cchcr1 (LOC107680404,LOC107732622,LOC107747821,LOC107687693,LOC107592355)


Basic Information

Item Value
gene id cchcr1
gene name LOC107680404,LOC107732622,LOC107747821,LOC107687693,LOC107592355
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11250625 ~ 11259480 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240932.1
CGCGCCTACCGGAAATCTCTGCCATGACAACTGAACGGCGGGCGGGACGCGCACTTTCTAAAACTGTGACGTGAAATGATCATCAAAACATTACGGTTTAAGTATTTTACACGTTTATGTAAGAGCGATTTGTAAGACTGtgtttttagtagttattaTGGATAACCtgatgtggagagcagaaaggCTGAACGCGCCAGCGGACTTCATGAAAGCTCCCGATGGAGCACCTGTCTGTAACCCCACTCCTCCACTGATGACACCTGCTCAGTTTACTGGGAGTCCGCTAGCCCTGCCCACAGTGCCACAGACCACACCCACCCAAGTTCTGCCACAATTTAGAGCTCCGCCCCCTTCTACATTGAGTGAGGAGGGGTTTGGCTGGACAGAGCCTGTGGCGGTGGAAGCGTGGCAGTCTGTCCATCAGAAACACCAGAGtgagaaaataatacaaaggCTCCCAGAGCACAgGTTGCCAGAATTTGAGAGGAGCAGCTCAAAGCTCCTGCTGCAAGAGATGGAAATGTTAAGAGAAGACAAGGAAGTGATGAGAGGAGAGATGGATCGCCTTAAAGGAAGAGTGGAGTGTTTGAGAGAGCAGGTCAGAGATCagcaaaaccaaataaacagACAGTGTATAGAGCGTGATGAATTACACAGTCAACTGAAGAGCTGCAATGCTGAACTAAATACGAGCCAAGACCAGCTTTTGACCCAGAAAACAGActatgaattaaaatgtcaacatttgGAGAAAGAGTTACAGGATTCAAAGCAGGAGATGGGGAGACTGCAACAGAAACTAGAGACACAGAATGTCATGACCGATGCTGCACAGGAAGTGACCTTACTCAGGACTCAAATAAAGGAAGTGATATCAGAGAGAGATGAGCTGAGAAATCAACTGAGTGTCCTGAACAGCTCATTGGTGGAACAGACCCTGTGTGTTCAGAAACTGCGGACATACATTGGCAATCACATGacagagaaaaaagaagaggaagaactTAGACGACAGATACAGCATTTAGAGAAGGAAAAGGAAGCCCTGTCTTTATCAGTCCAGCTGCTGAATGTTCGCGTGAACGCAGCCAATGACATTTTGGCTATTCAGGAGAAAGAGCTAGGTGAACAGGTGCAGACTGACCCATTATACTCCGGCAGTAAAGCTGGGCAGATGTTGAGTGTCTGGAGACAAAAGGTCTTCATGCTGCTTGTTAAATTGCAGACCAGAGATTTAGAACTTCACACGGAGAAAACACAACTCCACAACATGGTTTCCTCTCTACAGCAGCAAGTAGAGTGTTTGCAGTCACAGAGCAGTGTGCTTCAGCACCAACTAGAAGACAGAACGGCCCAGTTGGAGTTACGACATGTACAAGCACAGggagTACAGCAGCAGTTGGACTGTGCTCTACAGGAGAATGCTCAGCTGAAAGAGTGCAATACATACACAGAGGGATCAGTGAATGATATCAGTGAAACGGCACACAGAGTGATGTCAGCCATAGAAATGAAGGCAGGTCAGATGGAAGCAGTTCAGTCCAGTGTAAGTCAGCTGAACCAGAGACTCGCCTTTGCTGCCAAACGTCTGGACACAGTACATGGGCTGCTGTTAAGGAAAGAAGCTCTATGGAGAACCAAGAAAGCTACTAGATCTCCAGAGCCAGCAGTGTCAGAAAGCTTTATTAAGAGTCTCGAGGCCGAGGTGGTTCTGTTGAGTGCAGAAAGAGACAAACTCGCACAAGAGCTCAAACGCACACCAGAGCTCATCCAGGCCTCCTTGTCAGAACTACAGCAGCAGCgagagagagagctgggaCACCTTAGGGAAGCTCTATCACAAAGCAGGGAGGAGTTGGAGGCATCAGAATCAAGCCGAATTGAGATGCAGAGACAATGTGAAGAACATGAGGGGACCATTGTGGAGCTCCGTGCAGAGGCCCAGAGACTACAGCAGCAGTGTGACTCAGTTTTACAAAAGGTGTCAGAcgttgagagtgtgtgtgcagagaAGCTCAGATACACAGAGTCTCAACTCAACACAGCGAGGAGAGAGCACACAAAAGCAGTCGTAGCTTTGCGACAGGTTCAGAGGcaggtggagagagagaaagaacagatGAAAGAcgtagagaaagagagagcagaacACATACACAAGCAGATCACACATCTGCAGAAGCAGCTGAAAGACAAGGACAAAGACCGCAACCTTCTACTGGCAGTGGTTCATGAACAGGGTTTGATGAATGACTATAAAAGCCTGAGAAGATCAGCATTTCAGACAACTGAGGCCCTGAAACAAAAGCATCATGCTCAGTCCGAGAGAAGCAATTCTCCAACTCCTGAAAGTCTGCTGGGGGCACTGCAAGCTCTTAGTGCCGCAGTGATGGGCAGCTCAGAGGAAGAAGATGATGAGGAGGGTCAGGCCTTCACTGTGACACAAACACCCTCTTGTGCTGACACACATAAAGAATAGTGCTGAACACACCAATcaattctctctcacacactcgctGTCCGCCCAAACGCTCTCATAGGGTATGATGtctgttttataatttaataaaagagatttttttgtaaaacta

Function

NR:

description
coiled-coil alpha-helical rod protein 1-like isoform X2

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16760 CCHCR1; coiled-coil alpha-helical rod protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240932.1 True 2594 mRNA 0.47 19 11250625 11259480

Neighbor

gene id symbol gene type direction distance location
stag2a stag2a,LOC107680370,LOC107732619,LOC107597229,LOC107687653,LOC107592356 coding upstream 1461 11233407 ~ 11249164 (+)
acsl4b acsl4b,LOC107747809,LOC107687654,LOC107597230,LOC107732603,LOC107680372,LOC107592357 coding upstream 17631 11223954 ~ 11232994 (+)
cwc15 cwc15,LOC107597228,LOC107592276,LOC107732607,LOC107747811 coding upstream 27805 11218523 ~ 11222820 (+)
fam76b fam76b,LOC107680374,LOC107597227,LOC107687655,LOC107592275 coding upstream 32880 11210376 ~ 11217745 (+)
mtmr2 mtmr2,LOC107747813,LOC107597225,LOC107592277,LOC107732604,LOC107680397,LOC107687656 coding upstream 46399 11198211 ~ 11204226 (+)
nlgn3b nlgn3b,LOC107672382,LOC107680388,LOC107733224,LOC107597232,LOC103045798 coding downstream 44885 11304365 ~ 11322863 (+)
plp1b LOC107597234,LOC107680389,LOC107672433,LOC107592271 coding downstream 65263 11324743 ~ 11330306 (+)
iqcd LOC107733227,LOC107672405,LOC107597236 coding downstream 102586 11362066 ~ 11364940 (+)
uprt uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 coding downstream 140969 11400449 ~ 11403283 (+)
si:dkey-237j10.2 LOC107672540,LOC107756556,LOC107597242,LOC107748630,LOC107680403 coding downstream 208240 11467720 ~ 11471124 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding upstream 41220 11204500 ~ 11209405 (+)
G35267 NA non-coding upstream 62931 11187254 ~ 11187694 (+)
G35229 NA non-coding upstream 231433 10945056 ~ 11019192 (+)
G35202 NA non-coding upstream 412258 10838012 ~ 10838367 (+)
G35197 NA non-coding upstream 434324 10813457 ~ 10816301 (+)
G35304 prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505 non-coding downstream 123190 11382670 ~ 11387170 (+)
G35309 NA non-coding downstream 146048 11405528 ~ 11405761 (+)
G35311 NA non-coding downstream 154561 11414041 ~ 11414688 (+)
G35322 NA non-coding downstream 182059 11441539 ~ 11442411 (+)
G35316 NA non-coding downstream 204389 11463869 ~ 11465339 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 100400 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 186179 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 316872 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 514566 10717531 ~ 10736059 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 1110892 10064217 ~ 10139733 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 7162 11266642 ~ 11303431 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 379036 11638516 ~ 11652683 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 664748 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 989658 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 1254533 12514013 ~ 12528790 (+)

Expression


Co-expression Network