LOC122345965


Basic Information

Item Value
gene id LOC122345965
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20981027 ~ 20999088 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251063.1
TTTCTAATAGTGATTATGAGACTTCATGGCGGCCTGCTTCGAGCCATTTTCTTAAATGCGATATTTTCGTCTCACGTAGGCGTGATGATAGATTCACTTACCCACTCAAGTCTTCAAATAAGcttttatcaatttattaagATGTTTTTTATCTCCAAGACACAGAACGGCTCCCTTTCTGGACGCTGATTGTCCCTGGGGCCTTGAGAGTGGAACAGTTTGCAGACCCTCCATTTGGCGCGATCTACTGCAGAACTTGTTTGTGTCCTGCTTGGTTTCAGTTGTTCGCATGACACAATGGAGGATATCATTTTTGGGGAGGTGTGGAGCAGTGAATTGCTCCCCACTCCACTGAGCCATCGTACACAGACCTTTTACACTCGGCACAATACAccctgcagcacacacacagcacttaCACCGCGACCCCACCTCCTTTAAAACCAAACACAGCACTTAGCAGTATTTTAGCCTCAAACACACAgcccacaaaacacacacacacacacacacatcttgaCCCTGTCTGGAGTGCTAACTGTCAGCAACGTTCAGGGTGGACGTATAGTTTGTGTCCATCCTAAATGTGTCtggataattaaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251063.1 True 606 lncRNA 0.45 3 20981027 20999088

Neighbor

gene id symbol gene type direction distance location
surf4l surf4l,LOC107740812,LOC107688631,LOC107595501,LOC107665048,LOC100304967,LOC108423697,LOC103043297 coding upstream 641 20973946 ~ 20980386 (+)
ciz1b LOC107740837,LOC107595499,LOC107665018,LOC107688644 coding upstream 7561 20967803 ~ 20973466 (+)
LOC122344887 cmlc1,LOC107095684,LOC103473836,LOC105934481,LOC102226792,LOC103150158,LOC103390188 coding upstream 188049 20792204 ~ 20792978 (+)
ak5l ak5l,LOC107731024,LOC107665022,LOC107740835,LOC107595531,LOC108255392,LOC108423692,LOC107672580 coding upstream 190405 20784861 ~ 20790622 (+)
LOC122345842 gpsm1a,LOC107587727,LOC107595532,LOC107672581 coding upstream 197639 20774399 ~ 20783388 (+)
prdm12b prdm12,prdm12b,LOC107688643,LOC107665021,LOC107740838,LOC107731029,LOC108423597,LOC103042983 coding downstream 27762 21026850 ~ 21030937 (+)
c5 c5 coding downstream 32639 21031727 ~ 21046644 (+)
gsnb gsnb,LOC107595496,LOC107665029,LOC107688626,LOC107731030,LOC107587666 coding downstream 76082 21075170 ~ 21081018 (+)
usp2b usp2b,usp2,LOC107665042,LOC107740817,LOC107731051,LOC107688622 coding downstream 122075 21121163 ~ 21151843 (+)
tlcd3a fam57a,LOC107740818,LOC107665040,LOC107731057,LOC107688621,LOC100712488,LOC103354813 coding downstream 159347 21158435 ~ 21174715 (+)
G38209 NA non-coding upstream 30029 20946345 ~ 20950998 (+)
G38199 NA non-coding upstream 37914 20938833 ~ 20943113 (+)
G38118 ak5l,LOC107731024,LOC107740835,LOC107672580,LOC107665022,LOC107595531,LOC108423692 non-coding upstream 234147 20744558 ~ 20746880 (+)
G38132 NA non-coding upstream 282002 20698347 ~ 20699025 (+)
LOC122345853 NA non-coding upstream 343758 20611326 ~ 20637269 (+)
G38297 NA non-coding downstream 290843 21289931 ~ 21425456 (+)
G38302 NA non-coding downstream 490579 21489667 ~ 21549253 (+)
LOC122345943 NA non-coding downstream 497356 21496444 ~ 21497262 (+)
G38403 NA non-coding downstream 822390 21821478 ~ 21829684 (+)
G38430 NA non-coding downstream 868040 21867128 ~ 21867459 (+)
pappab pappab,LOC107665047,LOC107587665,LOC107667798,LOC107595518,LOC107731007,LOC107740823 other upstream 92756 20815421 ~ 20888271 (+)
G38094 olfm1a,LOC107672574,LOC107587661,LOC107552636 other upstream 418675 20558827 ~ 20562352 (+)
G38092 LOC107699781,LOC107552636,LOC107587661,LOC107672574 other upstream 467111 20185035 ~ 20513916 (+)
cntrl cntrl,LOC107740813,LOC107665016,LOC107688625,LOC107731033,LOC107587713 other downstream 47852 21046940 ~ 21069517 (+)
tecta tecta,LOC107665015,LOC107688634,LOC106603728 other downstream 85860 21084948 ~ 21120840 (+)
LOC122345215 specc1,LOC107712164,LOC107665038,LOC107731042,LOC107688619,LOC107587672 other downstream 181356 21180444 ~ 21260715 (+)
adora2b adora2b,LOC107712140,LOC107665025,LOC107595487,LOC107688642,LOC107731023,LOC107587731 other downstream 262466 21261554 ~ 21270874 (+)
G38318 aspa,LOC107665049,LOC107712162,LOC107595485,LOC107688617,LOC107587675,LOC107731059 other downstream 684191 21683279 ~ 21685619 (+)

Expression


Co-expression Network