G45554


Basic Information

Item Value
gene id G45554
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15486663 ~ 15489101 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67453
GTGTTTATTCTCCCCCTCCCCAAACTGTTATTAACCCAatctaattatattaaatgactctacattaaataatgaatattattgcATAATACAGATAAGCATTTCAggcataatattttataatgatattaacGGATCAATTTTAAACATGACAATACATCCGCTTATCAGGcttatatgttttattgttttggaaagAGCAAAGTAATCTCAGTATCAgatctttgttaacatttttgtacAAACACAGCTTGCACATGTTGCTGGGAAGAGATGATTTACAGTTACCagacgcgcgcacacacacacacacacacacacacactctccctcttacacacacacacacacacacaaatgcaactTTCACACACAGCTCCACTTTACATCTAAACTGACGTGagttttctcatttcttttcgCGCATCTGAGTGACGTTTTACTTTAGACCACACTGATTAAGCACTACACAATTTAATTCataggttttttttcctttcagctGACAAGACTCCAAATTGTTCTTCGATTAAACTCAGTGCAATAAAACCCCCTTTAGTTACAGTGCTCAGAAAATACGCAATGCGGTGTTAAAGGATGGCGACGCTCATCCTCAACGTCAAATGCGGATGAAAACCCATGAATCACAAAGCACCAGAATATTCTTCTCCAAACCATCACGACGTCTACATCAGACACTCAAAGATGGACCCAAAATGTTTGTTCTTGACACTGAACATCAGAGCATCTGGGAAGTTAAACagtaacacagttttttttttttttcttttttttttttttttttccacaagaaacaatatttttcactttattcgtaggtttaaacatttaaaaatatgcagcTCGTTTTCTCTTAAAGGACAATTCTGGAGATACACGtacaaacgaaaaaaaaaaagaaaagaagcgaTTTGGTCATTTAACCACTCAAGAACCTCGTCATCTCACAGAGACCATTACCGTTTGCAAAATAAAGATGTTCTGAAAGCGCAGGGGCTCATGCTCAGGACACTCAATAATATGTGCTAGGGGAGAGAGGCTGGATACAAACACGTCTGCGTGAGTGAGAAAAGAATTTACAATGTCCAAAAACGAATAGTGCTGCTATAAATAACACTGTAATAACATTAAGCGTGACGCATCTAGGTAGATACAGTATCCCGTTTCGTTTTCTCTTTTCAGTGTCACCCCGACCCATATATAGCATAAATTTTCTTTTCGCTcgagttaaaaaaattatatctgaaatcaatttaaaaattatacctCAGCATTATACTGTACACAGCTCACCCAACTACACAGATAACAAAAAGTCCAAAACTTCAAGGATCCTAAATTATGATACCATTCAAAGTCTATTCATATACAGTGTAATGTTtcgtatttttttatatatatatacaacaaatcgtgaataaataaaaatagaatgatGTACTCTGATGTCTAACACGTTCCTTCCTGGAACAACAGAAAGGCTatttaacaatacaaaaaaacaccaaacggccttatatatatatatatatatatatatatattacgacTTTTCCGTTCTTTTGTGAGTCTATTGCAAGCAGGAGTCTATTTTTCAAGCGGCGCTCGTCTAAAAACGGATTCGACAAAATTTGCATCCTTGTCCAATTAACGCACCTGACTGCGCTGTGTGAATTAAAAGGAGATATTCCTGaatacgcttttttttttttttttttttttttaaataagcttgAGCAACACCAAAATCTGATGCAGACCTCATACTACATGCACAGTATAGCGCCATCTTGTGGCGGAGGCTCATTTCCTCTTTTTGACCGTACTAATTTGCTACCTTGCTCGAAAATGTGATACTTTTGACAAACTGAATGCATAGagtaataaaaaacatcacatcagTATCGCTCCGAGAGAAGGATACAGAGATTTCAGGTTCAGGTAGGCACAGCCAATAACACGGCGGACAGAAATAGAGGCTAAACCTTACGAACAAACCCAGGCCGCAATACAGATGTTGCAAAGTGAGTACGGTTCACAAATATAAGAAGTACACCCTAAAACGGTCCACATTTTATAATGCAACTCATATAATactgctggagtgtgtgtgtgtgtgaggtccaCCTGTATTGTACATCTACAAAGGTTTATCCATAAGGTCAGGTAGGGGTCATGTCCTGTGTTTTAAATACTCAGAATTGGTCCAAAATATGCAGACTGGCGTCAGGTCGTTTAGTTGTCCGCCATGTATTTTCCTACGATGAAAGCGCAAATacagttttatgttttgaatgaatgcaGCGGAACTTATTTTCTCCAGATTCCCAGGCCACTGCTGATCAAGAAACAGACGACTCACCTGCTGCAAACCTCTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67453 True 2401 lncRNA 0.37 2 15486663 15489101

Neighbor

gene id symbol gene type direction distance location
sgip1a sgip1,LOC107659047 coding downstream 92540 15344929 ~ 15394123 (-)
LOC122346434 pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369 coding downstream 152730 15331236 ~ 15333933 (-)
LOC122346855 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634 coding downstream 230503 15246429 ~ 15256160 (-)
adcyap1r1b adcyap1r1b,LOC107731652,LOC107717143,LOC107692394,LOC107594619 coding downstream 274682 15187162 ~ 15211981 (-)
LOC122346528 LOC107731631,LOC107704508 coding downstream 338578 15144790 ~ 15148085 (-)
LOC122346414 uroc1 coding upstream 105262 15594363 ~ 15600846 (-)
LOC122346598 LOC107673517,LOC107711045,LOC107580698 coding upstream 112331 15601432 ~ 15603448 (-)
LOC122347277 endou coding upstream 202161 15691262 ~ 15695534 (-)
mast2 mast2,LOC107717134,LOC107692432 coding upstream 663045 16152146 ~ 16253840 (-)
tmem69 tmem69,LOC107731626,LOC107684288,LOC107725194,LOC107594642,LOC107692399,LOC107579605 coding upstream 765540 16254641 ~ 16256080 (-)
G45579 NA non-coding downstream 1696 15482906 ~ 15484967 (-)
G45560 NA non-coding downstream 166629 15319385 ~ 15320034 (-)
G45543 NA non-coding downstream 247023 15185152 ~ 15239640 (-)
G45532 NA non-coding downstream 332047 15102690 ~ 15154616 (-)
G45355 NA non-coding downstream 580955 14905502 ~ 14905708 (-)
LOC122347074 NA non-coding upstream 91483 15580584 ~ 15581055 (-)
LOC122347378 NA non-coding upstream 98405 15587506 ~ 15588222 (-)
LOC122347411 efcab12 non-coding upstream 101966 15591067 ~ 15592196 (-)
G45602 NA non-coding upstream 154968 15644069 ~ 15645396 (-)
LOC122347156 NA non-coding upstream 354030 15843131 ~ 15877467 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other downstream 155812 15327583 ~ 15330851 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 1293497 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 1700760 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1805369 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 2588945 12525756 ~ 12897718 (-)
insl5a LOC107692440 other upstream 17 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 46285 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 114809 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 267208 15756309 ~ 15765107 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other upstream 569867 16058968 ~ 16059767 (-)

Expression


Co-expression Network