ass1 (ass1,LOC107740768,LOC107687233,LOC107689608)


Basic Information

Item Value
gene id ass1
gene name ass1,LOC107740768,LOC107687233,LOC107689608
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30622204 ~ 30644747 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240478.1
GGCGGGGCTGAGCGCATGTGGGTAATAACGGAGCACGCGGACTCGAGAGGATCAACTGGATGTGGATCTGATCCGGTCTCGTCTGGTCTGTGTCTCGCTTTTCTTTCCTGCTGGGTTTAGCTTCCTGATTTTGAAACTTTAGCCCGGTCCCTGAATCTCCGTCCCTCACAGAAGCGGTCAGATGTCGAAGGGCTCGGTGGTTCTGGCCTACAGCGGGGGTCTGGACACCTCCTGTATCCTGCTGTGGCTGAAGGAGCAGGGCTATGAAGTCATCGCTTACCTGGCCAACATCGGGCAGAACGAGGACTTTGATGCTGCGCGGAAGAAAGCAGAGAAACTTGGAGCcaagaaggtgttgaTCGAGGACCTGCGCTCAGAGTTTGTGGAGGAGTTCGTGTGGTCAGCGGTGCGGGCCGGAGCGGTGTATGAGGACCGTTACCTGCTGGGCACGTCTCTGGCCCGTCCCTGCATCGCCCGCAGACAGGTGCAGGTCGCCCGGAGAGAAGGAGCGCAGTACGTCTCCCACGGAGCCACGGGGAAGgggAATGACCAGGTCCGCTTCGAGCTGGCGTGTTACTCTCTCTATCCTTCGGTTCAGGTCATCGCTCCGTGGAGGATCCCAGAGTTTTACCAGCGCTTCCGAGGCCGGAGCGACCTGATGGAGTACGCAGAGaaaCACGGTATCCCCGTCCCTGTGAGTCCGAAGGCGCCGTGGAGCATGGACGCAAACCTCATGCACATCAGTTACGAGTCTGGAGTTCTGGAGAATCCCAAGAATCACGCGCCTCCAGATCTCTACCAGATGACCAAGAACCCGGAAGACGCCCCCGAGGAGCCAGACGTGCTGGAGATCCACTTCTCCAAAGgtgttCCAGTCAGAGTCAGTCATGTGAAGGAGGGAGTGTGTAAAGAGACTCCGCTGGAGATCTTCTGCTATCTGAATGAGATCGGTGGAAAGCACGGTGTGGGGAGAATCGATATTGTGGAGAACCGCTTCATTGGCATGAAGTCCAGAGGTATCTACGAAACCCCCGGAGGAACCATCCTGCTTCATGCTCATCTGGACATCGAGGCCTTCACGATGGACCGAGAGGTTCGGAAGATCAAACAGAGCCTCAGCATCAAGTTCTCCGAGCTCGTGTATAACGGGTTCTGGTTCAGTCCGGAGTGTGAGTTTGTCCGTCACTGTGTGGATAAATCCCAGGAGAACGTGGAGGGGTGTGTGCAGCTCTCCGTCTTCAAGGGTCAGGTGTACATCCTCGGCCGAGAGTCACCCACATCCCTGTATAACGAGGAGCTGGTCAGCATGGATGTTCAGGGAGACTATGACCCCTGCGACGCCTCTGGATTCATCCGGGTCAACGCCGTCAGGCTTCGGGAACACAACCGTCTGCAGGGAGAAGCCCTGAAGAAGCCCTGAAGATCTGATCCACGTCATTCAGTCAGCCGTTTCTGAGCGTGTACCGGTCTCTGAAGAAATCTGATTAAACACCAAACCCATA
>XM_043240479.1
GTGTCCGGGGGGCGGGGCTGAGCGCATGTGGGTAATAACGGAGCACGCGGACTCGAGAGGATCAACTGGATGTGGATCTGATCCGGTCTCGTCTGGTCTGTGTCTCGCTTTTCTTTCCTGCTGGGTTTAGCCCGGTCCCTGAATCTCCGTCCCTCACAGAAGCGGTCAGATGTCGAAGGGCTCGGTGGTTCTGGCCTACAGCGGGGGTCTGGACACCTCCTGTATCCTGCTGTGGCTGAAGGAGCAGGGCTATGAAGTCATCGCTTACCTGGCCAACATCGGGCAGAACGAGGACTTTGATGCTGCGCGGAAGAAAGCAGAGAAACTTGGAGCcaagaaggtgttgaTCGAGGACCTGCGCTCAGAGTTTGTGGAGGAGTTCGTGTGGTCAGCGGTGCGGGCCGGAGCGGTGTATGAGGACCGTTACCTGCTGGGCACGTCTCTGGCCCGTCCCTGCATCGCCCGCAGACAGGTGCAGGTCGCCCGGAGAGAAGGAGCGCAGTACGTCTCCCACGGAGCCACGGGGAAGgggAATGACCAGGTCCGCTTCGAGCTGGCGTGTTACTCTCTCTATCCTTCGGTTCAGGTCATCGCTCCGTGGAGGATCCCAGAGTTTTACCAGCGCTTCCGAGGCCGGAGCGACCTGATGGAGTACGCAGAGaaaCACGGTATCCCCGTCCCTGTGAGTCCGAAGGCGCCGTGGAGCATGGACGCAAACCTCATGCACATCAGTTACGAGTCTGGAGTTCTGGAGAATCCCAAGAATCACGCGCCTCCAGATCTCTACCAGATGACCAAGAACCCGGAAGACGCCCCCGAGGAGCCAGACGTGCTGGAGATCCACTTCTCCAAAGgtgttCCAGTCAGAGTCAGTCATGTGAAGGAGGGAGTGTGTAAAGAGACTCCGCTGGAGATCTTCTGCTATCTGAATGAGATCGGTGGAAAGCACGGTGTGGGGAGAATCGATATTGTGGAGAACCGCTTCATTGGCATGAAGTCCAGAGGTATCTACGAAACCCCCGGAGGAACCATCCTGCTTCATGCTCATCTGGACATCGAGGCCTTCACGATGGACCGAGAGGTTCGGAAGATCAAACAGAGCCTCAGCATCAAGTTCTCCGAGCTCGTGTATAACGGGTTCTGGTTCAGTCCGGAGTGTGAGTTTGTCCGTCACTGTGTGGATAAATCCCAGGAGAACGTGGAGGGGTGTGTGCAGCTCTCCGTCTTCAAGGGTCAGGTGTACATCCTCGGCCGAGAGTCACCCACATCCCTGTATAACGAGGAGCTGGTCAGCATGGATGTTCAGGGAGACTATGACCCCTGCGACGCCTCTGGATTCATCCGGGTCAACGCCGTCAGGCTTCGGGAACACAACCGTCTGCAGGGAGAAGCCCTGAAGAAGCCCTGAAGATCTGATCCACGTCATTCAGTCAGCCGTTTCTGAGCGTGTACCGGTCTCTGAAGAAATCTGATTAAACACCAAACCCATA
>XM_043240481.1
CTGAGCGCATGTGGGTAATAACGGAGCACGCGGACTCGAGAGGATCAACTGGATGTGGATCTGATCCGGTCTCGTCTGGTCTGTGTCTCGCTTTTCTTTCCTGCTGGGTTTAGAAGCGGTCAGATGTCGAAGGGCTCGGTGGTTCTGGCCTACAGCGGGGGTCTGGACACCTCCTGTATCCTGCTGTGGCTGAAGGAGCAGGGCTATGAAGTCATCGCTTACCTGGCCAACATCGGGCAGAACGAGGACTTTGATGCTGCGCGGAAGAAAGCAGAGAAACTTGGAGCcaagaaggtgttgaTCGAGGACCTGCGCTCAGAGTTTGTGGAGGAGTTCGTGTGGTCAGCGGTGCGGGCCGGAGCGGTGTATGAGGACCGTTACCTGCTGGGCACGTCTCTGGCCCGTCCCTGCATCGCCCGCAGACAGGTGCAGGTCGCCCGGAGAGAAGGAGCGCAGTACGTCTCCCACGGAGCCACGGGGAAGgggAATGACCAGGTCCGCTTCGAGCTGGCGTGTTACTCTCTCTATCCTTCGGTTCAGGTCATCGCTCCGTGGAGGATCCCAGAGTTTTACCAGCGCTTCCGAGGCCGGAGCGACCTGATGGAGTACGCAGAGaaaCACGGTATCCCCGTCCCTGTGAGTCCGAAGGCGCCGTGGAGCATGGACGCAAACCTCATGCACATCAGTTACGAGTCTGGAGTTCTGGAGAATCCCAAGAATCACGCGCCTCCAGATCTCTACCAGATGACCAAGAACCCGGAAGACGCCCCCGAGGAGCCAGACGTGCTGGAGATCCACTTCTCCAAAGgtgttCCAGTCAGAGTCAGTCATGTGAAGGAGGGAGTGTGTAAAGAGACTCCGCTGGAGATCTTCTGCTATCTGAATGAGATCGGTGGAAAGCACGGTGTGGGGAGAATCGATATTGTGGAGAACCGCTTCATTGGCATGAAGTCCAGAGGTATCTACGAAACCCCCGGAGGAACCATCCTGCTTCATGCTCATCTGGACATCGAGGCCTTCACGATGGACCGAGAGGTTCGGAAGATCAAACAGAGCCTCAGCATCAAGTTCTCCGAGCTCGTGTATAACGGGTTCTGGTTCAGTCCGGAGTGTGAGTTTGTCCGTCACTGTGTGGATAAATCCCAGGAGAACGTGGAGGGGTGTGTGCAGCTCTCCGTCTTCAAGGGTCAGGTGTACATCCTCGGCCGAGAGTCACCCACATCCCTGTATAACGAGGAGCTGGTCAGCATGGATGTTCAGGGAGACTATGACCCCTGCGACGCCTCTGGATTCATCCGGGTCAACGCCGTCAGGCTTCGGGAACACAACCGTCTGCAGGGAGAAGCCCTGAAGAAGCCCTGAAGATCTGATCCACGTCATTCAGTCAGCCGTTTCTGAGCGTGTACCGGTCTCTGAAGAAATCTGATTAAACACCAAACCCATA

Function

symbol description
ass1 Predicted to enable argininosuccinate synthase activity. Predicted to be involved in arginine biosynthetic process; argininosuccinate metabolic process; and urea cycle. Predicted to act upstream of or within cellular amino acid biosynthetic process. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Is expressed in several structures, including DEL; ball; endoderm; forerunner cell group; and liver. Human ortholog(s) of this gene implicated in citrullinemia; classic citrullinemia; hepatocellular carcinoma; and melanoma. Orthologous to human ASS1 (argininosuccinate synthase 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000050 urea cycle biological_process
GO:0006526 arginine biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004055 argininosuccinate synthase activity molecular_function

KEGG:

id description
K01940 argG, ASS1; argininosuccinate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240478.1 True 1502 mRNA 0.56 15 30622204 30644737
XM_043240479.1 False 1490 mRNA 0.57 15 30622204 30644747
XM_043240481.1 False 1444 mRNA 0.56 15 30622204 30644730

Neighbor

gene id symbol gene type direction distance location
LOC122344972 NA coding downstream 41876 30576288 ~ 30580328 (-)
LOC122344973 NA coding downstream 79764 30540497 ~ 30542440 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding downstream 84289 30535834 ~ 30537915 (-)
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding downstream 98785 30520606 ~ 30523419 (-)
mbd2 mbd2,LOC107717343,LOC107565141,LOC108438699,LOC108260323,LOC105902559 coding downstream 110925 30491031 ~ 30511279 (-)
surf4 surf4,LOC107740232,LOC107689610,LOC105890423,LOC103376134 coding upstream 1539 30646286 ~ 30652310 (-)
surf2 surf2,LOC107740795,LOC107581206,LOC107743090 coding upstream 8416 30653163 ~ 30655957 (-)
ciz1a ciz1a,LOC107687257,LOC107571633,LOC107740230,LOC107689607 coding upstream 15372 30660119 ~ 30672096 (-)
golga2 golga2,LOC107658391 coding upstream 89357 30734104 ~ 30754940 (-)
LOC122344907 NA coding upstream 120884 30765631 ~ 30769907 (-)
G40701 NA non-coding downstream 31564 30590197 ~ 30590640 (-)
G40698 NA non-coding downstream 52104 30567251 ~ 30570100 (-)
G40672 NA non-coding downstream 56048 30565684 ~ 30566156 (-)
G40670 ythdc2 non-coding downstream 57827 30564117 ~ 30564377 (-)
G40684 NA non-coding downstream 103749 30516065 ~ 30518455 (-)
LOC122345983 NA non-coding upstream 64026 30708773 ~ 30710678 (-)
G40708 dnm1,LOC107568151,LOC107658356 non-coding upstream 75445 30720192 ~ 30725226 (-)
G40739 NA non-coding upstream 125967 30770714 ~ 30772024 (-)
G40751 hspa5,LOC107687227,LOC107567952 non-coding upstream 176378 30821125 ~ 30846878 (-)
G40762 NA non-coding upstream 221496 30866243 ~ 30919600 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 9063 30590843 ~ 30613141 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 528628 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 693529 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 967143 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 1132000 29460585 ~ 29490204 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 144886 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 172985 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 686602 31331349 ~ 31350449 (-)
apooa apoo other upstream 1057706 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 1076523 31721270 ~ 31722906 (-)

Expression


Co-expression Network