stag2a (stag2a,LOC107680370,LOC107732619,LOC107597229,LOC107687653,LOC107592356)


Basic Information

Item Value
gene id stag2a
gene name stag2a,LOC107680370,LOC107732619,LOC107597229,LOC107687653,LOC107592356
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11233407 ~ 11249164 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240691.1
gtgtgtgggtgtgtttgtgtgtggatgCTAGTAtgtgggtgtgggtgtgtgtgtgtggacgcgTATTAAGTGTGTTTTGGGTTTCTCGCGgccgtatttttttttactcctgtCCGCCCATAGAAGCAAACTGATTCTTCCAGCTACGAAACACAAACAGAACTGAGCCGGTTCTACTTGGAACGTATTTTAATGTCTTAACCACGGAACTCCGGTCCGGTTCGGTACCGttcggcggcggcggcggcggcggcagcaGTTCTGGGCGGTTTTTGATGCTGCTAGACTCACGCTGAGGGAGCATGTGTTTTTCAGCTGTGTGGGTCTGTCTGTCTACTGCAGTGTGGGGACACTTATAAACTCCAGAAGAAACGGAAGATGTTGACAAAATGATAGCAGCTCAGGACCTTCAAACAGACTTCCACCAggaAGGATACTCTCGGCTCTTGGACACTGATCTTGAAGATCTCGAGGGTCGGAATGGCAAATCTGGGAAAGGAAAGAAGGGGAAAAAGACTCCTGGAGAGAAGTCGAAGGGGTCAGAGGTGAGAGGTCGGGTAAATGGCCACCATCAGGAGAGTGATATGGAGAATCTCAGTTTGTTTGAGATTGTCAAATTGGGCAAGAGTGCCACACAGtcaGTGGTTGATGATTGGATTGAGTCCTATAAGATGGACAGAGACACCGCTTTGCTGGAACTCATCAACTTCTTTATCCACTGCTCTGGATGCAAAGGTGCTGTGAGCTCAGAGATGTTTCGGCACATGCAGAATTCTGAGATCATCAGGAAAATGACTGAAGAGTTTGATGAGgaCAGTGGTGATTATCCGCTGGCAATGGCAGGTCCAATGTGGAAGAAGTTTAAATTAAGCTTGTGTGAGTTCATCGCGGTTCTGGTTCGACAGTGCCAGTATAGCATCATCTATGATGAGTACATGATGGACACGGTCATCTCTCTCCTCACCGGCCTGTCAGACTCACAGGTCAGAGCGTTCAGACACACCAGTACCCTGGCAGCCATGAAACTGATGACCGCTTTAGTGAATGTTGCTCTGAATTTGAGTATTAATTTGGACAACACACAAAGACAATACGAGACAGAACGCAACAAGAGCATCGGGAAACGAGCCAATGAACGCCTGGAGCTCCTGCTGCAAAAACGCAAGGAGcTCCAGGAAAACCAGGATGAGATTGAGAACATGATGAATGCCATTTTTAAAGGAGTATTCATCCACAGATACAGGGATGTGATTGCTGAGATCAGGGTTGTCTGCATTGAAGAGATTGGTATGTGGATGAAGATGTACAGCGAGGCTTTTCTTAATGACAGTTACCTGAAGTATGTGGGCTGGACCATGTATGATAAGCAAGGTGAGGTTCGTCTGAAGTGTCTTACTGCTCTTCAGGGTTTGTATTACAGCAGAGAACTCAATGCCAGACTGGAACTCTTCACCAGCCGCTTCAAGGATCGAATCGTTTCTATGACTCTAGATAAGGAATATGATGTTGCTGTTCAGGCCATTAAGCTCCTGACACTGGTCCTGCAGAGTAGTGATGAGGTTTTGACAGCAGAAGACTGTGAGAGCGTCTATCACTTGGTTTACTCTGCCCACCGACCGGTGGCCGTCGCAGCAGGGGAGTTTCTCTACAAAAAGTTGTTCAGTCATCATGGTCCAGAGGATGAGGGGCGGCCCAGGAGAGGCAGACAGTGTTTGAATGCTAACCTCATCAGAACGACTGTCTTGTTCTTTCTTGAGAGTGAGctgCATGAGCATGGTGCCTACCTGGTGGACAGCTTGTGGGATTGTGCGTCTGAGCTGCTGAAGGACTGGGAGAGTATGATCAGTCTGCTGCTGGATGAACCTTACCCTGGAGAGGAGGctctcACTGATGCTCAAGAAGCTGCTCTGGTTGAAATCATGCTCTGTGCTGTCAGACAGACCTGTGAGTGTCACCCACCCATCGGACGAGGCCCTGGCAAAAGGGTTCTGACagctaaagaaaagaaaactcaGTTGGATGATCGAACAAAGATCACAGAAACATTTGCTGTGGCTCTGCCTCTGTTACTGACTAAATATTCGGTGGACCCAGAGAAGGTCACTAATCTGTTGCAGTTTCCTCAGTATTTCGATCTAGAGATCTACACAACCGGTCGGCTGGAGAAGCATCTGGATGCTTTGCTGCGCCAGGTCCGGGATGTGGTGGAgaagcacacagacacagatgtGTTAGAGGCATGCTCCATGACATTCCATGCACTGTGCAATGAGGATTTCACCATCTATAACCGTGTAGATATTGTCCGCAGCCAGATGCTTGATGAACAGATTGATAAGTTCCACCGACTGCTGGAGGATGTTCTtcaggagGGAGAGGAGCCTGATGAAGATGATGCCTATCAAGTTTTGTCAACACTCAAAAGAATCACAGCCTTCCATAATGCCCATGACCTCACTAAATGGGACCTTTTCACCAGCAACTACAGACTTTTGAACTCTGGTCTGCAAAACGGAGATATGCCTGAACAGATTGTGGCTCATGCACTCCAGTGCACTCACTATGTCATACTCTGGCACTTGGCTAAGGTCTCGGAGGGCAGTGGCAGTAagGATGATATGGTGCTGTTGCGGAGGCAGTTGAGAGCCTTCTGCATGATGTGTCAGAGGTATCTGAATAGTATCAGCACTGTTGTCAAGGAACAGGCCTTCACCATTCTTTGCGATGCACTCTTGATCTTCAGTTATCAGATTGTGGCTTCGGGGCGGGAAGCTTTAGAGCCCTTGGTGTTCAGTCCTGATGCATCCTTACAGAGCGAACTAATCAACTTTATCCTTGATCACGTGTTTGTTGATCAGGATGAAGACAGCAGCACAGATGATGAGGCTGGTAAGATTGAAGCGCTCCATAGACGCAGGAATTTACTGGCCGCCTTCTGCAAATTAATCATCTACAATGTGGTAGAGATGAATACAGGAGCAGATATCTTCAAACAATACATGAGAtACTATAATGATTACGGAGATATTATTAAGGAGACCATGAGTAAAGCACGTCAGATCGACAAGATTCAGTGTGCCAAGACTCTGATCCTCAGTTTGCAGCAGctGTTTAATGAGATGCTGAATGATCTGGGCTGTAACTCCGATCGGTCCACGTCTGCATTCTGTGGGATTAAAGAACTGGCCCGACGCTTCTCACTCACGTTTGGACTTGATCAAATCAAAACCAGAGAGGCCATTGCAATGCTCCACAAGGATGGAATAGAATTTGCCTTTAAAGAGCCCAGTCCACAGGGAGAGGGTGGCCCTCCTCTCAACCTCGCTTTTCTTGACATCCTCAGTGAGTTTTCCTCCAAACTACTGAGGCAGGACAAGAAGACTGTGCACCTGTATCTAGAGCGGTTCATGACCTTTCAGATGGCTCTGCAGAGGGACGACTGCTGGTTACCACTCATCTCCTACCGTAACTCTCTGCAGGCGGGTGCTGATGATGACACGCTTTCTGTCATCAGCGGTTTGAGCAGCAGGAGCTCCTCCCGCAGTCGCAGGAGCAAACCACTTGCTGCCAACAAGAGAAAACTACCCGAGGAGGAGAGCAGCTGTAGCAGCAGTGATGTGAGCATGTGGGTAAATCGTGAGCAGAGTGGCCCACACACTCCTGTAATGATGTCATCACCCCACATCGTCTCTACTGTCCAGCGGGATGCAAAGAAGCTCCGGCCTGAGCAGGGGTACATGGGAGTTTATAGCATGAGCAACGAAACGCCACACACAcctctgcagcagcagcagcagcaccaaAACATGGACTACAACTCTCAGGTCGCGTGGATGATGGCCCAGAAACAGCAGCATGAAAGAGCAAGCCTGCAGTATGGCAAGATGAGAGGCCACATTCAGCACAACATCCGGCGTGGCAGTGGGCTGATGGAGGATGATGAGGAACCGATTGTAGAGgatgtgatgatgtcatcagagGAACGATTGGACGACCTTAACGAGGGCATGGACTTCGATACCATGGACATTGATCTGccTCCATCCAAAAACCGCAGGGAGAGATCCGAGCTTAAACCAGACTACTTTGACCCTGCTTCTATCATGGATGACTCTgtCCTTAATGTCTCCATGTTCTGAGATGGGTCCGTGAGAGCCGTGACATGTTTTCCTCATCTGATTTCACTCCATGGACTAAATGCACATGATGGTGCTGCGTATCTTTCCCTCCTGAAAACACACCATAGCTTTCCATCTGTACATAATAACAGCCCACAGGGCGACAGACATTTTTAGCATGAGATCAGACTTATCTATTCATGCTCTTTTGTAATGGAGGTTTAAATAtagctgggttttttttgtaactcCTGAAGGAGTTTTGATTTTTAGATAATTTTGTAAAGACAATCAATTGTAAATGACTTTATAAAGGgtgatttaaatctaaaatttatAACTCAACTTTCCTTAAAGGGTTTAGACTTGCagtgtctctttttttccacagtacctttctccctctcttttttaaattcatcaatcatgttttcatttctcaCAAGCCTCATATTTTGATGATGTTTTTCAATACTTACTTGACTGAGTTTCTTGGACTGAAGGTCTTTTAAAGGTCCTTTGAGAACTCTAAGCACTTGTACTTATTGGCTAAAACTTAGAAAGCCCACCCCTCCCTTAGagttaaatttgttttttgttgttttttttggtcaacttaaaatttcaaaggTATTTCTGCATTAAGGGCATTGCCCCCTATTTTCACAGAAAAGCTCTTTCTGTAGAATATatctaatttctttttaaatattagaaatagatattataatatattgttatatatctaaaaaaatatatatatatataaataatatatatata

Function

symbol description
stag2a Predicted to enable chromatin binding activity. Predicted to be involved in sister chromatid cohesion. Predicted to be part of cohesin complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in Mullegama-Klein-Martinez syndrome and holoprosencephaly. Orthologous to human STAG2 (stromal antigen 2).

NR:

description
PREDICTED: cohesin subunit SA-2 isoform X1

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240691.1 True 4901 mRNA 0.46 34 11233407 11249164

Neighbor

gene id symbol gene type direction distance location
acsl4b acsl4b,LOC107747809,LOC107687654,LOC107597230,LOC107732603,LOC107680372,LOC107592357 coding upstream 413 11223954 ~ 11232994 (+)
cwc15 cwc15,LOC107597228,LOC107592276,LOC107732607,LOC107747811 coding upstream 10587 11218523 ~ 11222820 (+)
fam76b fam76b,LOC107680374,LOC107597227,LOC107687655,LOC107592275 coding upstream 15662 11210376 ~ 11217745 (+)
mtmr2 mtmr2,LOC107747813,LOC107597225,LOC107592277,LOC107732604,LOC107680397,LOC107687656 coding upstream 29181 11198211 ~ 11204226 (+)
tbc1d8b tbc1d8b,si:dkey-110k5.6 coding upstream 46733 11170213 ~ 11186674 (+)
cchcr1 LOC107680404,LOC107732622,LOC107747821,LOC107687693,LOC107592355 coding downstream 1461 11250625 ~ 11259480 (+)
nlgn3b nlgn3b,LOC107672382,LOC107680388,LOC107733224,LOC107597232,LOC103045798 coding downstream 55201 11304365 ~ 11322863 (+)
plp1b LOC107597234,LOC107680389,LOC107672433,LOC107592271 coding downstream 75579 11324743 ~ 11330306 (+)
iqcd LOC107733227,LOC107672405,LOC107597236 coding downstream 112902 11362066 ~ 11364940 (+)
uprt uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 coding downstream 151285 11400449 ~ 11403283 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding upstream 24002 11204500 ~ 11209405 (+)
G35267 NA non-coding upstream 45713 11187254 ~ 11187694 (+)
G35229 NA non-coding upstream 214215 10945056 ~ 11019192 (+)
G35202 NA non-coding upstream 395040 10838012 ~ 10838367 (+)
G35197 NA non-coding upstream 417106 10813457 ~ 10816301 (+)
G35304 prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505 non-coding downstream 133506 11382670 ~ 11387170 (+)
G35309 NA non-coding downstream 156364 11405528 ~ 11405761 (+)
G35311 NA non-coding downstream 164877 11414041 ~ 11414688 (+)
G35322 NA non-coding downstream 192375 11441539 ~ 11442411 (+)
G35316 NA non-coding downstream 214705 11463869 ~ 11465339 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 83182 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 168961 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 299654 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 497348 10717531 ~ 10736059 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 1093674 10064217 ~ 10139733 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 17478 11266642 ~ 11303431 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 389352 11638516 ~ 11652683 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 675064 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 999974 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 1264849 12514013 ~ 12528790 (+)

Expression


Co-expression Network