XLOC_000070 (LO018629.1)


Basic Information

Item Value
gene id XLOC_000070
gene name LO018629.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6307305 ~ 6329292 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000142
ATGGCGACAGGCACCACCACCACTGCCCGTGAGCATCTCCTGGTGGTGCGGAGGCGCAGCCCACACATGCGCTACACCTTGAGCCCGGAAAACCTCCGCAGCCTTTCGGCGCAGGGTGGATCTGGAGGAGGAGGCTCTAGAGGTGGAGCACCCGAACCCATGGGCCTGCAGCGGGCTAACAGTGACACCGATCTAGTGACATCGGACAGCCGTTCCTCCTTAACAGCATCTACATACCAGTTCACACTAGGGCGAGGGCAAAACCTGGTCATCTCTTGGGACATCAAGGAGGAGGTGGATGCCACTGACTGGATTGGGCTCTATCACATTGATGAGACGTGTCCTGCTAATGTTTGGGACTCGAAGAACCGCGGGGTGAACGGCACTCAGAGAGGGCAGATCGTCTGGAGGCTGGAGCCCGGACCATACTTTATGGAGCCTGAGACCAAAATCTGCTTTAAATATTACCATGGAGTGAGCGGAGCACTGAGGGCCACGACACCCTGCATTACTGTCAAGAACCCTGGAGTTACTGTTGGGGCAGAGGGGCAGGTGGATGGACAGTCTGTCACTGAACACTGCAGGAAATTGGTCAGCTTTACATTATCAGATATCAGGGCTCAGGGTCTGAAGAAGGGCATGTTTTTTAATCCGGACCCGTATCTAAAAATGAGCATCCAACCAGGCAAGAGGAACGGCTTCCCCACGTTCAGCCACCACGGCCAGGAGAGACGAACTTCCATCATATCCAACACCACCAACCCTGTGTGGCACGGAGAGGTAATTGATATTCACTCATGATCCTGGGACGGTTAATGAGGTGTGTTGTTTGTGCTCGGTGTGTCAGAGCTTCACCTCTGCTCTCACTATCCACTGTGAATAACTCTGAAGTTAATGAGGTGTGACCAAATAGGGGTGACTCTGAAACTAGACGCTCTTTAAGTGAGTGAGCTGTACCCTTGAGCAAGGCTTAACCTCAGAAATTAgtgacccttttcacatttatgGAGTTCTCAGATGTGGTAGTCATCATATTTAAGTAAACTTCTGTCCGACTCTGAGCTTACTATCCTAAGTTAGcaacagaaattgagactcatcagaccaggcaactctTTTCCACTCTACTATTGTCCTATTTATTAAAGGAAGAATCCACTTTTTTAGgctaattttacaagtcaccttgagatttaccatttttgaatcgaTCCAGCCAATCAcgtctagcaggagcacttttagcttagcttagcatcattTGTtggatcagattagaccattagcatctcgcctacaaaaaaaaagagttttgataatttaaaACTTGACACTTCTGACATTAAAGGTCCTATgaatgttttttagatgttagtatgagtatttttagtttttaggatatctattaGCTAACACGCACAAAAACTGTGATTATAATTAGTGTTGAAGGGCTCCCCTCAGACTTTGAGATCAGCTGAGTGGATTCAAAtatagtaaaactcaactgtttaactctaggtgcAAAATCTGAGtcgacaaaaaaatgtaaatgattttaaataatttttctataAAACTTGACACTTCTGTAATTAAGACAAACGGAAAGTGAAAAGTTGCTAATTTCTATGTCAATATAgccaggaactatactctcattccaaTAATCaaggagtcaagctttaaataagaaaatgattTAACAgcttttttagaatatttttgagatgctaatggtctaatccgattaaatgatttatgctaagctaagctaaaagtgcttctgccagagccagagattggctgaatggattcaaaacagtaaaactcaacagtttactTCTAGGTGCAAAATCTGAATGCAAATCAAAATATGATTTCTATAAAACTTGACACTTTTATAATTAAAACAGACGGATAGTCAAAAATGGCTATTTTCTAGATCAATGAAGCCAGGAACTATATTCTCATCCCAGTGCAATAatcaaaaaaagttttgttgagatttttgagcgagatgctaatggtctaatctaattcaatgatttatgctaagctaagctaaaacaaatgttttttaaagaggTTTGAGAATTGTCCTAATAACAACTCAacacttctgtaattacatcatGTACAAAGACAGATGGAATAGAAACAGTTGTTAAATTCTTGGAAGATAATG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000113848

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000142 True 2185 mRNA 0.42 5 6307305 6329292

Neighbor

gene id symbol gene type direction distance location
XLOC_000069 fastkd2 coding upstream 35159 6225493 ~ 6272146 (+)
XLOC_000068 retreg2 coding upstream 96587 6189949 ~ 6210718 (+)
XLOC_000067 cnppd1 coding upstream 121773 6161930 ~ 6185532 (+)
XLOC_000066 abcb6a coding upstream 148696 6135176 ~ 6158609 (+)
XLOC_000065 NA coding upstream 508213 5795013 ~ 5799092 (+)
XLOC_000071 hecw2b coding downstream 27767 6357059 ~ 6366066 (+)
XLOC_000072 NA coding downstream 50586 6379878 ~ 6554470 (+)
XLOC_000073 NA coding downstream 68918 6398210 ~ 6403223 (+)
XLOC_000074 si:ch211-93g23.2 coding downstream 311145 6640437 ~ 6646356 (+)
XLOC_000075 ube2f coding downstream 317237 6646529 ~ 6664123 (+)
XLOC_000064 NA non-coding upstream 578621 5706970 ~ 5728684 (+)
XLOC_000059 NA non-coding upstream 993710 5311479 ~ 5313595 (+)
XLOC_000057 NA non-coding upstream 1277150 4901460 ~ 5030155 (+)
XLOC_000056 FO744838.1 non-coding upstream 1626828 4598060 ~ 4680477 (+)
XLOC_000076 NA non-coding downstream 335741 6665033 ~ 6668339 (+)
XLOC_000077 NA non-coding downstream 429891 6759183 ~ 6760930 (+)
XLOC_000078 CU302223.1 non-coding downstream 458398 6787690 ~ 6787804 (+)

Expression


Co-expression Network