LOC122346434 (pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369)


Basic Information

Item Value
gene id LOC122346434
gene name pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15331236 ~ 15333933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241046.1
CTTGAGCGCTGCGCGATTTACCAGAAGAAGAAGGTCGTCCTGTCATATGGagaatttcagttttattcatgTACCATCATTAGTTTCCAATCGATTATGCCAAACTGATCCGACACGATTTTGTAGATATAAGCAGGCCTCAAAACAGGTTGTACGGAATTAAAGCTGTCAAAAAATGGAGGTGTTTATGCTTCACTGGTATCGCAAAGTCCCAACCCTTCTGTCCGGGAAGCTCTTCAAAGCGGTAAAAAGAAGCGACATCAGATGTGCCATCCACACCTCTCCCCTCGTCTCTGTCCCTTCAAAACCAGCCGTCCCACCACCGCTCGTGTCTCGCCTCTTCCAGCCGTCCAACCTCCGGGAGGGTCAGGAGGGAGGAGACCTGACCTGCCGCAGCCATAGACTGATGCTGCAGACAGGGCTTATCTATCCCTCCAACCCTGGCTGCTTCTATTACTTACCAGTCGCTCTGAGGTCCATGGAGAAGCTGGTACGGCTCATTGATGAAGAGATGCATGCAATCGGTGGGCAGAAAGTTGACATGCCGGCACTGTGCAGTGCAGAACTTTGGAAGAAGAGTGGCCGCTGGGAGCTTATGGGGAAAGAGATGTTCAGGTTACTGGATCGGCACAATGCTGAATATTGCCTCGGGCCGACTCATGAAGAAGCAGTCACAGAGCTTTTTGCTTCCCAGACGACTATATCTTACAAGAAGCTGCCACTTCTTCTGTACCAGGTAACACGCAAGTTCCGTGATGAACAGAAGCCAAAGTTTGGGCTCCTACGTGGCCGGGAATTCTACATGAAAGACATGTATTCATTTGACGTTAATGAAGAGGCGGCTCTTCATACGTACCACTCTGTGTGCCGGTCTTATGGACGGATATTTGACCGACTAGGCTTGAATTGGGTGCAGGTACAGGCTGCCACCGGCAACATAGGAGGCACGCTTTCCCACGAGTTTCAACTGCCGGCCGACATTGGCGAAGACCAGTTACttgtttgtggaaactgtggCTTCTCTGCCAACATTGAAACTATGGAAGCAGGGCAGACTGAGTGCTCACAGTGCCGAGCGGGCACACTGACTGAATCCAAAGGCATCGAAGTTGGCCACACTTTTTACCTCGGCACTAAATACTCACAGGCATTTAGGGCCATGTTCATTAATGCGTCCAATGTGCCTGCAGTGGCTGAGATGGGGTGCTTCGGGCTTGGCGTCACTCGAATACTCGCTGCTTCTATAGAGGTGATGTCATCCAAGGATGCTGTTCGCTGGCCCGGGTTGATCGCTCCCTATCAAGTGTGCGTCCTGCCACCTAAAAAGGGCAGCAAAGCAAATGACGCCACACAAGTGTCTGAGGAACTGGCTCAAAGCTTGGGAAACAGCCTAACTAACTTGAGAGGAGAGGTGGTACTGGATGACAGGGTTCACATGACCATTGGTAAACGGCTGAAGGATGCTAAGATTTTAGGGTATCCATATGTGGTGGTGGTAGGACAGAAAGCCCTGGAGGATCTGCCCAGCTTTGAGGTGATTTGTCAGCGGACTGAAGAGACCATGTTTCTCAGTAAAGAGGGGCTAGTGGATCTTTTAAGTAAAGTTGAAACTATCTaatatttttagaacatttttgcatacattttacaaGTGTTCAAGCATTGTTTGtgtctgtaataaatgtatgtgatgTAGAAATCTCTGTAATGTTATAACAAggaaatattgttaataaaatgtgcctctttgttatattttgtcatttgttattgtcattttagaCCCACTAAGCTTCACTAAGTATAATTTAAAGCTGAAAAACTGATTTCAGTAATGACATATTATCTACAAGTTAAGATAATTGTTGCCAAATGCTTTAATGCAAAGTCTGCTCAA

Function

symbol description
pars2 Predicted to enable proline-tRNA ligase activity. Predicted to be involved in prolyl-tRNA aminoacylation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 75. Orthologous to human PARS2 (prolyl-tRNA synthetase 2, mitochondrial).

NR:

description
PREDICTED: probable proline--tRNA ligase, mitochondrial

GO:

id name namespace
GO:0006433 prolyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004827 proline-tRNA ligase activity molecular_function

KEGG:

id description
K01881 PARS, proS; prolyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241046.1 True 1897 mRNA 0.47 3 15331236 15333933

Neighbor

gene id symbol gene type direction distance location
LOC122346855 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634 coding downstream 75076 15246429 ~ 15256160 (-)
adcyap1r1b adcyap1r1b,LOC107731652,LOC107717143,LOC107692394,LOC107594619 coding downstream 119255 15187162 ~ 15211981 (-)
LOC122346528 LOC107731631,LOC107704508 coding downstream 183151 15144790 ~ 15148085 (-)
LOC122346854 zc3h3,LOC107731631,LOC107556980,LOC107717141,LOC107692390,LOC107704522 coding downstream 210623 15092139 ~ 15120613 (-)
mafaa mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 coding downstream 244670 15082218 ~ 15086566 (-)
sgip1a sgip1,LOC107659047 coding upstream 10996 15344929 ~ 15394123 (-)
LOC122346414 uroc1 coding upstream 260430 15594363 ~ 15600846 (-)
LOC122346598 LOC107673517,LOC107711045,LOC107580698 coding upstream 267499 15601432 ~ 15603448 (-)
LOC122347277 endou coding upstream 357329 15691262 ~ 15695534 (-)
mast2 mast2,LOC107717134,LOC107692432 coding upstream 818213 16152146 ~ 16253840 (-)
G45560 NA non-coding downstream 11202 15319385 ~ 15320034 (-)
G45543 NA non-coding downstream 91596 15185152 ~ 15239640 (-)
G45532 NA non-coding downstream 176620 15102690 ~ 15154616 (-)
G45355 NA non-coding downstream 425528 14905502 ~ 14905708 (-)
LOC122346442 NA non-coding downstream 675205 14651716 ~ 14656031 (-)
G45579 NA non-coding upstream 148973 15482906 ~ 15484967 (-)
G45554 NA non-coding upstream 152730 15486663 ~ 15489101 (-)
LOC122347074 NA non-coding upstream 246651 15580584 ~ 15581055 (-)
LOC122347378 NA non-coding upstream 253573 15587506 ~ 15588222 (-)
LOC122347411 efcab12 non-coding upstream 257134 15591067 ~ 15592196 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other downstream 385 15327583 ~ 15330851 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 1138070 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 1545333 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1649942 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 2433518 12525756 ~ 12897718 (-)
insl5a LOC107692440 other upstream 155185 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 201453 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 269977 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 422376 15756309 ~ 15765107 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other upstream 725035 16058968 ~ 16059767 (-)

Expression


Co-expression Network