wdr54 (wdr54,LOC107746838,LOC107552569,LOC107718338,LOC107676672,LOC107680694)


Basic Information

Item Value
gene id wdr54
gene name wdr54,LOC107746838,LOC107552569,LOC107718338,LOC107676672,LOC107680694
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 15921758 ~ 15927369 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240545.1
GATACTTCAGTTTGTAAAACGCTTGAGACACTCAGACCTTTGCGTCACTCCGTCCACCGCAGATTCTGTGACGTTCTACACACGTTTTCTCCGTCACTATGGATGCAAGAGACGCGAGACGGTGAAAGCTTGCTTACTACAATTAGCCTATATCCATAATACCAATTATCTGCCGTTGTTTGGTCTAATAACAGAAACGGCGTATGTCATCTTCATATTTGgagacatttatttcagtaacgTTATTTAGTCTGAAACGAAGAGGATTAACAGGAGAACCTATCAGCTGCTTTTATTCAGGAAACGCCGTCTCTAGTTGATAAAGTAAACAAGCGGCGCTCTTCTAAAAATGGCGAAAATGTACCACAAAGAGAAAAGCATTCAGATAAAGAGCAGCGCGTCGGCGCTCTACAACAACCTGAGCGTCCTGCGCATCGCGCCGCGGTGTCTCACCTATTTCACGGTGGTCCATGCAAACGTCGTAAACATGGTCAGCGCATCCTGGGACGGACTGAACTATTCCCACCGACAGCTGCAGTCTAAGGAGGGCAACGTGGCCACCAGCTCCTCGCTTATCATGCAGgcAGCCTGGTGTGTCCTGCCTTCAAGAGATCTCCTTGTTCTCACATCTCAGAAGGGGATCCAGATGTATGAATCAGATGGATCAATTATGGTCTATTGGCATGCACTGGACACACCAGAGACCCCTACTGCGAAGGCAGTGTTTGCACGAGGAATTGCAGCGGTGcgggaaaaatatatttgtgtggGGGTCTCATCTGGCTCAGTGCTAGTCTTTGACGTTCCCAATAAAGGCAGTAACATCACCCTGTCTGAGGTTTTGGAAGAACATAAAGAAGCAATCACAGACATGGCCTCTGAGTGCTCAGGCAGTCTGGAGTGCATTGCTGATTTAGTTAGTGCTGATGACTCTGGCCTCCTCTGTGTGTGGAAATCAGGAGAAGATTTTCAACTGCTCAACAAGATCCCTGGTTTTGACACGAGTTGTTCTTCGGTAAAACTCTGGAAGGGCACAGTCATCGCCGGCTATGGGACAGGACAGATTCGTCTGTATGAAGGGGTCACAGGTATACTGCATGCAGAGGTCAACGCTCATGCACGCTGGATCTACTCACTGGACATCGCTCCCTTCACTGGACTGCTGATCTCTGCAGCAGAAGACTCCTGGGTTAGAGTGTGGCATCTGAGCTTGACTCCAGAGACTAATAGCGTGGAGATTGAGCACATGTACAATGAGTGTGTGACTGATACACAGATCTGTGGAGCCAAGTTCTGTGACGGTGACGGCTACGCCTTTGCAGTGACCGGCTATGACTTGAGTGAGATCATCCGCTACACACAAGCCTAGTCAGGAATACAGCACGCACTTCTAAGACGTTCCCATCGGTCATAGGAGGATCGCCTGCAGAAGCGAGGTCATGTCTTGACAGTATAACGGTGAATATATTGCTGTACAGGTACGTGATAGGCAGGGCCAGGCTGGAGTGAGTGTTAGCCTAAAATCATCTTTTTAACATCTTAGGCACTAAAAAGCTACACTTGAACCAGATTACTGTGTTTAGCATGGTATGTCTACATGATTGCCGGTTGTGCTAAGTACAAAATACTCTTTGTGCTCTGATATTAACGTAAAATATGTAACACTGGTTAAACAGAACATGCAGATCTCAAAACAAGGGGTTGTACTTTTAGTGTTTTGCTTCACACGTAATGCATTTACTGAACAGTTTCTTTTACCTCATGAACAATTTTGGATGTGCAACTGAACCTGATGACATGTAATCATATTTGTGGTTCAAAATagtttgtaaaatgtatgaaatacaGGACTATTTTTTCCAAGCGGAATTATAATGTTCTTTATATTTGTCTAGAAACAAAAGCATTGTATCTATCTTGACGTGAAATcacgttttatattttgtgttgttgtcatagttttttttttgttgctattttctgtttctttgtaaaCAATTGTCAGTGAgaattcagcaaaaaaaagaaaaacacaaacaaacaaaaatacttgTTTATTGTGACTTTTATTGCAATTAGAAATGTGTGGCAGTAGATGGCAGTAGATCTTAtactttttctgaaacattttaaacgTTTGTAACTTTTAAGATCTGAATAAGCATATTTAATTCAAGCACAAGTCTGTTAAAGTGTACTCATTCATATAAAACATCTATGAAACATATCACAGAACATATTAGAACACAGTCAGCACTCATTtctattcaaaatgaaaaaatgcttaAGAGAATGTTTAAGCTGCCTAAATTGACCAGACGTTGTTTTCCTACTGACACGATGTCTTCTTTCCTAATGcattatatgtacatttatttgcattgtatttACAGTTCTTTGTAGATTCTGGACGCAAGTTACATTACCTTCAGCAAGGATAAAGGGAAAGTAAAAACcaagatattttaggcaatttagAACATACCAGGACACTATTAGGAAAAAGGGTGACCGCTATTATGGCCACCGTTTATTAAGGCATGAAGtgaatagaaaataatttaaatcagcTGCAAGACAAAAGTTTCTTTCTAGAGTAAAATTGTAAATTAGCAGCATTTTCATCCATGACTgtagttaaaaatgtatcacCATTAACATTTGTCCCTTTGTTTTAAGCTATAAAAGAGGGCATTGATTGTCAGATGTGTCCTTCGTGCACCTCATTTACGCTGTTTTCAGACTGTAATGTTTTGTTGCCATTTCATCTTTCATCTGTGCAGCTTTCTGTTTTTATAGGTCAAAGCAGAACACTAGAGATATGCAGATAAAATATCTACAATGCTCATTTGACCGTATTTTACCCATAATATTTATGTCCATGATTCTGTTGTTCCATCATAGCATTATCCACACATGACCTCTCTTTCCAGCTTGTTGCTGATAAAACCCCTTGGTCTCTTATGTAAGACTTTTAACTTTGTCCTATGGATGACACTGTGTGTGCCCTATATCTGTTATGAAGAGAGGGTGAATATCAATGTCACAGAGCGACAGATCTAATGGGTAGAGAATAGACTGCTGACCATCAAATTTGATGGTGTAGAGAAAGGGTCCAGAGAGCGTCAATGAGACCTCCACTGGCTGTGGGTTTAATGGAATTATGTAATGCTGCATGCAGCACTGGAGCACAGTGAGATGCGTTTAAGGTCATTGTGTTTAGTGGGATCTGTGGTAATAAAAACTATGGCTGGTCTACAGGCCATGTAAAATTCAATAGTGCTCTCCAGACACATCAGATCTGCTGGCTCCGGGATGGGGGTTTGGCGTTATGCAGTTTCAGAGAACACAAGATGCTTGTTTAATAAACTTAAGCCGACGTAAAATAAAGTCTGTATTTTCATATCA
>XM_043240546.1
GTGGATACTTCAGTTTGTAAAACGCTTGAGACACTCAGACCTTTGCGTCACTCCGTCCACCGCAGATTCTGTGACGTTCTACACACGTTTTCTCCGTCACTATGGATGCAAGAGACGCGAGACGGTGAAAGCTTGCTTACTACAATTAGCCTATATCCATAATACCAATTATCTGCCGTTGTTTGGTCTAATAACAGAAACGGCGTATGTCATCTTCATATTTGgagacatttatttcagtaacgTTATTTAGTCTGAAACGAAGAGGATTAACAGGAGAACCTATCAGCTGCTTTTATTCAGGACCATCCATCTGGACATGCTACAATCCGATTTAACGCAGCGCCACGCAACTAAACGCCGTCTCTAGTTGATAAAGTAAACAAGCGGCGCTCTTCTAAAAATGGCGAAAATGTACCACAAAGAGAAAAGCATTCAGATAAAGAGCAGCGCGTCGGCGCTCTACAACAACCTGAGCGTCCTGCGCATCGCGCCGCGGTGTCTCACCTATTTCACGGTGGTCCATGCAAACGTCGTAAACATGGTCAGCGCATCCTGGGACGGACTGAACTATTCCCACCGACAGCTGCAGTCTAAGGAGGGCAACGTGGCCACCAGCTCCTCGCTTATCATGCAGgcAGCCTGGTGTGTCCTGCCTTCAAGAGATCTCCTTGTTCTCACATCTCAGAAGGGGATCCAGATGTATGAATCAGATGGATCAATTATGGTCTATTGGCATGCACTGGACACACCAGAGACCCCTACTGCGAAGGCAGTGTTTGCACGAGGAATTGCAGCGGTGcgggaaaaatatatttgtgtggGGGTCTCATCTGGCTCAGTGCTAGTCTTTGACGTTCCCAATAAAGGCAGTAACATCACCCTGTCTGAGGTTTTGGAAGAACATAAAGAAGCAATCACAGACATGGCCTCTGAGTGCTCAGGCAGTCTGGAGTGCATTGCTGATTTAGTTAGTGCTGATGACTCTGGCCTCCTCTGTGTGTGGAAATCAGGAGAAGATTTTCAACTGCTCAACAAGATCCCTGGTTTTGACACGAGTTGTTCTTCGGTAAAACTCTGGAAGGGCACAGTCATCGCCGGCTATGGGACAGGACAGATTCGTCTGTATGAAGGGGTCACAGGTATACTGCATGCAGAGGTCAACGCTCATGCACGCTGGATCTACTCACTGGACATCGCTCCCTTCACTGGACTGCTGATCTCTGCAGCAGAAGACTCCTGGGTTAGAGTGTGGCATCTGAGCTTGACTCCAGAGACTAATAGCGTGGAGATTGAGCACATGTACAATGAGTGTGTGACTGATACACAGATCTGTGGAGCCAAGTTCTGTGACGGTGACGGCTACGCCTTTGCAGTGACCGGCTATGACTTGAGTGAGATCATCCGCTACACACAAGCCTAGTCAGGAATACAGCACGCACTTCTAAGACGTTCCCATCGGTCATAGGAGGATCGCCTGCAGAAGCGAGGTCATGTCTTGACAGTATAACGGTGAATATATTGCTGTACAGGTACGTGATAGGCAGGGCCAGGCTGGAGTGAGTGTTAGCCTAAAATCATCTTTTTAACATCTTAGGCACTAAAAAGCTACACTTGAACCAGATTACTGTGTTTAGCATGGTATGTCTACATGATTGCCGGTTGTGCTAAGTACAAAATACTCTTTGTGCTCTGATATTAACGTAAAATATGTAACACTGGTTAAACAGAACATGCAGATCTCAAAACAAGGGGTTGTACTTTTAGTGTTTTGCTTCACACGTAATGCATTTACTGAACAGTTTCTTTTACCTCATGAACAATTTTGGATGTGCAACTGAACCTGATGACATGTAATCATATTTGTGGTTCAAAATagtttgtaaaatgtatgaaatacaGGACTATTTTTTCCAAGCGGAATTATAATGTTCTTTATATTTGTCTAGAAACAAAAGCATTGTATCTATCTTGACGTGAAATcacgttttatattttgtgttgttgtcatagttttttttttgttgctattttctgtttctttgtaaaCAATTGTCAGTGAgaattcagcaaaaaaaagaaaaacacaaacaaacaaaaatacttgTTTATTGTGACTTTTATTGCAATTAGAAATGTGTGGCAGTAGATGGCAGTAGATCTTAtactttttctgaaacattttaaacgTTTGTAACTTTTAAGATCTGAATAAGCATATTTAATTCAAGCACAAGTCTGTTAAAGTGTACTCATTCATATAAAACATCTATGAAACATATCACAGAACATATTAGAACACAGTCAGCACTCATTtctattcaaaatgaaaaaatgcttaAGAGAATGTTTAAGCTGCCTAAATTGACCAGACGTTGTTTTCCTACTGACACGATGTCTTCTTTCCTAATGcattatatgtacatttatttgcattgtatttACAGTTCTTTGTAGATTCTGGACGCAAGTTACATTACCTTCAGCAAGGATAAAGGGAAAGTAAAAACcaagatattttaggcaatttagAACATACCAGGACACTATTAGGAAAAAGGGTGACCGCTATTATGGCCACCGTTTATTAAGGCATGAAGtgaatagaaaataatttaaatcagcTGCAAGACAAAAGTTTCTTTCTAGAGTAAAATTGTAAATTAGCAGCATTTTCATCCATGACTgtagttaaaaatgtatcacCATTAACATTTGTCCCTTTGTTTTAAGCTATAAAAGAGGGCATTGATTGTCAGATGTGTCCTTCGTGCACCTCATTTACGCTGTTTTCAGACTGTAATGTTTTGTTGCCATTTCATCTTTCATCTGTGCAGCTTTCTGTTTTTATAGGTCAAAGCAGAACACTAGAGATATGCAGATAAAATATCTACAATGCTCATTTGACCGTATTTTACCCATAATATTTATGTCCATGATTCTGTTGTTCCATCATAGCATTATCCACACATGACCTCTCTTTCCAGCTTGTTGCTGATAAAACCCCTTGGTCTCTTATGTAAGACTTTTAACTTTGTCCTATGGATGACACTGTGTGTGCCCTATATCTGTTATGAAGAGAGGGTGAATATCAATGTCACAGAGCGACAGATCTAATGGGTAGAGAATAGACTGCTGACCATCAAATTTGATGGTGTAGAGAAAGGGTCCAGAGAGCGTCAATGAGACCTCCACTGGCTGTGGGTTTAATGGAATTATGTAATGCTGCATGCAGCACTGGAGCACAGTGAGATGCGTTTAAGGTCATTGTGTTTAGTGGGATCTGTGGTAATAAAAACTATGGCTGGTCTACAGGCCATGTAAAATTCAATAGTGCTCTCCAGACACATCAGATCTGCTGGCTCCGGGATGGGGGTTTGGCGTTATGCAGTTTCAGAGAACACAAGATGCTTGTTTAATAAACTTAAGCCGACGTAAAATAAAGTCTGTATTTTCATATCA

Function

symbol description
wdr54 Orthologous to human WDR54 (WD repeat domain 54).

NR:

description
PREDICTED: WD repeat-containing protein 54

GO: NA

KEGG:

id description
K24749 WDR54; WD repeat-containing protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240545.1 False 3408 mRNA 0.41 10 15921761 15927369
XM_043240546.1 True 3462 mRNA 0.41 11 15921758 15927369

Neighbor

gene id symbol gene type direction distance location
aqp3a LOC107680708,LOC107746837,LOC107552570,LOC107718337,LOC107676667,LOC107553599 coding upstream 10880 15906315 ~ 15910878 (+)
mob1ba mob1ba,mob1b,LOC107680716,LOC103036920,LOC107553598,LOC107584591 coding upstream 36654 15878865 ~ 15885104 (+)
rufy3 rufy3,LOC107718333,LOC107676661,LOC107746833,LOC107552574,LOC107680746,LOC107553597 coding upstream 46442 15861054 ~ 15875316 (+)
tbx16l LOC107681481,LOC107746831,LOC107552576,LOC107553570 coding upstream 100024 15815277 ~ 15821734 (+)
eral1 LOC107553595,LOC107676670,LOC107746830,LOC107680814,LOC107718331,LOC107552539 coding upstream 109741 15807811 ~ 15812017 (+)
rhobtb4 rhobtb2a,LOC107552568,LOC107680668,LOC107746840,LOC107676653,LOC107718339,LOC107553600 coding downstream 23693 15951062 ~ 15978748 (+)
si:dkey-40c11.2 LOC107680639,LOC107552538,LOC107746841 coding downstream 58417 15985786 ~ 16014415 (+)
nos2a nos2a,LOC107553584,LOC107719931 coding downstream 148872 16076241 ~ 16083755 (+)
LOC122345915 hspb11,zgc:158640,LOC107746844,LOC107681463,LOC107719933,LOC107660270 coding downstream 160572 16087941 ~ 16088913 (+)
tmem8b tmem8b,si:dkey-84j12.1,LOC107553610 coding downstream 217525 16144894 ~ 16251772 (+)
G37047 NA non-coding upstream 2473 15918506 ~ 15919285 (+)
G37038 NA non-coding upstream 61655 15859759 ~ 15860103 (+)
G36993 NA non-coding upstream 98007 15821892 ~ 15823751 (+)
G37024 NA non-coding upstream 106693 15814853 ~ 15815065 (+)
G37023 NA non-coding upstream 107510 15813103 ~ 15814248 (+)
G37123 NA non-coding downstream 125663 16053032 ~ 16054008 (+)
G37155 NA non-coding downstream 168616 16095985 ~ 16097005 (+)
G37260 NA non-coding downstream 733152 16660521 ~ 16660743 (+)
G37286 NA non-coding downstream 860461 16787830 ~ 16812417 (+)
G37291 NA non-coding downstream 899756 16827125 ~ 16827476 (+)
G36640 NA other upstream 1201271 14718532 ~ 14720487 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other upstream 1268847 14645945 ~ 14652911 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other upstream 1571767 14347562 ~ 14349991 (+)
LOC122345214 NA other upstream 1583993 14333023 ~ 14337765 (+)
LOC122345142 NA other upstream 1616454 14300043 ~ 14305304 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other downstream 464428 16391797 ~ 16395562 (+)
G37227 NA other downstream 547339 16474708 ~ 16560732 (+)
G37228 ncor2,LOC107742750 other downstream 559251 16486620 ~ 16561741 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other downstream 1437480 17364849 ~ 17372859 (+)
LOC122345691 NA other downstream 1598655 17526024 ~ 17527444 (+)

Expression


Co-expression Network