LOC122346028 (LOC107672526)


Basic Information

Item Value
gene id LOC122346028
gene name LOC107672526
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19860951 ~ 19864951 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240662.1
TTACTTGTGGTCTCACGATGTACCTCCCAACTTCTGTCAACTGGAACGCCACAGGCCATGCCTCATCGACATGCACTGTATCCTTGACAGTCCACTGAAGACACATTTGTATCCTGGCAACTGGCGGTTTATCCTCAGCAGGGGACCCTACAGGTCAGGCATTCGGTGGATGGATGGTCATTAGACAAGAACTCAAGAGGACATTGTTATTTGATGTTTGTCAGTATGCGCGGTGAGTATTATTGCAATCTGGTTTGATGTTGACTTTAAAGTTAAGTAAATGTgatgaatgtttcttttttttcttctgcctagctctttttatttttgtggtgttCCAGTATATACGTGAGGCACGGTTTCAGTCCTGTATATACACAGAAACGGACTATGTTTGCAAAGAAATACCAAAAGATTATCCTGCAGATTTGACCTCTATGATTATCTTTGTGAGTGGTTTAGGAGACATCAGCTTGTCTATGTTTAACAGTACCAATCTGACCTCTGTGAACAGTCTGACTATGGCACACCAAGGTATCACAGCAATAGGACCGCAGACTTTTGATATGtttaaaaatctcaaaactcTCAATTTGGACAATAATCGCCTCTCTCAGGTCTCATCAAACTGGTTCAGCCATCATGTTACACTTGAGGCACTCAGACtctcaaataataaaatcactaGACTGGATTATAGTTCTCTTGTTGGGCTGTCAAACCTGCTCAACCTAGACTTGTCTCAGAACCAGGTTCACACTATTACCCCAAGAAGTTTTCTTGGTTTTAGTAAACTGAGACAGTTGAACCTGTCTAACAACAAACTAACACATTTGAGTATGGATGTGTTTCTTCCACTGAACGGCACAAAGATCTGCTTGGATGGAAATCCCTGGGATTGCTCATGCTCTGTGAATGACTTTGCCAAATACCTGAGAGGTCTGCAGAATGCCTCTCTTCTGGAGAATGACATGCTGGTGTGCTGCAATAGCCCTCCTGATTTGAAAGGTGTACCCTTATGGCAGGTACCAGAGTGTAAAACCCTCACATCCATGAGCCCTACCACTATGAGTCTTACCACTGGAAGTCCTGGCACCGGGAACCCTGCCACTGTATTAATAACCAAACCTCTTACAATTGGACAGTCGacttcaatcatttttattgTGGTACTGTGTGCCCTGGTACTTGTCGTCTGTGTCCTTTCAGCATTGTATCACAGGAAACGAGAGAGGAAACATCTACAGGCTGTAAAACCTGTTTCAGAGAAATCTGAAATGATCCGAAACAGCGAATCAGCTGCAAACAGCAatgaagaacacacacaaatcaaatcTAACATTGcgaataaaacacaaattgcCACAACAGGGGTGTTATTGAGGACAGATCAGATGGTGGTTGGAGATGAGAAGATATCACAGATATACCATATTTATTCATCAGGGACATATGACACCAGAGAATCCATTAAACGAGTGAGATCTGCTGGGCCGGTCTTGTGCCAGATGGAGATGTTTTCTAAACCCGCAGAAGTGGCCACTGATGAAGTTGGGGTAAGCAATGATGAGTATTACAATGGATGGATAACCTCAGAAAAAACAAAGgataatgtgtgtgttaattttgAGAAGTTGGAGGATGGTAGAAACTTTGCAGATGAAGAGATAGAGGGGTCCTCTGAGGTAAGTAACACCTCTGACACACTGGAATCACACAAGgaccttaaagaaaaaattGAAGATACTGATGAGAGTGTCCGAGCCTCAACAAGTGTAAATGAAGAGGCTGTTCAGCATGGTGTAGAGAACAATGTGTTGGATCACCTGAATGAGTTGGCCATAGGAGCAGAAAGCAGTCAAGATGTTCTCCAGATAACACACGTTACATCCCAGACAGAGGAGACTGATGAAAACCTGCCGTACCTCACGATTGGTGCTGGTCCAGAAAACCAGACCTCTGGGGTTGATCAGAATACCATTAAAGAAACATCCGGACCTTCAAGACCTTTCCGGCGGGTACTGACCTGGCCTCCAACTGCGGCCCAGTGGAAGAAGCAATGGGCTCAAAATCAACAAGTCCTCAATGTGTTCCCACAACTAATATTTGTAGCAGCTTGCAGGCATGATATCAGACCATATCCACCAAGCATTTCTCCTGCAATCTTCCCAACTGCCCCGCAGTTCACTGCACTGGAGTTTCTGCCTGAAATCACGTCCCCAATGGAAGATGTCAGAATCACTATTGATGAGGACAATTACAGGGCAAGTCTTGAGTCATCCAATCAAAGAGTCCTGCATTTCAGTGCAAAAGAATGCTTCTCTAATACTAATATACCACCAAGGGAGGATGGCAGAATTATTACAAATGGGGAAACTTGGATGTCAGGTCTTGAGTCAAACGTCTTTTCTGATTTGCCCTCCAAGAACTCTGCAATTGATGAAAGTGAGGTCTGCTCTGAATTGTTCAGCATTTTTAATCCATCATTTGATGGCAGCAAGTCAAAGTCTGGTTTTGGAGAGGAGATAAACAACCAAGATGATATTGACAAAATGCTGAGCATGAAAACAAAAGTGAACAGATTTCACCAAAGAGAGCAGGTTGAGTTAGAATTGCAGAAGCAGTCCAGGAGAGCAGGGAAAGCTGCAGAGAGAGCTCAGAGAGACCGACGGCAGGGTCAGATGTGTGAAGGCTCCGACTCGAGAGCACCCCCTGCAGGCGGTTCTCCAAAAGATGACAGCCTCTTGCTGGGAAATGAGTACACCTTTATAGACCTGCTACACGAGGTGACAGAAAATCATGGGCGATGGACCAGAGACAGATGGAGAcaaactcaaaaaaacaaacaaaagctcaAACAGAGTCGTTAGGTACTGGAAATACGCATCTAAATGCACAATTGTTGAACAAttctctatataaatataaaaaaagatctaAAAATAATCAGTTCTTCTGCTCTGTAAGATGAAACCTGCAAAACGCactgtaaaatatgcaaaaatctaATAATGGATTTATAATGgctataatgttttttttgttgttgtttttttttactacattgttaagtgcaaaa
>XM_043240663.1
GCTGTGTAATTACTTGTGGTCTCACGATGTACCTCCCAACTTCTGTCAACTGGAACGCCACAGGCCATGCCTCATCGACATGCACTGTATCCTTGACAGTCCACTGAAGACACATTTGTATCCTGGCAACTGGCGGTTTATCCTCAGCAGGGGACCCTACAGGTCAGGCATTCGGTGGATGGATGGTCATTAGACAAGAACTCAAGAGGACATTGTTATTTGATGTTTGTCAGTATGCGCGctctttttatttttgtggtgttCCAGTATATACGTGAGGCACGGTTTCAGTCCTGTATATACACAGAAACGGACTATGTTTGCAAAGAAATACCAAAAGATTATCCTGCAGATTTGACCTCTATGATTATCTTTGTGAGTGGTTTAGGAGACATCAGCTTGTCTATGTTTAACAGTACCAATCTGACCTCTGTGAACAGTCTGACTATGGCACACCAAGGTATCACAGCAATAGGACCGCAGACTTTTGATATGtttaaaaatctcaaaactcTCAATTTGGACAATAATCGCCTCTCTCAGGTCTCATCAAACTGGTTCAGCCATCATGTTACACTTGAGGCACTCAGACtctcaaataataaaatcactaGACTGGATTATAGTTCTCTTGTTGGGCTGTCAAACCTGCTCAACCTAGACTTGTCTCAGAACCAGGTTCACACTATTACCCCAAGAAGTTTTCTTGGTTTTAGTAAACTGAGACAGTTGAACCTGTCTAACAACAAACTAACACATTTGAGTATGGATGTGTTTCTTCCACTGAACGGCACAAAGATCTGCTTGGATGGAAATCCCTGGGATTGCTCATGCTCTGTGAATGACTTTGCCAAATACCTGAGAGGTCTGCAGAATGCCTCTCTTCTGGAGAATGACATGCTGGTGTGCTGCAATAGCCCTCCTGATTTGAAAGGTGTACCCTTATGGCAGGTACCAGAGTGTAAAACCCTCACATCCATGAGCCCTACCACTATGAGTCTTACCACTGGAAGTCCTGGCACCGGGAACCCTGCCACTGTATTAATAACCAAACCTCTTACAATTGGACAGTCGacttcaatcatttttattgTGGTACTGTGTGCCCTGGTACTTGTCGTCTGTGTCCTTTCAGCATTGTATCACAGGAAACGAGAGAGGAAACATCTACAGGCTGTAAAACCTGTTTCAGAGAAATCTGAAATGATCCGAAACAGCGAATCAGCTGCAAACAGCAatgaagaacacacacaaatcaaatcTAACATTGcgaataaaacacaaattgcCACAACAGGGGTGTTATTGAGGACAGATCAGATGGTGGTTGGAGATGAGAAGATATCACAGATATACCATATTTATTCATCAGGGACATATGACACCAGAGAATCCATTAAACGAGTGAGATCTGCTGGGCCGGTCTTGTGCCAGATGGAGATGTTTTCTAAACCCGCAGAAGTGGCCACTGATGAAGTTGGGGTAAGCAATGATGAGTATTACAATGGATGGATAACCTCAGAAAAAACAAAGgataatgtgtgtgttaattttgAGAAGTTGGAGGATGGTAGAAACTTTGCAGATGAAGAGATAGAGGGGTCCTCTGAGGTAAGTAACACCTCTGACACACTGGAATCACACAAGgaccttaaagaaaaaattGAAGATACTGATGAGAGTGTCCGAGCCTCAACAAGTGTAAATGAAGAGGCTGTTCAGCATGGTGTAGAGAACAATGTGTTGGATCACCTGAATGAGTTGGCCATAGGAGCAGAAAGCAGTCAAGATGTTCTCCAGATAACACACGTTACATCCCAGACAGAGGAGACTGATGAAAACCTGCCGTACCTCACGATTGGTGCTGGTCCAGAAAACCAGACCTCTGGGGTTGATCAGAATACCATTAAAGAAACATCCGGACCTTCAAGACCTTTCCGGCGGGTACTGACCTGGCCTCCAACTGCGGCCCAGTGGAAGAAGCAATGGGCTCAAAATCAACAAGTCCTCAATGTGTTCCCACAACTAATATTTGTAGCAGCTTGCAGGCATGATATCAGACCATATCCACCAAGCATTTCTCCTGCAATCTTCCCAACTGCCCCGCAGTTCACTGCACTGGAGTTTCTGCCTGAAATCACGTCCCCAATGGAAGATGTCAGAATCACTATTGATGAGGACAATTACAGGGCAAGTCTTGAGTCATCCAATCAAAGAGTCCTGCATTTCAGTGCAAAAGAATGCTTCTCTAATACTAATATACCACCAAGGGAGGATGGCAGAATTATTACAAATGGGGAAACTTGGATGTCAGGTCTTGAGTCAAACGTCTTTTCTGATTTGCCCTCCAAGAACTCTGCAATTGATGAAAGTGAGGTCTGCTCTGAATTGTTCAGCATTTTTAATCCATCATTTGATGGCAGCAAGTCAAAGTCTGGTTTTGGAGAGGAGATAAACAACCAAGATGATATTGACAAAATGCTGAGCATGAAAACAAAAGTGAACAGATTTCACCAAAGAGAGCAGGTTGAGTTAGAATTGCAGAAGCAGTCCAGGAGAGCAGGGAAAGCTGCAGAGAGAGCTCAGAGAGACCGACGGCAGGGTCAGATGTGTGAAGGCTCCGACTCGAGAGCACCCCCTGCAGGCGGTTCTCCAAAAGATGACAGCCTCTTGCTGGGAAATGAGTACACCTTTATAGACCTGCTACACGAGGTGACAGAAAATCATGGGCGATGGACCAGAGACAGATGGAGAcaaactcaaaaaaacaaacaaaagctcaAACAGAGTCGTTAGGTACTGGAAATACGCATCTAAATGCACAATTGTTGAACAAttctctatataaatataaaaaaagatctaAAAATAATCAGTTCTTCTGCTCTGTAAGATGAAACCTGCAAAACGCactgtaaaatatgcaaaaatctaATAATGGATTTATAATGgctataatgttttttttgttgttgtttttttttactacattgttaagtgcaaaa
>XM_043240664.1
GTAATTACTTGTGGTCTCACGATGTACCTCCCAACTTCTGTCAACTGGAACGCCACAGGCCATGCCTCATCGACATGCACTGTATCCTTGACAGTCCACTGAAGACACATTTGTATCCTGGCAACTGGCGGTTTATCCTCAGCAGGGGACCCTACAGGTCAGGCATTCGGTGGATGGATGGTCATTAGACAAGAACTCAAGAGGACATTGTTATTTGATGTTTGTCAGTATGCGCGctctttttatttttgtggtgttCCAGTATATACGTGAGGCACGGTTTCAGTCCTGTATATACACAGAAACGGACTATGTTTGCAAAGAAATACCAAAAGATCTGCTTGGATGGAAATCCCTGGGATTGCTCATGCTCTGTGAATGACTTTGCCAAATACCTGAGAGGTCTGCAGAATGCCTCTCTTCTGGAGAATGACATGCTGGTGTGCTGCAATAGCCCTCCTGATTTGAAAGGTGTACCCTTATGGCAGGTACCAGAGTGTAAAACCCTCACATCCATGAGCCCTACCACTATGAGTCTTACCACTGGAAGTCCTGGCACCGGGAACCCTGCCACTGTATTAATAACCAAACCTCTTACAATTGGACAGTCGacttcaatcatttttattgTGGTACTGTGTGCCCTGGTACTTGTCGTCTGTGTCCTTTCAGCATTGTATCACAGGAAACGAGAGAGGAAACATCTACAGGCTGTAAAACCTGTTTCAGAGAAATCTGAAATGATCCGAAACAGCGAATCAGCTGCAAACAGCAatgaagaacacacacaaatcaaatcTAACATTGcgaataaaacacaaattgcCACAACAGGGGTGTTATTGAGGACAGATCAGATGGTGGTTGGAGATGAGAAGATATCACAGATATACCATATTTATTCATCAGGGACATATGACACCAGAGAATCCATTAAACGAGTGAGATCTGCTGGGCCGGTCTTGTGCCAGATGGAGATGTTTTCTAAACCCGCAGAAGTGGCCACTGATGAAGTTGGGGTAAGCAATGATGAGTATTACAATGGATGGATAACCTCAGAAAAAACAAAGgataatgtgtgtgttaattttgAGAAGTTGGAGGATGGTAGAAACTTTGCAGATGAAGAGATAGAGGGGTCCTCTGAGGTAAGTAACACCTCTGACACACTGGAATCACACAAGgaccttaaagaaaaaattGAAGATACTGATGAGAGTGTCCGAGCCTCAACAAGTGTAAATGAAGAGGCTGTTCAGCATGGTGTAGAGAACAATGTGTTGGATCACCTGAATGAGTTGGCCATAGGAGCAGAAAGCAGTCAAGATGTTCTCCAGATAACACACGTTACATCCCAGACAGAGGAGACTGATGAAAACCTGCCGTACCTCACGATTGGTGCTGGTCCAGAAAACCAGACCTCTGGGGTTGATCAGAATACCATTAAAGAAACATCCGGACCTTCAAGACCTTTCCGGCGGGTACTGACCTGGCCTCCAACTGCGGCCCAGTGGAAGAAGCAATGGGCTCAAAATCAACAAGTCCTCAATGTGTTCCCACAACTAATATTTGTAGCAGCTTGCAGGCATGATATCAGACCATATCCACCAAGCATTTCTCCTGCAATCTTCCCAACTGCCCCGCAGTTCACTGCACTGGAGTTTCTGCCTGAAATCACGTCCCCAATGGAAGATGTCAGAATCACTATTGATGAGGACAATTACAGGGCAAGTCTTGAGTCATCCAATCAAAGAGTCCTGCATTTCAGTGCAAAAGAATGCTTCTCTAATACTAATATACCACCAAGGGAGGATGGCAGAATTATTACAAATGGGGAAACTTGGATGTCAGGTCTTGAGTCAAACGTCTTTTCTGATTTGCCCTCCAAGAACTCTGCAATTGATGAAAGTGAGGTCTGCTCTGAATTGTTCAGCATTTTTAATCCATCATTTGATGGCAGCAAGTCAAAGTCTGGTTTTGGAGAGGAGATAAACAACCAAGATGATATTGACAAAATGCTGAGCATGAAAACAAAAGTGAACAGATTTCACCAAAGAGAGCAGGTTGAGTTAGAATTGCAGAAGCAGTCCAGGAGAGCAGGGAAAGCTGCAGAGAGAGCTCAGAGAGACCGACGGCAGGGTCAGATGTGTGAAGGCTCCGACTCGAGAGCACCCCCTGCAGGCGGTTCTCCAAAAGATGACAGCCTCTTGCTGGGAAATGAGTACACCTTTATAGACCTGCTACACGAGGTGACAGAAAATCATGGGCGATGGACCAGAGACAGATGGAGAcaaactcaaaaaaacaaacaaaagctcaAACAGAGTCGTTAGGTACTGGAAATACGCATCTAAATGCACAATTGTTGAACAAttctctatataaatataaaaaaagatctaAAAATAATCAGTTCTTCTGCTCTGTAAGATGAAACCTGCAAAACGCactgtaaaatatgcaaaaatctaATAATGGATTTATAATGgctataatgttttttttgttgttgtttttttttactacattgttaagtgcaaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC107672526

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240662.1 True 3079 mRNA 0.43 4 19860960 19864951
XM_043240663.1 False 3005 mRNA 0.43 5 19860951 19864951
XM_043240664.1 False 2542 mRNA 0.43 5 19860956 19864951

Neighbor

gene id symbol gene type direction distance location
camsap1b LOC107720249,LOC107552625,LOC107672541 coding upstream 791 19837755 ~ 19860160 (+)
notch1b LOC107720248,LOC107567148,LOC107699763,LOC107672539,LOC107745520 coding upstream 28097 19794796 ~ 19832854 (+)
adamtsl2 adamtsl2,LOC107699701 coding upstream 101670 19744545 ~ 19759281 (+)
LOC122344990 ttc16,LOC107699760,LOC107720230 coding upstream 127479 19726820 ~ 19733472 (+)
mboat4 LOC107720232,LOC107672543,LOC107567140,LOC107756285 coding upstream 196279 19659663 ~ 19664672 (+)
LOC122345916 NA coding downstream 89504 19954455 ~ 19960667 (+)
sh2d3cb sh2d3c,LOC107731039 coding downstream 174020 20038971 ~ 20047598 (+)
tor2a tor2a,LOC107699771,LOC107731016,LOC107552620,LOC107587655,LOC107672551 coding downstream 183174 20048125 ~ 20051547 (+)
inpp5e LOC107720240,LOC107552629,LOC107699774,LOC107672555,LOC107731045,LOC107587653 coding downstream 198749 20063700 ~ 20071214 (+)
LOC122345861 LOC107552612,LOC107576533,LOC107731014 coding downstream 214761 20079712 ~ 20095266 (+)
G37951 NA non-coding upstream 100747 19759711 ~ 19760204 (+)
G37843 NA non-coding upstream 213876 19594070 ~ 19647075 (+)
G37734 NA non-coding upstream 572623 19288016 ~ 19288328 (+)
G37620 NA non-coding upstream 933949 18925437 ~ 18927002 (+)
G37619 NA non-coding upstream 935518 18925210 ~ 18925433 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding downstream 8291 19873242 ~ 19874144 (+)
G38082 NA non-coding downstream 262450 20127401 ~ 20392624 (+)
G38091 LOC107699781,LOC107552636,LOC107587661,LOC107672574 non-coding downstream 306023 20170974 ~ 20552306 (+)
G38107 LOC107740807,LOC107552623,LOC107665026,LOC107731020,LOC107672533 non-coding downstream 438747 20303698 ~ 20684387 (+)
LOC122345857 NA non-coding downstream 454891 20319842 ~ 20320418 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other upstream 150881 19707288 ~ 19710070 (+)
msh3 msh3,LOC107720281 other upstream 846851 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 920056 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 1013277 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 2333507 17526024 ~ 17527444 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 102626 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 278332 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 320084 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 419666 20284617 ~ 20297222 (+)
LOC122345834 lix1,LOC107587723,LOC107672536,LOC107699708,LOC107552634 other downstream 542817 20407768 ~ 20416507 (+)

Expression


Co-expression Network