ubb (ubb,UBC,LOC107553588)


Basic Information

Item Value
gene id ubb
gene name ubb,UBC,LOC107553588
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15709979 ~ 15712715 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240509.1
CGGAAGGGGATCTTGTCATGTGACGTACCATAAACGTCACTCCCCTGGGTTTGTATAAATACAGTAGCTCTCCCGTATAGCAGCAGATTTTTCTACGAAGAAGAGGAAACGTACATTTACAGAAGACATAGCAGCGTTTACAAGCTTTTCTAAAAGatgcagATCTTTGTCAAAACACTCACTGGTAAGACCATCACCCTTGAAGTCGAGCCAAGTGACACCATTGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGAATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGCGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGAATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGCGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGAATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGCGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGAATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGCGACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGATTACAACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGTTCAGATGTTTAAACTGACTCATCTCAGAAATGGACACAATTCATTCAATATCCACTGTTCATGCACTCACCACTTTTGTCCCCTATTTTTTCCAATACTTTATTACTGAatgcagttacattttattatatatatacttttttttttttttttcacctgttttttttcatgttcaaaaagactaaataaaagcattgaaatgta

Function

symbol description
ubb Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to several human genes including UBC (ubiquitin C).
ubc Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBC (ubiquitin C).

NR:

description
ubiquitin and ribosomal protein S27a precursor, partial

GO: NA

KEGG:

id description
K08770 UBC; ubiquitin C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240509.1 True 1500 mRNA 0.48 3 15709979 15712715

Neighbor

gene id symbol gene type direction distance location
pigl pigl,LOC107746821,LOC107680910,LOC107552588,LOC107718344,LOC107676669,LOC107575753 coding upstream 4807 15684803 ~ 15705172 (+)
bcl7a LOC107552594,LOC107746817,LOC107680981,LOC107708648,LOC107553587,LOC107676671 coding upstream 141733 15564146 ~ 15568246 (+)
cfap251 LOC107746856,LOC107681387,LOC107577995 coding upstream 146221 15555922 ~ 15563758 (+)
LOC122344704 NA coding upstream 205373 15500502 ~ 15504606 (+)
LOC122345300 vcp,LOC107681079,LOC107708640,LOC103357444 coding upstream 238562 15463434 ~ 15471417 (+)
p2rx5 LOC107680863,LOC107746824,LOC107552584,LOC107676654,LOC107718329,LOC107553591 coding downstream 5151 15717866 ~ 15726181 (+)
shpk shpk,LOC107680869,LOC107553593,LOC107718345,LOC107736096 coding downstream 15716 15728431 ~ 15732835 (+)
LOC122344749 LOC107680837,LOC107552580,LOC107746822,LOC107680853,LOC107552581,LOC107746861,LOC107718347,LOC107676666 coding downstream 21221 15733936 ~ 15755185 (+)
trpv1 LOC107680853,LOC107552581,LOC107680837,LOC107552580,LOC107746822,LOC107746861,LOC107676666 coding downstream 36252 15748967 ~ 15755185 (+)
eral1 LOC107553595,LOC107676670,LOC107746830,LOC107680814,LOC107718331,LOC107552539 coding downstream 95096 15807811 ~ 15812017 (+)
G36948 NA non-coding upstream 62872 15643295 ~ 15647107 (+)
G36937 LOC107680951,LOC107553567,LOC107746860,LOC107552540,LOC107718342,LOC107676644 non-coding upstream 86686 15621825 ~ 15623293 (+)
G36918 LOC107746818,LOC107680961,LOC107552589 non-coding upstream 109818 15595448 ~ 15600161 (+)
G36926 NA non-coding upstream 126317 15578118 ~ 15583662 (+)
G36852 NA non-coding upstream 204226 15505174 ~ 15505753 (+)
G36984 NA non-coding downstream 262 15712977 ~ 15713194 (+)
G37023 NA non-coding downstream 100388 15813103 ~ 15814248 (+)
G37024 NA non-coding downstream 102138 15814853 ~ 15815065 (+)
G36993 NA non-coding downstream 109177 15821892 ~ 15823751 (+)
G37038 NA non-coding downstream 147044 15859759 ~ 15860103 (+)
G36640 NA other upstream 989492 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 1057068 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 1359988 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 1372214 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 1404675 14300043 ~ 14305304 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 679082 16391797 ~ 16395562 (+)
G37227 NA other downstream 761993 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 773905 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 1652134 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 1813309 17526024 ~ 17527444 (+)

Expression


Co-expression Network