mfsd3 (si:dkey-229d2.4,mfsd3,LOC107744428,LOC107672752,LOC107673419,LOC107599916,LOC107592373)


Basic Information

Item Value
gene id mfsd3
gene name si:dkey-229d2.4,mfsd3,LOC107744428,LOC107672752,LOC107673419,LOC107599916,LOC107592373
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10342197 ~ 10361067 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240706.1
TCAAAAGGGCGCGTGACGTCAAGCGCTCGCGCGGAAGTACCGAGGATTGGAAAATAGAGGTTATGCTGCATAGAGCACAGCGGGTGAAGGAGACGTTTACCTGTAAATACAAGTACAGCCATGAGCTGAGGCTCCCCAAACCCGCCTTTCTCAATGATGAACGACAAACTGGTGTTCCTGGGTCTCCTTTACTTCATCCAGGGTATTCCGTATGGCCTGCAGTCGTCTTTGCTCCCGGTGTACCTGCGCGGTGCCGGCCACTCCCTCACCCGCATCAGCCTCACCAAAGTCCTCTATTTCCCCTGGGTGCTCAAGGTAATCTGGGCCCCTCTGGTGGACCGGACTGGCACCAAACGCTGCTGGTTAGTGGGCACAGTGGCTGGTCTGGCTCTCACCTGTTTGGTGAGCGCCACCATCTCACCTGATGTTCAGTACATGGGCGTAGCGGGCTCCCTGCTCGCTATGAACGTGCTGGTATCAGTGCAGGACATTGCGGTGGACGGAGCGGCCGTGCGGCTGCTCAGGGGGCAGGGGGAGCTGGGCCTGGGAAACACAGTGCAGGTGGTGGGGTATAAAGCTGGCTCTGTGTTTGCTGGAGGGGGGCTCCTGGCTGTCATAGATGTTGCAGGCTGGGGCTGGATGTTTGCACTGCTGGCCTGTGTTTACGGCGGTGTTGCTCTGTTCGTGTGGGGAGCGCCGGTGTTGGATGGAGAGTCGGCGCGGGGACAGGGAGAAGGACGGAGAGGGTCAAAGGATGTGATGCAACCCTGGAAGGTGTGGAGGAAGCTCATGTCTGTGCCAGGAACGCCATGGACGATGTTCTACGTTCTCACTTACAAGCTAGGTGAACAGGGGGCCATCACCATGTTTCCTCTCTTCTTGCTGGACCACCACATGACGGCCAGAGAGCTCGGGGTGTGGAACGGGGTGGTTGCCATGGCTTTTTCCATTTGTGGCTCATCAGTCGGGGGTTTCTTGCTCTCTCAGTACAGTATTGGCATGCTAATGAGACGTGTGTTTATGATGCGGACTGTCAGCATGGTCTTTCAGAGCTCACTTCTCGTGGTGCTGGAGCCCTCGCCCTTGATGAAAGGTATGGCAGTGCTGAGTCTGAGTTTGCAGCATTTCATAGCGGGTCTCATCACCACTCTGACGTTCACCACGATGATGAACTGCACACAGAGAGCTGAGGAGAGCATACAGGCCACCCACTACAGTTTTCTGGCCACACTGGAGGTCCTGGGGAAACTGAGTTTTAGTGCCCTGGCTGGAGGTATGGTGGACACTGTGGGCTTTCCCATAGCCTTCatcctctttctcttcctcacCTCCAGCAGTGCCCTGCACGTGTGGAGAGCCACAGAGACTGGCGTCCTGAAGGAGCAGCTCAAAGAGCAGCCACAGTGACCAGAGTTAGCCTATGAGAGAATGCGTATGTCTGGGTGAGAGAGGGAAATCAAGTCTTATGTTTTGCATAAGATACTGGTGACCAAATAGCCAGTGAAatgattatgttgtttttatttgtatttatttctaactCAACCAGCATTGATGTGACAAGAGCCACACAAGCACTCTCACTGTAAGCCAGTACCTCTctgaaaaacactgcaaatgCTACATTGCAACTCTACAGTAAATTAGCTTTAAAGGTACTTGCTTTTCATTAACAAGTCATTCTGAATGGCAAACGGACTGAACTATGGCAACACTGTGCACATGTCGTCTAGTCTGCCTGAAGGACAACAGTCAATCATTTAAACGACAAAAGGTGGTTAAACTATTACATTTGatatacaataacaacaattttACTGGttacaaaataacatataatGGTCTAGTCTAGTTTGGTTTAGTTATACATCCTAGTCATTTGAACGTTTCATTATATACAGCATGCATTCGCCTTAGAAATGCCTTTAGTTTTTAATCTGATGCCCTCTGACACCTTAGATACAATTCCATCAGCTTATTGACCAATCAGCAACACTTTTTGGGgcagtattaatattaaattgctACTATGCTTAGTggagtgcatttttgtattctaAATGCAATACTtaaattaaaggggtcatatcatTGAatgttcatatttcatttattataggTGTATGACGAAATAGCGCTGTAcctttttacagtattattcatTGACTCCCATATGGTGTTTAGAGACTTTATTCAAAAGTACTGCtacaaaagaatgaataaataaagagttAAAGCCTTGGTTATTTCCTGGCTGTGAAGGAAAGTCCTCATCCTTCCCAGTATTATTAGGAAAAGCGGTCCAGCAGCGAATGTGatcaaactgttttatatttgacaCATCAAGATGGTCTTTAACATCTTAAAGCCGCATCAGCAAAAATCAAGGGCCGCAGACGGTCATGAAAAACTTAATCAGGACTGTTTTGATGCAGAAAACTTGTCTAGCATTGTAAATGGAcctcagggaaaaaaaattgaaattgtatgatatgacccctttaatggATATGAATACTGTACATTGTAACAGTTAAACTCATCAAGCTCATTTTTTGAGCCGATACATGTTTGTTTGAAAcgtttgttttttgtatgagTTGTCTGCATTTCCTATGCAATAACACAATTATTCACGGTTATTACATACAACTTTACTactcatatataataaaactgtcaattgccttattattattttaatgactgcAAAGCCAAAACATGTTGAGATATTGTTGAGACTATGTAGGCATACACGCTGGATGTCAGTTTAGGAGGGGAATTCAATttcagttgcaaaaaaaaactaaactaaacaaaaaaacaaatcatcaaATGAAACCGCAGCTATACATGTGTATAGTGCagttacaatatatattgtCCATTCCTGTTGAAAGcagaatagctttttttttttattatactcaATACATTATAGTATAATACAATAATGTAGCCAAGTcttctttttgcatttgttttgttggacAAATAGATACAGATGGTCCCAATgaaatactacattttaaaaatggttacaAACTGAACTCTTATAAGTGGAAAAGCTAtggttattttgtcattaaatcaTCTGATAAGCAAAGCCCTTAACAAACAAGccattttttgccattttagcttGAACTAAAGGataaaagatcaaaataaaagacaaaaataaaatatattacc
>XM_043240707.1
CAAGCGCTCGCGCGGAAGTACCGAGGATTGGAAAATAGAGGTTATGCTGCATAGAGCACAGCGGGTGAAGGAGACGTTTACCTAGTACAGCCATGAGCTGAGGCTCCCCAAACCCGCCTTTCTCAATGATGAACGACAAACTGGTGTTCCTGGGTCTCCTTTACTTCATCCAGGGTATTCCGTATGGCCTGCAGTCGTCTTTGCTCCCGGTGTACCTGCGCGGTGCCGGCCACTCCCTCACCCGCATCAGCCTCACCAAAGTCCTCTATTTCCCCTGGGTGCTCAAGGTAATCTGGGCCCCTCTGGTGGACCGGACTGGCACCAAACGCTGCTGGTTAGTGGGCACAGTGGCTGGTCTGGCTCTCACCTGTTTGGTGAGCGCCACCATCTCACCTGATGTTCAGTACATGGGCGTAGCGGGCTCCCTGCTCGCTATGAACGTGCTGGTATCAGTGCAGGACATTGCGGTGGACGGAGCGGCCGTGCGGCTGCTCAGGGGGCAGGGGGAGCTGGGCCTGGGAAACACAGTGCAGGTGGTGGGGTATAAAGCTGGCTCTGTGTTTGCTGGAGGGGGGCTCCTGGCTGTCATAGATGTTGCAGGCTGGGGCTGGATGTTTGCACTGCTGGCCTGTGTTTACGGCGGTGTTGCTCTGTTCGTGTGGGGAGCGCCGGTGTTGGATGGAGAGTCGGCGCGGGGACAGGGAGAAGGACGGAGAGGGTCAAAGGATGTGATGCAACCCTGGAAGGTGTGGAGGAAGCTCATGTCTGTGCCAGGAACGCCATGGACGATGTTCTACGTTCTCACTTACAAGCTAGGTGAACAGGGGGCCATCACCATGTTTCCTCTCTTCTTGCTGGACCACCACATGACGGCCAGAGAGCTCGGGGTGTGGAACGGGGTGGTTGCCATGGCTTTTTCCATTTGTGGCTCATCAGTCGGGGGTTTCTTGCTCTCTCAGTACAGTATTGGCATGCTAATGAGACGTGTGTTTATGATGCGGACTGTCAGCATGGTCTTTCAGAGCTCACTTCTCGTGGTGCTGGAGCCCTCGCCCTTGATGAAAGGTATGGCAGTGCTGAGTCTGAGTTTGCAGCATTTCATAGCGGGTCTCATCACCACTCTGACGTTCACCACGATGATGAACTGCACACAGAGAGCTGAGGAGAGCATACAGGCCACCCACTACAGTTTTCTGGCCACACTGGAGGTCCTGGGGAAACTGAGTTTTAGTGCCCTGGCTGGAGGTATGGTGGACACTGTGGGCTTTCCCATAGCCTTCatcctctttctcttcctcacCTCCAGCAGTGCCCTGCACGTGTGGAGAGCCACAGAGACTGGCGTCCTGAAGGAGCAGCTCAAAGAGCAGCCACAGTGACCAGAGTTAGCCTATGAGAGAATGCGTATGTCTGGGTGAGAGAGGGAAATCAAGTCTTATGTTTTGCATAAGATACTGGTGACCAAATAGCCAGTGAAatgattatgttgtttttatttgtatttatttctaactCAACCAGCATTGATGTGACAAGAGCCACACAAGCACTCTCACTGTAAGCCAGTACCTCTctgaaaaacactgcaaatgCTACATTGCAACTCTACAGTAAATTAGCTTTAAAGGTACTTGCTTTTCATTAACAAGTCATTCTGAATGGCAAACGGACTGAACTATGGCAACACTGTGCACATGTCGTCTAGTCTGCCTGAAGGACAACAGTCAATCATTTAAACGACAAAAGGTGGTTAAACTATTACATTTGatatacaataacaacaattttACTGGttacaaaataacatataatGGTCTAGTCTAGTTTGGTTTAGTTATACATCCTAGTCATTTGAACGTTTCATTATATACAGCATGCATTCGCCTTAGAAATGCCTTTAGTTTTTAATCTGATGCCCTCTGACACCTTAGATACAATTCCATCAGCTTATTGACCAATCAGCAACACTTTTTGGGgcagtattaatattaaattgctACTATGCTTAGTggagtgcatttttgtattctaAATGCAATACTtaaattaaaggggtcatatcatTGAatgttcatatttcatttattataggTGTATGACGAAATAGCGCTGTAcctttttacagtattattcatTGACTCCCATATGGTGTTTAGAGACTTTATTCAAAAGTACTGCtacaaaagaatgaataaataaagagttAAAGCCTTGGTTATTTCCTGGCTGTGAAGGAAAGTCCTCATCCTTCCCAGTATTATTAGGAAAAGCGGTCCAGCAGCGAATGTGatcaaactgttttatatttgacaCATCAAGATGGTCTTTAACATCTTAAAGCCGCATCAGCAAAAATCAAGGGCCGCAGACGGTCATGAAAAACTTAATCAGGACTGTTTTGATGCAGAAAACTTGTCTAGCATTGTAAATGGAcctcagggaaaaaaaattgaaattgtatgatatgacccctttaatggATATGAATACTGTACATTGTAACAGTTAAACTCATCAAGCTCATTTTTTGAGCCGATACATGTTTGTTTGAAAcgtttgttttttgtatgagTTGTCTGCATTTCCTATGCAATAACACAATTATTCACGGTTATTACATACAACTTTACTactcatatataataaaactgtcaattgccttattattattttaatgactgcAAAGCCAAAACATGTTGAGATATTGTTGAGACTATGTAGGCATACACGCTGGATGTCAGTTTAGGAGGGGAATTCAATttcagttgcaaaaaaaaactaaactaaacaaaaaaacaaatcatcaaATGAAACCGCAGCTATACATGTGTATAGTGCagttacaatatatattgtCCATTCCTGTTGAAAGcagaatagctttttttttttattatactcaATACATTATAGTATAATACAATAATGTAGCCAAGTcttctttttgcatttgttttgttggacAAATAGATACAGATGGTCCCAATgaaatactacattttaaaaatggttacaAACTGAACTCTTATAAGTGGAAAAGCTAtggttattttgtcattaaatcaTCTGATAAGCAAAGCCCTTAACAAACAAGccattttttgccattttagcttGAACTAAAGGataaaagatcaaaataaaagacaaaaataaaatatattacc

Function

symbol description
mfsd3 Predicted to enable solute:proton symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MFSD3 (major facilitator superfamily domain containing 3).

NR:

description
major facilitator superfamily domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240706.1 True 3195 mRNA 0.44 6 10342197 10361067
XM_043240707.1 False 3167 mRNA 0.44 6 10342216 10361067

Neighbor

gene id symbol gene type direction distance location
anxa1a LOC107744429,LOC107599917,LOC107673431,LOC107738289,LOC107592317,LOC107672753 coding upstream 1077 10337223 ~ 10341120 (+)
LOC122346143 cyp1d1,LOC107599971,LOC107673361 coding upstream 17562 10319660 ~ 10324635 (+)
tmc2b tmc2b,LOC107744486,LOC108255389,LOC108434469,LOC103356627 coding upstream 23593 10309609 ~ 10318604 (+)
tmc1 tmc1,LOC107672717,LOC107738298,LOC107592401,LOC107599958,LOC107744426 coding upstream 35504 10297132 ~ 10306693 (+)
gda gda,LOC107673426,LOC107672768 coding upstream 60168 10276867 ~ 10282029 (+)
rorb rorb,LOC107744430,LOC107730723,LOC107599920,LOC107592316 coding downstream 47568 10408635 ~ 10433693 (+)
abca2 abca2,LOC107730718 coding downstream 108609 10469676 ~ 10524790 (+)
dph7 dph7,LOC107730721,LOC107672791,LOC107744432 coding downstream 166023 10527090 ~ 10531080 (+)
pnpla7b pnpla7b,pnpla7,LOC107744433,LOC107673412,LOC107599921 coding downstream 172120 10533187 ~ 10546933 (+)
emid1 emid1,LOC107599927,LOC107744434,LOC107673410,LOC107730716,LOC107672770,LOC107592308 coding downstream 191908 10552975 ~ 10608867 (+)
G35043 NA non-coding upstream 8389 10333219 ~ 10333808 (+)
G35042 NA non-coding upstream 11875 10329889 ~ 10330322 (+)
G35041 NA non-coding upstream 14736 10327031 ~ 10327461 (+)
G35040 NA non-coding upstream 15483 10325866 ~ 10326714 (+)
G34959 NA non-coding upstream 50336 10288424 ~ 10291861 (+)
G35081 NA non-coding downstream 186154 10547221 ~ 10547625 (+)
G35197 NA non-coding downstream 452390 10813457 ~ 10816301 (+)
G35202 NA non-coding downstream 476945 10838012 ~ 10838367 (+)
G35229 NA non-coding downstream 583989 10945056 ~ 11019192 (+)
G35267 NA non-coding downstream 826187 11187254 ~ 11187694 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 202464 10064217 ~ 10139733 (+)
si:ch211-102c2.4 NA other upstream 542839 9796381 ~ 9799358 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 1470679 8864202 ~ 8871518 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 2036751 8289720 ~ 8305446 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 2331598 8001578 ~ 8010599 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 356464 10717531 ~ 10736059 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 565756 10926823 ~ 10933753 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 685412 11046479 ~ 11064446 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other downstream 775156 11136223 ~ 11150225 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 905575 11266642 ~ 11303431 (+)

Expression


Co-expression Network