ift22 (ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786,LOC107587352)


Basic Information

Item Value
gene id ift22
gene name ift22,LOC107597505,LOC107712360,LOC107664522,LOC107677430,LOC107722786,LOC107587352
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 8127663 ~ 8128952 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240862.1
ATCGCCTTGGAAACGAGTTGTTTATTATGTTAGCCGTGAGCTAATACCCGCGCGCTTCATCTAGCTGTCTTTCGATGTGTATCGGTAGATCGTGCTGATTTGACACTTTaagcaaatgttttaaacctcaatttattctttttattatacacaatataaatgcCAAACTGTTGTTTTAGTAGCTAGCTTGCTAGCTAGCTTAGGAAAAATAAGCCTCTAGTCAAAATTTTCTATACTTAAATGCGTTCaagatgaaaatattattaattggACCAAGCGAGTGTGGGAAAACAGCATTGGCCAATTTTCTGTCTGACACCACAGAAACTATCGGAGCGGACTACAGCCCTACACAAGGAGTAAGGATACTTGAGTTTGAATCACACAATTTATCTAATGGCAACAAAAATTCTTCATGTGAAGTGGAACTATGGGATTGTGCGGGCGATTTCAAGTTTGAATCGTGCTGGCCAGCTCTGATGAAAGACTCCAATGGAGTAGTTATTGTGTTTAACCCAGATGTGCCCAGTCATCTCAAGGAAGTAGAGACCTGGTACTCTACATTTATCTCCTCACAGGGTCTACAGGAGGCCCAGTGTCTGCTCATAGCACATCACAAACCAGGGAGCGGGGCTGACACTACCCGTCCATCGTTAGCCCCACAGTTAAACAAGTTGCCGCTCATTCACTCAAACCTCGAGGAAGAACCTGAAGATGTCCGACAGGAGTTTCACAAATACTTGGGAAATGTTATGAGGATGCTATCAGAAAATCAGGAGCGAGAAGAAATGTCAATTATTACctaattttgtatataaatttttCGTTCCACTTTTGTACCCCCCTCCCCTCCacaattgcattaaaaatcactttgacctggtaaaacta

Function

symbol description
ift22 Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be part of intraciliary transport particle B. Predicted to be active in endomembrane system. Orthologous to human IFT22 (intraflagellar transport 22).

NR:

description
intraflagellar transport protein 22 homolog

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07935 IFT22, RABL5; intraflagellar transport protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240862.1 True 891 mRNA 0.41 5 8127663 8128952

Neighbor

gene id symbol gene type direction distance location
ftr82 LOC107712362,LOC107664526,LOC107597500,LOC107677429,LOC107587354,LOC107722781 coding upstream 1616 8120189 ~ 8126047 (+)
spns2 spns2,LOC107677434,LOC107597455,LOC107722776,LOC107587355,LOC106602867 coding upstream 36991 8025740 ~ 8090672 (+)
LOC122344894 cyb5d2,LOC107664515,LOC107712371,LOC107597422,LOC107664398 coding upstream 151025 7975083 ~ 7976638 (+)
sh3glb2b sh3glb2b,LOC107748508,LOC107681863,LOC107664415,LOC107597332 coding upstream 424492 7683732 ~ 7703171 (+)
pip5kl1 pip5kl1,LOC107598405,LOC107681849,LOC107712381,LOC107587371,LOC107664401,LOC107748514 coding upstream 444379 7676059 ~ 7683284 (+)
tcnba tcnl coding downstream 27938 8156890 ~ 8158237 (+)
tcnbb NA coding downstream 30955 8159907 ~ 8161393 (+)
c2cd2l LOC107717878,LOC107597552,LOC107722772,LOC107677417,LOC107587343 coding downstream 47350 8176302 ~ 8202258 (+)
LOC122345867 LOC108260105,LOC107656935,LOC107597601,LOC107386469,LOC106516344,LOC107717877,LOC108429707 coding downstream 73753 8202705 ~ 8203384 (+)
arcn1a arcn1a,LOC107717874,LOC107722780,LOC107677440,LOC108429760,LOC108260335,LOC107587342 coding downstream 82041 8210993 ~ 8218525 (+)
G34116 NA non-coding upstream 131505 7993152 ~ 7996158 (+)
G34104 NA non-coding upstream 192964 7865167 ~ 7934699 (+)
LOC122345061 NA non-coding upstream 196315 7912092 ~ 7931348 (+)
G34075 LOC107664520,LOC107748505,LOC107597375,LOC107712354,LOC107664410 non-coding upstream 346739 7717973 ~ 7780924 (+)
LOC122345618 NA non-coding upstream 401840 7713614 ~ 7725823 (+)
G34163 NA non-coding downstream 153 8129105 ~ 8131150 (+)
G34358 NA non-coding downstream 299531 8428483 ~ 8431274 (+)
G34383 NA non-coding downstream 317846 8446798 ~ 8447021 (+)
G34384 NA non-coding downstream 318900 8447852 ~ 8448278 (+)
G34387 NA non-coding downstream 327836 8456788 ~ 8460239 (+)
spns3 spns3,LOC107597443,LOC107712368,LOC107664514,LOC107677447,LOC107722774,LOC107587440 other upstream 117064 8001578 ~ 8010599 (+)
p2rx1 p2rx1,LOC107598068,LOC107712377,LOC107664512,LOC107587372 other upstream 329695 7754074 ~ 7797968 (+)
dpm2 dpm2,LOC107664400,LOC107712384,LOC107681851,LOC107598396,LOC107587395 other upstream 453027 7672827 ~ 7674636 (+)
tmem119b LOC107681861,LOC107597286,LOC107587378,LOC107735096 other upstream 530143 7592963 ~ 7597520 (+)
svopb LOC107723362,LOC107681854,LOC107598053 other upstream 560400 7558940 ~ 7567263 (+)
snx19a snx19a,LOC107597619,LOC107681657 other downstream 160768 8289720 ~ 8305446 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other downstream 735250 8864202 ~ 8871518 (+)
si:ch211-102c2.4 NA other downstream 1667429 9796381 ~ 9799358 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other downstream 1935265 10064217 ~ 10139733 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other downstream 2588579 10717531 ~ 10736059 (+)

Expression


Co-expression Network