zgc:55461 (tubb4b,LOC107597040,LOC107587400,LOC108258863,LOC107693853,LOC108261046,LOC106575097,LOC103024068,LOC108241762)


Basic Information

Item Value
gene id zgc:55461
gene name tubb4b,LOC107597040,LOC107587400,LOC108258863,LOC107693853,LOC108261046,LOC106575097,LOC103024068,LOC108241762
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7062979 ~ 7065087 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240908.1
TCATCCACCTGTGTTCCAAGGCTGGCGTTATTTAAAACTGGAAGCCGTTTCTGcgctctgcagagtttagtcGATCCGAGGTGGCAGAAAGTtcaacacatttgtttttgaacaaaaaagtgcttgtttttcacaatatttcaatATGAGGGAAATTGTTCACCTGCAAGCCGGTCAATGCGGAAACCAAATCGGTGCCAAATTTTGGGAGGTGATTAGTGATGAGCACGGAATTGACCCCACGGGAACTTACCATGGAGACAGTGATCTGCAGTTGGAGCGGATTAATGTGTACTACAACGAAGCCACTGGTGGGAAGTATGTACCCCGTGCTGTCCTTGTGGACCTGGAGCCTGGAACCATGGATTCAGTGAGATCTGGACCGTTTGGGCAGGTCTTCCGACCAGATAACTTTGTCTTCGGTCAGAGTGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACAGAAGGTGCTGAGCTTGTAGACTCGGTTCTCGATGTGGTCCGTAAGGAAGCGGAGAGCTGCGACTGTCTGCAAGGCTTCCAGCTCACGCACTCCCTTGGAGGCGGCACGGGGTCAGGCATGGGCACGCTCCTCATCAGCAAAATCCGTGAGGAGTATCCAGACCGCATCATGAACACCTTCAGCGTGGTGCCTTCACCCAAAGTCTCAGACACCGTTGTGGAGCCCTACAACGCCACGCTGTCCGTCCATCAACTGGTGGAGAACACTGATGAAACGTACTGCATCGACAACGAGGCGCTGTATGACATTTGCTTCCGTACACTCAAACTCACTACGCCCACCTACGGTGATCTCAACCACCTCGTGTCTGCCACAATGAGCGGGGTCACCACCTGTCTCCGCTTCCCCGGTCAGCTTAACGCCGATCTGCGCAAACTGGCCGTCAACATGGTGCCTTTCCCGCGTCTGCACTTTTTTATGCCAGGCTTCGCCCCCCTCACCAGCAGGGGGAGCCAGCAGTACCGGGCTCTTACGGTGCCCGAGCTCACCCAGCAGATGTTTGACGCAAAGAACATGATGGCCGCTTGCGACCCCCGCCATGGCCGCTATCTCACCGTCGCCGCTGTGTTCCGAGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTGAATGTGCAGAACAAGAACAGCAGCTATTTCGTGGAGTGGATCCCCAACAACGTCAAGACCGCTGTGTGCGACATCCCGCCTCGAGGTCTCAAAATGGCAGCCACTTTTATCGGCAACAGCACCGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACTGCCATGTTCAGGCGCAAGGCCTTCTTGCATTGGTACACGGGTGAGGGGATGGATGAGATGGAGTTCACGGAGGCCGAGAGCAACATGAATGACTTGGTGTCGGAGTATCAGCAGTACCAAGATGCCACCGCGGAAGAGGAAGGAGAATTCGAGgaagagggagaggaggagctagCGTAAAGAGTTGAATgctgaagttttttttcccgtttctttgtttgttttgtctctttgttctgttctttctttCACAAGCAGCTAAAAGCTAGCAATGtgaacaaatgtttattaaagctCTAAATTTGA

Function

symbol description
tubb4b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within cilium assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in Leber congenital amaurosis with early-onset deafness; hypomyelinating leukodystrophy 6; and torsion dystonia 4. Orthologous to several human genes including TUBB4B (tubulin beta 4B class IVb).

NR:

description
PREDICTED: tubulin beta-4B chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240908.1 True 1609 mRNA 0.53 4 7062979 7065087

Neighbor

gene id symbol gene type direction distance location
glipr2 LOC107723337,LOC107598272,LOC107691043,LOC107587479 coding upstream 3553 7052970 ~ 7059426 (+)
LOC122344685 LOC107691026,LOC107598247,LOC107587401,LOC107693829,LOC100001344 coding upstream 63591 6992222 ~ 6999388 (+)
prkaa1 prkaa1,LOC107730998,LOC107693840,LOC107691024,LOC107597029,LOC107726302 coding upstream 85304 6965149 ~ 6977675 (+)
ifitm1 NA coding upstream 98482 6963937 ~ 6964497 (+)
kyat1 ccbl1,LOC107731000,LOC107691018,LOC107596979,LOC107726298,LOC107587404,LOC108431029 coding upstream 100590 6957273 ~ 6962389 (+)
pole3 pole3,LOC107693859,LOC107587393,LOC107691032,LOC107597112 coding downstream 54254 7119341 ~ 7120962 (+)
lrsam1 lrsam1,LOC107597066,LOC107587365,LOC107723333,LOC107740956 coding downstream 58973 7124060 ~ 7133933 (+)
ptpa ptpa,ppp2r4,LOC107723355,LOC107597098,LOC107693860,LOC107587375,LOC107691031 coding downstream 84071 7149158 ~ 7157235 (+)
ntmt1 ntmt1,LOC107723349,LOC107691051,LOC107597156,LOC107693833,LOC107740971,LOC107587381 coding downstream 211898 7276985 ~ 7280143 (+)
ncs1a ncs1,ncs1a,LOC107693863,LOC107691040,LOC107740936 coding downstream 239129 7304216 ~ 7318648 (+)
G33712 NA non-coding upstream 132194 6929647 ~ 6930785 (+)
G33708 NA non-coding upstream 141340 6920745 ~ 6921639 (+)
G33665 NA non-coding upstream 568449 6475701 ~ 6494530 (+)
G33619 NA non-coding upstream 827338 6232297 ~ 6235641 (+)
G33506 NA non-coding upstream 886324 6174621 ~ 6176655 (+)
G33844 NA non-coding downstream 69207 7134294 ~ 7134884 (+)
G33850 NA non-coding downstream 69820 7134907 ~ 7135122 (+)
G33852 NA non-coding downstream 79973 7145060 ~ 7146006 (+)
G33853 LOC107723360,LOC107740932,LOC107691030,LOC107597084,LOC107587366 non-coding downstream 81948 7147035 ~ 7147616 (+)
G33857 NA non-coding downstream 101521 7166608 ~ 7168142 (+)
kank1b kank1b,LOC107730999,LOC107691025,LOC107597012,LOC107587402 other upstream 74207 6978548 ~ 6988772 (+)
si:dkey-34e4.1 si:dkey-34e4.1,LOC107700938,LOC107596916,LOC107710760,LOC107587412 other upstream 237613 6793365 ~ 6825366 (+)
dab2ipb dab2ipb,LOC107693836,LOC107710761,LOC107700936,LOC107726296 other upstream 300171 6617276 ~ 6762808 (+)
G33664 NA other upstream 570993 6473347 ~ 6491986 (+)
hexb hexb,LOC107718643,LOC107700931,LOC107655935,LOC107570862 other upstream 807639 6247795 ~ 6255340 (+)
gpr107 LOC107723348,LOC107691037,LOC107597176,LOC107693862,LOC107740935 other downstream 221481 7286568 ~ 7300729 (+)
G33878 c9,LOC107691041 other downstream 273381 7338468 ~ 7344078 (+)
LOC122345182 ns:zf-e68,myhz1.2,myhz1.1,myhz2,myhc4,LOC107598006,LOC103370545,LOC107723326 other downstream 308521 7373608 ~ 7449497 (+)
G33891 myhz1.2,myhz2,myhz1.1,ns:zf-e68,myhc4,mmyhl1,myhb,mmyhl2,LOC107723326,LOC105016875,LOC105016873,LOC106565367,LOC107088603,LOC107384188,LOC107093413,LOC103461378,LOC108241321,LOC107083053,LOC107083052,LOC107378336,LOC106938339,LOC106596646,LOC106596400,LOC106585883,LOC106597527,LOC106594844,LOC108261437,LOC106595486,LOC106598139,LOC108261508,LOC103379498,LOC103379499,LOC108444093,LOC101482140,LOC107660779,LOC108443910,LOC108415768 other downstream 355053 7420140 ~ 7520241 (+)
G33890 myhc4,myhz2,ns:zf-e68,myhz1.1,myhz1.2,LOC107723326,LOC107660779,LOC108415768 other downstream 360618 7425705 ~ 7446216 (+)

Expression


Co-expression Network