mrps30 (mrps30,LOC107699686)


Basic Information

Item Value
gene id mrps30
gene name mrps30,LOC107699686
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19597550 ~ 19599695 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240849.1
AGGCCCTGTATGACAGAAGAAGACCTCTGAAGAAGACCGCGTGGGACAAACATGGCGTCCTGCAGCAGGTTGCCCTTGCATCCTTTCCTCTCCAGGGCGTCGGTACGCCTCGTCTGTATCAGAAATGTCCAAGTCGAAGCCCCCACAGCACGGAGTTTATACCCGCCCGTCCTGCCCTCCCGCACCGCCAAAAGCAAGTCGGCGAAGCGGCGCGTGGTCGCGGAGTTCTTCGAGCAGCTGCGCTCGCGCACGGCGCAGGAGAAGATCCGAGCGCTCACTCGCATTCAGCGCAAGAAGTACGTGATTTACCCACAAACGTCTGCTCTCAACGCGGACAAGTGGTACCAGCACTACACCAAAACGGCGTATCTTAGCGGTCTGCCCGAGAAGCACGAGTCTGCGCCGGCGGTGGACGAGTCCGTGCTGTCCGAGGTACGATCTGTAGTCTGCAGCTCCATCCTGCAAGAACACTGGCACAAGAAGAAAGCGAGGACCTTCGTCCACAAAGAGCAAGAGCGGCTCGTCACTCCGTTTTTAAGGAACGCGGTGTCTGGTCTGAAACACCTTCTGGCTAAAGAAAACCCCGCGCTGAGTCTGTCAACTTTAGATTTTGACCCTCAAGTCAGCTATTACTGGTTACGGGGAGAAAGGACGGTTCCCGCGGGCCACAGGAGAGGACGGGTCGAGCCCATGAGATTCCAGATCGACGACAAACCTCACAGTCAGATCAGGAGCCTGCAGCAGCTTCCTGAGTTTGTTCCTCTTGAGGCAGAAATCTCTGCTGAAGTTCCCGTTATCACTTTGGCTCCCAACCTGCTCCCTTTGTTCAGAAGACAGTATGACAACAACATCTTTAtagGTGCCAAACTGGACGATCCCTGCTGCTATGGTCACACACAGTTTCACATGATCCCTGACAAGTTCCGCAGGGACAAAATGAGCAAGAGAGGCAACTCCGATCAGGTGGAGGTGTCACTGAGGGCCAACGGTATCTCCAGTCTGTTTGCATGGACGGGGGCGCAGGCTATGTATCAAGGTTTTTGGAGTGAAGAGGATGTGAGCCGGCCGTTTGTGTCTCAGGCCGTCATCACAGACGGCCAGTTCTTCTCATTTTTCTGCTATCAGCTCAATACTCTGGCTCTGAGCCCACGGGCTGACGGCAGCAATAGCAGGAAGAACTTGTGCTGGGGAACAGAAAGCATGCGGCTTTATGAGAGAATCACAGACGGAGATGTAGTGGGCTTGAACGATGCTGTTCTCAAACTGCTGCTGCAGTTTTTACTAAACAAACCACAGTtttgaaattatgaaaatgatgaTTGTTCGACGTgtcaataaacataatatatgga

Function

symbol description
mrps30 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPS30 (mitochondrial ribosomal protein S30).

NR:

description
39S ribosomal protein S30, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K17409 MRPS30; small subunit ribosomal protein S30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240849.1 True 1352 mRNA 0.53 5 19597550 19599695

Neighbor

gene id symbol gene type direction distance location
LOC122346079 LOC107720263,LOC107756281,LOC107699747,LOC107567145,LOC107703219 coding upstream 15484 19578598 ~ 19582066 (+)
scarb2a scarb2,LOC107699748,LOC107567147,LOC107703216,LOC107756261 coding upstream 38201 19546728 ~ 19559349 (+)
LOC122344925 LOC107720221,LOC107699684,LOC107703270,LOC107756316,LOC107577860 coding upstream 64480 19521428 ~ 19533070 (+)
apba1a apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151 coding upstream 90823 19458358 ~ 19506727 (+)
ptar1 LOC107699739,LOC107587501,LOC107567149,LOC107703268,LOC107756313 coding upstream 139810 19448258 ~ 19457740 (+)
cplx4b cplx4b,LOC107587492,LOC107567130,LOC107672561,LOC108423624,LOC107720257,LOC107699754 coding downstream 6285 19605980 ~ 19608057 (+)
prlrb LOC107720254,LOC107756284,LOC107672558,LOC107567136,LOC107587530 coding downstream 19646 19619341 ~ 19629820 (+)
coq2 coq2,LOC107587489,LOC107699757,LOC107756326,LOC107567138,LOC107672553 coding downstream 45842 19645537 ~ 19649266 (+)
mboat4 LOC107720232,LOC107672543,LOC107567140,LOC107756285 coding downstream 59968 19659663 ~ 19664672 (+)
LOC122344990 ttc16,LOC107699760,LOC107720230 coding downstream 127125 19726820 ~ 19733472 (+)
G37734 NA non-coding upstream 309222 19288016 ~ 19288328 (+)
G37620 NA non-coding upstream 670548 18925437 ~ 18927002 (+)
G37619 NA non-coding upstream 672117 18925210 ~ 18925433 (+)
G37618 NA non-coding upstream 672874 18923302 ~ 18924676 (+)
G37540 NA non-coding upstream 847495 18678596 ~ 18750055 (+)
G37951 NA non-coding downstream 160016 19759711 ~ 19760204 (+)
G37956 NA non-coding downstream 194748 19794443 ~ 19867398 (+)
G37958 LOC107745529,LOC107672542,LOC107720246,LOC107552607 non-coding downstream 273547 19873242 ~ 19874144 (+)
G38082 NA non-coding downstream 527706 20127401 ~ 20392624 (+)
G38091 LOC107699781,LOC107552636,LOC107587661,LOC107672574 non-coding downstream 571279 20170974 ~ 20552306 (+)
msh3 msh3,LOC107720281 other upstream 583450 18962322 ~ 19014100 (+)
G37626 LOC107720210 other upstream 656655 18938813 ~ 18940895 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other upstream 749876 18842819 ~ 18847674 (+)
LOC122345691 NA other upstream 2070106 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 2224691 17364849 ~ 17372859 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 107593 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 367882 19967577 ~ 20035380 (+)
lix1 lix1,LOC107552634,LOC107699708,LOC107587723,LOC107672536 other downstream 543588 20143283 ~ 20151686 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other downstream 585340 20185035 ~ 20513916 (+)
LOC122345823 LOC107740804,LOC107665032,LOC108255802,LOC107672563,LOC107731037 other downstream 684922 20284617 ~ 20297222 (+)

Expression


Co-expression Network