LOC122345897


Basic Information

Item Value
gene id LOC122345897
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 18105099 ~ 18120648 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251053.1
TCCCGGAACAAACGGCGACTCGGCGTGCTTCTTGGAGACGCGCTGGCTTTGTTTGGAAACATTTTCGTCGGcggaaaacaaactgaaatgttgTGTAAAAGCTTCTTTTCTCTTGACCTTGGAGCCTGACTGTTACGAGAAGAAACCCCACCAGCCCCAAAGACTTATTCCCTCAATTTAACAGCAGACCGAGGTGTTTCTCCAGCATCATCGGATCAATGAAAACCCCAGGGACGATGCTGATTGCCAAAGATTGGACAAGCTAACAAGCGCATGATGAGGAACCAGTTGGTTCTTCTTGCTTTCTCTCAGTTTTCGGAGGTCTTTGGGACAGGCACACACAAAAGGAAAGCTGATCCGTGGATGTATTCTGTCATTCTCTTGGAGGCTGCTTTTTCTTCCTTGTTTTGACTTAGTTCAACTTGACAGGGTGCTTTTAAGGATATTTTGGGGACCAAAAATGAGTGGAATACCAGGAAATCAATGAAAGGATGTATTCATGGATCGGAGCTGGTGGACTAAATTTTAACTCCCTTTCAGTTCAAGTTACTGACTCATTTATCAGAGTCTTCCATCACAAGGTGGCCTATTGTGATCGACACTCTATGGTTTTTCCTTTACATGTGGGTGAGTCTTAACGTTTTCTTTGGATCCATCTTATCCCATATATGATTAGCGATTGGtgagagacacagagagggaGGGACAATTCAAACACTCAACTCACCCTCTAGAATAGTATACAATAGTGGAAAGGGTCTAGTGGAATTTTcccacataaaataaataaatacaaataaaatcattaatattaaatactaaattcaGCACTACCcttatacaaaaatgttatgttcaTCAAGGAGTGATAGAAATTAATCATAAGACTaatcaatcattttcttttgattaCACTCCTGAAAAGAATGCATCTCGAAAATATTAAGCGTATATTAACAGTTTTCAACATCGATATCGATAGTGATATTGATCttgacactgaaaactgcagtaatatctgaagaaaggaaaaacagctttaatacagtgtattacaatagaaaatggTTCCTTTGTAATTTTtcacattataatttttttttataaataagagcagacttggtgagcataagagacattaaaaacattttaaaaagtcttactgaCGCCCAAACTTTTCAGTGATGGTGTATTTACCatttactgcatgaaaaaattGTGTACAAAAGCTTGTTGCCAAATATCAATCTATGAGACCTTTTTACATTAGTATACATTCATCACATTGAATTTGTTTActaaatattatagttatttgtaaatgaatcacCCCAACTCCCCAGCCTCATGTCAGTTAGCGCGTTTGTTCCTCTTTGCATTCAATATTTTAGGTTTTCCCTGGCAGATGACAGTTGTAAGTAGCCATATTAGATAACCCTCAGGGTGCCCTTAGTCTTGATTTGAGCACAATTAATTTTCTATTATAGAGTGCTAAAGATGTTCAGTGCTGCTCTGGCTCACCTACAATATTGAGTGGCCAGCCAATTGTGGACTTGGTCAGGCCTTGTAGTGGGGTTTGGAGCTTCCCTCAGGGAtctcatttattatttgcagATATTGATTTGACAGAAAGGGCAAGGCAAACTACTCTGGTGTTGACTTAGACCTGGCCCCTGGCTGTTAACATGCTCTCAGCTGACCAGTGCTGAGACTGTGATGTTTGCGGTTTGATCCACGGCTCTTACGGAGCGAATATTTTCAACTGTTAAATTGTGGGAGTCTCTAATATAGTGTTTCTTGAGAAGAGGAAGGGAGGATGGTGATTGTGGAGCACGATGCCTCAGCCTTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251053.1 True 1851 lncRNA 0.39 3 18105099 18120648

Neighbor

gene id symbol gene type direction distance location
adgrv1 adgrv1,LOC107660972,LOC107669515 coding upstream 92305 17907408 ~ 18012794 (+)
polr3g polr3g,LOC107669519,LOC107557435,LOC107756241 coding upstream 205477 17896074 ~ 17899622 (+)
LOC122345176 LOC107720189,LOC107660966 coding upstream 511413 17591913 ~ 17593686 (+)
rasa1a rasa1,rasa1a,LOC107720192,LOC107553923,LOC107669512,LOC107753180,LOC108443998 coding upstream 518747 17554410 ~ 17586352 (+)
LOC122344741 otpb,LOC107720233,LOC107587559,LOC107699682,LOC107682870 coding upstream 728090 17374852 ~ 17377009 (+)
nr2f1a nr2f1a,nr2f1,LOC107671052,LOC107567418,LOC107699709 coding downstream 241225 18361873 ~ 18369522 (+)
slf1 slf1,LOC107703243,LOC107756294 coding downstream 528117 18648765 ~ 18676675 (+)
fam81b fam81b,LOC107699714,LOC107703202,LOC107587521 coding downstream 685336 18805984 ~ 18814930 (+)
nol6 nol6,LOC107699715,LOC107587545,LOC107579382 coding downstream 712167 18832815 ~ 18842452 (+)
cert1a col4a3bpa,LOC107720288,LOC107587519,LOC107703248,LOC107555488 coding downstream 727288 18847936 ~ 18867441 (+)
G37475 LOC107720216,LOC107575123,LOC107567414,LOC107756269,LOC107720179,LOC107699689 non-coding upstream 60153 18038132 ~ 18044946 (+)
G37449 NA non-coding upstream 85498 18019330 ~ 18019601 (+)
G37433 NA non-coding upstream 211826 17891951 ~ 17893273 (+)
LOC122345748 NA non-coding upstream 490103 17593868 ~ 17614996 (+)
G37331 LOC107720200,LOC107699749,LOC107756319,LOC107587493,LOC107703272,LOC107567144,LOC108423573 non-coding upstream 747340 17354606 ~ 17357759 (+)
G37490 NA non-coding downstream 76555 18197203 ~ 18197542 (+)
G37491 NA non-coding downstream 157931 18278579 ~ 18278805 (+)
G37492 NA non-coding downstream 158888 18279536 ~ 18279793 (+)
G37495 NA non-coding downstream 230038 18350686 ~ 18353465 (+)
G37497 NA non-coding downstream 252851 18373499 ~ 18390066 (+)
LOC122345691 NA other upstream 577655 17526024 ~ 17527444 (+)
LOC122344991 camsap1b,LOC107587696,LOC107672541,LOC107552625,LOC107720249,LOC107745551 other upstream 732240 17364849 ~ 17372859 (+)
G37228 ncor2,LOC107742750 other upstream 1543358 16486620 ~ 16561741 (+)
G37227 NA other upstream 1544367 16474708 ~ 16560732 (+)
LOC122345998 LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 1709537 16391797 ~ 16395562 (+)
arsk arsk,LOC107703223,LOC107720292,LOC107756297 other downstream 722171 18842819 ~ 18847674 (+)
G37626 LOC107720210 other downstream 818165 18938813 ~ 18940895 (+)
msh3 msh3,LOC107720281 other downstream 841674 18962322 ~ 19014100 (+)
nrarpb nrarpb,nrarpa,nrarp,LOC108255347,LOC107595556 other downstream 1586640 19707288 ~ 19710070 (+)
col27a1b col27a1b,col27a1,LOC107699687,LOC107720196,LOC107552608,LOC107731038,LOC107720245,LOC107672548,LOC107587699 other downstream 1846929 19967577 ~ 20035380 (+)

Expression


Co-expression Network