LOC122345748


Basic Information

Item Value
gene id LOC122345748
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17593868 ~ 17614996 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251028.1
TTCAGCGCGATCCATTAATTTGCATATCACCATGGCACTACAGTTATTTTTCCTGTGTGCTGTGCTACCATGAAGCGATAAGAACCTGCATAAAACAGAATCAAAAGGCCAGAAAGCACAGGACACAATATGAGTTTTTCCCCTCCAGTGGTGACTTATGGGGAGTCAGCTCCTGTGGCCTTCTGGGATACTATAGACGGAACATGCCTTCAGCCACTGCGCCCGGCAACTGCCTCCAGTGGCAACAACTCCCCAAAGACAAACACTTCTTTATGGGATCTTCACTATGACCACACAAAGACCAGCCGCACGTGAGCAGGGCTGGAAACTTATCACATGtgcaattgtgaaaataaatcacatgtATGAAGGAActcgcatatatatatatttttttcttttttttttatgtctccTCAGAGACTTATATCATAACACATACAACTAAGCACATTCTGTTTATTCATACATCATTTCTCTCTTATTAACCTCTGTAATTTAGTCATTCATCGgtgatacaaaaataatgctCGCTATCCATAACTAATTACTTTTATGGCAGTAATAAAAGTTTGCTATTCCAtcagataaaatatataaaaaacagcacagagTATTATAATTAACAAATTTACCTAAATGCATCAGTTGCTCAGCcaaatgttgtgtgtttttactttCTTAAAGGCAAAAGCCTCTCTGATTTATATGAAAGGCCCTCGCTTATGagagaaataataaagaaagacaCTTGCAGGTATTGGTCCATACATACGTTGAGCATCTTCGGGGATAGTGCTGGTATGCTGGAATCTAAATGGCGGTGTCCCACGGGGGCTTCGGTTGACTGCTTGCTGACCTTTGCTGCCCTCGGACCACTAGCCACAGTTCAAACAAGAGGCACAAGGGACACATCAAGGGCAACGAAGGGCTAAAGAGGATTATAGatcggggttttttttctcgGCGAAGGCTGCTTGACCGAAACATTGCAATAAATACGGTTCGTTTTTGCAAGCTGTTATTAtatatgtggtgtgtgtgtgtatatataaatacatatatatggcATGCGTggtattttttcattcattttctttaaatagatCAACTGACGTAGAAAAGAATGTGTGTTTGACTCTTATGCTATTTttgtaaagagagagagcgagagagagagaaatgttaGGGTTTTATgatctatacttttttttccaatgcAATATGAAAGTCACTGATCTTTTCATGATTGTACATTGCAATAAAATACGATGAGACTATTGAATTATACTTCGA

Function

GO:

id name namespace
GO:0032400 melanosome localization biological_process
GO:0051875 pigment granule localization biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko04742 Taste transduction
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251028.1 True 1296 lncRNA 0.39 2 17593868 17614996

Neighbor

gene id symbol gene type direction distance location
LOC122345176 LOC107720189,LOC107660966 coding upstream 182 17591913 ~ 17593686 (+)
rasa1a rasa1,rasa1a,LOC107720192,LOC107553923,LOC107669512,LOC107753180,LOC108443998 coding upstream 7516 17554410 ~ 17586352 (+)
LOC122344741 otpb,LOC107720233,LOC107587559,LOC107699682,LOC107682870 coding upstream 216859 17374852 ~ 17377009 (+)
LOC122345919 camsap1,camsap1a,LOC107705949,LOC107675701,LOC107661566 coding upstream 219620 17373273 ~ 17374248 (+)
LOC122345236 sh2d3c,LOC107731039 coding upstream 265454 17319860 ~ 17328414 (+)
polr3g polr3g,LOC107669519,LOC107557435,LOC107756241 coding downstream 281078 17896074 ~ 17899622 (+)
adgrv1 adgrv1,LOC107660972,LOC107669515 coding downstream 292412 17907408 ~ 18012794 (+)
nr2f1a nr2f1a,nr2f1,LOC107671052,LOC107567418,LOC107699709 coding downstream 746877 18361873 ~ 18369522 (+)
slf1 slf1,LOC107703243,LOC107756294 coding downstream 1033769 18648765 ~ 18676675 (+)
fam81b fam81b,LOC107699714,LOC107703202,LOC107587521 coding downstream 1190988 18805984 ~ 18814930 (+)
G37331 LOC107720200,LOC107699749,LOC107756319,LOC107587493,LOC107703272,LOC107567144,LOC108423573 non-coding upstream 236109 17354606 ~ 17357759 (+)
G37333 NA non-coding upstream 240772 17351156 ~ 17353096 (+)
G37330 NA non-coding upstream 242946 17350591 ~ 17350922 (+)
G37308 NA non-coding upstream 703891 16889197 ~ 16889977 (+)
G37291 NA non-coding upstream 766392 16827125 ~ 16827476 (+)
G37433 NA non-coding downstream 276955 17891951 ~ 17893273 (+)
G37449 NA non-coding downstream 404334 18019330 ~ 18019601 (+)
G37475 LOC107720216,LOC107575123,LOC107567414,LOC107756269,LOC107720179,LOC107699689 non-coding downstream 423136 18038132 ~ 18044946 (+)
LOC122345897 NA non-coding downstream 490103 18105099 ~ 18120648 (+)
G37490 NA non-coding downstream 582207 18197203 ~ 18197542 (+)
LOC122345691 NA other upstream 66424 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 221009 17364849 ~ 17372859 (+)
G37228 ncor2,LOC107742750 other upstream 1032127 16486620 ~ 16561741 (+)
G37227 NA other upstream 1033136 16474708 ~ 16560732 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 1198306 16391797 ~ 16395562 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 1227823 18842819 ~ 18847674 (+)
G37626 LOC107720210 other downstream 1323817 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 1347326 18962322 ~ 19014100 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 2092292 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 2352581 19967577 ~ 20035380 (+)

Expression


Co-expression Network