding upstream 89504 19860951 ~ 19864951 (+)
camsap1b LOC107720249,LOC107552625,LOC107672541 coding upstream 94295 19837755 ~ 19860160 (+)
notch1b LOC107720248,LOC107567148,LOC107699763,LOC107672539,LOC107745520 coding upstream 121601 19794796 ~ 19832854 (+)
adamtsl2 adamtsl2,LOC107699701 coding upstream 195174 19744545 ~ 19759281 (+)
LOC122344990 ttc16,LOC107699760,LOC107720230 coding upstream 220983 19726820 ~ 19733472 (+)
sh2d3cb sh2d3c,LOC107731039 coding downstream 78304 20038971 ~ 20047598 (+)
tor2a tor2a,LOC107699771,LOC107731016,LOC107552620,LOC107587655,LOC107672551 coding downstream 87458 20048125 ~ 20051547 (+)
inpp5e LOC107720240,LOC107552629,LOC107699774,LOC107672555,LOC107731045,LOC107587653 coding downstream 103033 20063700 ~ 20071214 (+)
LOC122345861 LOC107552612,LOC107576533,LOC107731014 coding downstream 119045 20079712 ~ 20095266 (+)
lhx6b si:ch211-236k19.2,LOC107731013,LOC107672524,LOC107580313 coding downstream 151653 20112320 ~ 20115838 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding upstream 80311 19873242 ~ 19874144 (+)
G37956 NA non-coding upstream 87057 19794443 ~ 19867398 (+)
G37951 NA non-coding upstream 194251 19759711 ~ 19760204 (+)
G37843 NA non-coding upstream 307380 19594070 ~ 19647075 (+)
G37734 NA non-coding upstream 666127 19288016 ~ 19288328 (+)
G38082 NA non-coding downstream 166734 20127401 ~ 20392624 (+)
G38091 LOC107699781,LOC107552636,LOC107587661,LOC107672574 non-coding downstream 210307 20170974 ~ 20552306 (+)
G38107 LOC107740807,LOC107552623,LOC107665026,LOC107731020,LOC107672533 non-coding downstream 343031 20303698 ~ 20684387 (+)
LOC122345857 NA non-coding downstream 359175 20319842 ~ 20320418 (+)
G38112 LOC107552640,LOC107740808,LOC107731062,LOC107665013,LOC107672520,LOC559520,LOC107587663 non-coding downstream 361993 20322660 ~ 20324555 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other upstream 244385 19707288 ~ 19710070 (+)
msh3 msh3,LOC107720281 other upstream 940355 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 1013560 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 1106781 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 2427011 17526024 ~ 17527444 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 6910 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 182616 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 224368 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 323950 20284617 ~ 20297222 (+)
LOC122345834 lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634 other downstream 447101 20407768 ~ 20416507 (+)

Expression


Co-expression Network