LOC122346769 (LOC107733892,LOC107555367,LOC107703995)


Basic Information

Item Value
gene id LOC122346769
gene name LOC107733892,LOC107555367,LOC107703995
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10517118 ~ 10522696 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241623.1
ATAACAGCTTTAAGAACTGTCCGATtctttcaatgcatttatttatgtttttgtattaaaaatacatgcagaTGTATTTCTGATATGTTACAAATGTATTCTCTAATATTTCCAACCATACCTTTTGTCATGCATGGGTGCATTTGATCTTGAGACAGTGGTGTTATGCTTATGTTGTGCTTTTGGCTTTTATAAGAAGTATGATAATTGTTCCCACTGTGTACAGTAGTACGCACAACAGCCACATGGACGGGTCACGTGACTGTCTTCATCTGAACAAAACCCAGGTGTCTCAGGGAACCACAAAGAGAGCAACCGACCTACCGTATGCCTAACTTTACAATGCTTCAGGTTACTTCACATGTTGCACACTTTGGCTCTACAAATGTGAATGTCCGGAACGTGGAAGATGGCAATAATTATGCGGAGCGGATAAACCGTGACAGACCCTGTTACCGATCTCTTTACGGCTCTGaggacacaaaacacaaaacggGAGAGACTGACAAGGACGGAAGCAACATAAGACCTCGTTCGAGATCATTTTATGTTTGTGACACGGACGATGCAGGAACGGGTGACTTTAGCAGATGCAGTCCTATCAGAGCGAGAGCGAGATCGCTGCACAGCGAGGATGGGGAAAGAAACACTGGAGGGACCGGTATCGCTGCAAAGCCTCCGCTCAAAAGAACTAAAGCAAACTCCAGCAAACGGGCCAGCAAGGACCTTACAGGAAATAAAGGAAGTTTAAAGGGCGTACCCATGATGACCATTTCGGAGGTGGATAACTGGGAGATAAGCTCTTCTTCTGGGATGAAATACGGTCAGTATGTCGACTGGGAAAAGATTGCCCCAGACGCAGCCGTCCGCTATCGGAAGATCCTCTCAAGTGATCATTACGTGCTCAAAGCAATGGGCCGTACAGGATTCTGGTCCATGCCTCATACTCTCAGAGCCAAGGCTTACCAGCACATCATCCACAGCATCGAGAGCACATCCAGCACCGCTGATCTGGACGCTTACCAAGGCTTGGTTAGAAAGCTTTTTGGGGAACTGCAAACAAGCACGCATCCTTTCCCAAAGTTTATGGAGGATGGAGAAATTCCCAGATACTGCCTAAATAAAGCGGGTCTGAATTCGGTgaaaaaaattctcatttgtATAAACCACCATTTTCCCGATGTCAGCTTCTGTCCCATTCTGTCCGCTCTGGTGTCTCTTCTCTTGCACTTCAGTGGGGATGAAGCCCAGTGTTTCCACAGTATCTGTTCCCTGGTGTCCTACACAGACGTTAAAAAGCGCTACATTGACCGGACTTTCCTCACTTCGCATGCCTCGTGCATGACCTTTGGTGACCTTGCCAATAAATACTGCAAGGGAATCCGGAAGCTTATAGCCAGCTCTCACCAGAACCTGTTTGAGTTCTACTCTGACTGGATCATGTGGATCTTCGCCGATCTGCCCTTCACGTACGCTATCAGAGTGCTGGACGTCTATCTAATGGAGGGCTACAAAGTTTTATACCGTGTAGCTCTTGCTCTGCTCAGCTTTTACAAGGTCTCTGTGGCTTCTCGAGTGGCCCACGTCGATGACTTCAGACAGGACATGAAGAGTTTTGTGCAGAATGTGGGACGGCACAGTACTGTCGACGCTCTGCTTCAGAGGGCTTTTGATATACAGCTGCCCACGCGTAAGGAACTGACTTACCTCTTCAATGCCAATAAGGAGGCACTGCTTCATAAGGACATCCACAGTAAGAGCTCATACCAATCTATGGATTTCCGGGCCTTCAGCTCCTCTGTAGTGACTGAAACGGAGATGAGGGTGGTCTGGGCCTGGATTCCAGAGAGATTTGCTCTGTTCAGTCCCGTGCAGCTATTCAGTACAAATATTCACGGCAGAAGTCTCTCCTTGTTTTACTCTAAAGTTGAGGGGCACGATCCAACTGTTTTACTCTTGAAAACCGAAGATGAGGAGATCTGCGGGGCTTTCCTGTCCTCTGATTGGGCTCAGAAGAACTGTGATGAAAAGGGGCTTAAGTTCTTTGGCACAGGagagtgttttgttttcacTCTAAGACCGGGAATGGAGCTGTACCAGCGTACAGTGCTGCAGATCTCTGGGACGTCTGACAAATGTAATTCCTCCCATCAGAAGCAAACTCTCTCCACCAGCTCTCTGATGAGCACTCATGTGGACGGACCCGATGGAGCCTCTCTGAATCAAACATACGAGTCCGCATTATTCTGCACAATGTCAACGTTTAAATTCATGGCAGGAAATAATGAGACGCTTTTAATTGGTGGTGATGGTGGCCATGCGCTGAACCTGCAGGCTGATCTGACAGCCGGATCTTCTGAACACTGCCATACGTTTGAGAGCCCACCTCTCTGCAGGGGATGCTTCAAGATCCAGTCTCTAGAGGTGTGGGGTATCCAGCACTCTTTGTCTGTTCCACCACTGCTGTCGGAGTGAAGACTGGAGTTTCTTTGCTTGCCCACACGTCACACTTCAACATGTCATCAGGCTATTAAAGCAATTATTTGACTGCAA
>XM_043241624.1
TTATAACAGCTTTAAGAACTGTCCGATtctttcaatgcatttatttatgtttttgtattaaaaatacatgcagaTGTATTTCTGATATGTTACAAATGTATTCTCTAATATTTCCAACCATACCTTTTGTCATGCATGGGTGCATTTGATCTTGAGACAGTGGTGTTATGCTTATGTTGTGCTTTTGGCTTTTATAAGAAGTATGATAATTGTTCCCACTGTGTACAGTAGTACGCACAACAGCCACATGGACGGGTCACGTGACTGTCTTCATCTGAACAAAACCCAGGTGTCTCAGGGAACCACAAAGAGAGCAACCGACCTACCGTATGCCTAACTTTACAATGCTTCAGGTTACTTCACATGTTGCACACTTTGGCTCTACAAATGTGAATGTCCGGAACGTGGAAGATGGCAATAATTATGCGGAGCGGATAAACCGTGACAGACCCTGTTACCGATCTCTTTACGGCTCTGaggacacaaaacacaaaacggGAGAGACTGACAAGGACGGAAGCAACATAAGACCTCGTTCGAGATCATTTTATGTTTGTGACACGGACGATGCAGGAACGGGTGACTTTAGCAGATGCAGTCCTATCAGAGCGAGAGCGAGATCGCTGCACAGCGAGGATGGGGAAAGAAACACTGGAGGGACCGGTATCGCTGCAAAGCCTCCGCTCAAAAGAACTAAAGCAAACTCCAGCAAACGGGCCAGCAAGGACCTTACAGGAAATAAAGGAAGTTTAAAGGGCGTACCCATGATGACCATTTCGGAGGTGGATAACTGGGAGATAAGCTCTTCTTCTGGGATGAAATACGGTCAGTATGTCGACTGGGAAAAGATTGCCCCAGACGCAGCCGTCCGCTATCGGAAGATCCTCTCAAGTGATCATTACGTGCTCAAAGCAATGGGCCGTACAGGATTCTGGTCCATGCCTCATACTCTCAGAGCCAAGGCTTACCAGCACATCATCCACAGCATCGAGAGCACATCCAGCACCGCTGATCTGGACGCTTACCAAGGCTTGGTTAGAAAGCTTTTTGGGGAACTGCAAACAAGCACGCATCCTTTCCCAAAGTTTATGGAGGATGGAGAAATTCCCAGATACTGCCTAAATAAAGCGGGTCTGAATTCGGTgaaaaaaattctcatttgtATAAACCACCATTTTCCCGATGTCAGCTTCTGTCCCATTCTGTCCGCTCTGGTGTCTCTTCTCTTGCACTTCAGTGGGGATGAAGCCCAGTGTTTCCACAGTATCTGTTCCCTGGTGTCCTACACAGACGTTAAAAAGCGCTACATTGACCGGACTTTCCTCACTTCGCATGCCTCGTGCATGACCTTTGGTGACCTTGCCAATAAATACTGCAAGGGAATCCGGAAGCTTATAGCCAGCTCTCACCAGAACCTGTTTGAGTTCTACTCTGACTGGATCATGTGGATCTTCGCCGATCTGCCCTTCACGTACGCTATCAGAGTGCTGGACGTCTATCTAATGGAGGGCTACAAAGTTTTATACCGTGTAGCTCTTGCTCTGCTCAGCTTTTACAAGGTCTCTGTGGCTTCTCGAGTGGCCCACGTCGATGACTTCAGACAGGACATGAAGAGTTTTGTGCAGAATGTGGGACGGCACAGTACTGTCGACGCTCTGCTTCAGAGGGCTTTTGATATACAGCTGCCCACGCGTAAGGAACTGACTTACCTCTTCAATGCCAATAAGGAGGCACTGCTTCATAAGGACATCCACAGTAAGAGCTCATACCAATCTATGGATTTCCGGGCCTTCAGCTCCTCTGTAGTGACTGAAACGGAGATGAGGGTGGTCTGGGCCTGGATTCCAGAGAGATTTGCTCTGTTCAGTCCCGTGCAGCTATTCAGTACAAATATTCACGGCAGAAGTCTCTCCTTGTTTTACTCTAAAGTTGAGGGGCACGATCCAACTGTTTTACTCTTGAAAACCGAAGATGAGGAGATCTGCGGGGCTTTCCTGTCCTCTGATTGGGCTCAGAAGAACTGTGATGAAAAGGGGCTTAAGTTCTTTGGCACAGGagagtgttttgttttcacTGTGACTAAGACCGGGAATGGAGCTGTACCAGCGTACAGTGCTGCAGATCTCTGGGACGTCTGACAAATGTAATTCCTCCCATCAGAAGCAAACTCTCTCCACCAGCTCTCTGATGAGCACTCATGTGGACGGACCCGATGGAGCCTCTCTGAATCAAACATACGAGTCCGCATTATTCTGCACAATGTCAACGTTT
>XM_043241625.1
TTATAACAGCTTTAAGAACTGTCCGATtctttcaatgcatttatttatgtttttgtattaaaaatacatgcagaTGTATTTCTGATATGTTACAAATGTATTCTCTAATATTTCCAACCATACCTTTTGTCATGCATGGGTGCATTTGATCTTGAGACAGTGGTGTTATGCTTATGTTGTGCTTTTGGCTTTTATAAGAAGTATGATAATTGTTCCCACTGTGTACAGTAGTACGCACAACAGCCACATGGACGGGTCACGTGACTGTCTTCATCTGAACAAAACCCAGGTGTCTCAGGGAACCACAAAGAGAGCAACCGACCTACCGTATGCCTAACTTTACAATGCTTCAGGTTACTTCACATGTTGCACACTTTGGCTCTACAAATGTGAATGTCCGGAACGTGGAAGATGGCAATAATTATGCGGAGCGGATAAACCGTGACAGACCCTGTTACCGATCTCTTTACGGCTCTGaggacacaaaacacaaaacggGAGAGACTGACAAGGACGGAAGCAACATAAGACCTCGTTCGAGATCATTTTATGTTTGTGACACGGACGATGCAGGAACGGGTGACTTTAGCAGATGCAGTCCTATCAGAGCGAGAGCGAGATCGCTGCACAGCGAGGATGGGGAAAGAAACACTGGAGGGACCGGTATCGCTGCAAAGCCTCCGCTCAAAAGAACTAAAGCAAACTCCAGCAAACGGGCCAGCAAGGACCTTACAGGAAATAAAGGAAGTTTAAAGGGCGTACCCATGATGACCATTTCGGAGGTGGATAACTGGGAGATAAGCTCTTCTTCTGGGATGAAATACGGTCAGTATGTCGACTGGGAAAAGATTGCCCCAGACGCAGCCGTCCGCTATCGGAAGATCCTCTCAAGTGATCATTACGTGCTCAAAGCAATGGGCCGTACAGGATTCTGGTCCATGCCTCATACTCTCAGAGCCAAGGCTTACCAGCACATCATCCACAGCATCGAGAGCACATCCAGCACCGCTGATCTGGACGCTTACCAAGGCTTGGTTAGAAAGCTTTTTGGGGAACTGCAAACAAGCACGCATCCTTTCCCAAAGTTTATGGAGGATGGAGAAATTCCCAGATACTGCCTAAATAAAGCGGGTCTGAATTCGGTgaaaaaaattctcatttgtATAAACCACCATTTTCCCGATGTCAGCTTCTGTCCCATTCTGTCCGCTCTGGTGTCTCTTCTCTTGCACTTCAGTGGGGATGAAGCCCAGTGTTTCCACAGTATCTGTTCCCTGGTGTCCTACACAGACGTTAAAAAGCGCTACATTGACCGGACTTTCCTCACTTCGCATGCCTCGTGCATGACCTTTGGTGACCTTGCCAATAAATACTGCAAGGGAATCCGGAAGCTTATAGCCAGCTCTCACCAGAACCTGTTTGAGTTCTACTCTGACTGGATCATGTGGATCTTCGCCGATCTGCCCTTCACGTACGCTATCAGAGTGCTGGACGTCTATCTAATGGAGGGCTACAAAGTTTTATACCGTGTAGCTCTTGCTCTGCTCAGCTTTTACAAGGTCTCTGTGGCTTCTCGAGTGGCCCACGTCGATGACTTCAGACAGGACATGAAGAGTTTTGTGCAGAATGTGGGACGGCACAGTACTGTCGACGCTCTGCTTCAGAGGGCTTTTGATATACAGCTGCCCACGCGTAAGGAACTGACTTACCTCTTCAATGCCAATAAGGAGGCACTGCTTCATAAGGACATCCACAGTAAGAGCTCATACCAATCTATGGATTTCCGGGCCTTCAGCTCCTCTGTAGTGACTGAAACGGAGATGAGGGTGGTCTGGGCCTGGATTCCAGAGAGATTTGCTCTGTTCAGTCCCGTGCAGCTATTCAGTACAAATATTCACGGCAGAAGTCTCTCCTTGTTTTACTCTAAAGTTGAGGGGCACGATCCAACTGTTTTACTCTTGAAAACCGAAGATGAGGAGATCTGCGGGGCTTTCCTGTCCTCTGATTGGGCTCAGAAGAACTGTGATGAAAAGGGGCTTAAGTTCTTTGGCACAGGagagtgttttgttttcacTGTGGTGATGGTGGCCATGCGCTGAACCTGCAGGCTGATCTGACAGCCGGATCTTCTGAACACTGCCATACGTTTGAGAGCCCACCTCTCTGCAGGGGATGCTTCAAGATCCAGTCTCTAGAGGTGTGGGGTATCCAGCACTCTTTGTCTGTTCCACCACTGCTGTCGGAGTGAAGACTGGAGTTTCTTTGCTTGCCCACACGTCACACTTCAACATGTCATCAGGCTATTAAAGCAATTATTTGACTGCAA

Function

NR:

description
PREDICTED: TBC1 domain family member 24-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241623.1 True 2553 mRNA 0.47 7 10517118 10522694
XM_043241624.1 False 2271 mRNA 0.47 6 10517618 10522696
XM_043241625.1 False 2326 mRNA 0.47 6 10517118 10522696

Neighbor

gene id symbol gene type direction distance location
cfap52 cfap52,LOC107757424,LOC107659863,LOC107703996 coding downstream 154 10509922 ~ 10516964 (-)
grb2a grb2a,grb2,LOC107733915,LOC107728184,LOC107704009,LOC105012273,LOC107659857,LOC108441871 coding downstream 89708 10411701 ~ 10427410 (-)
mif4gda mif4gda,LOC107728181,LOC107561027,LOC107659858 coding downstream 105854 10408908 ~ 10411264 (-)
gga3a gga3,LOC107704010,LOC107573533,LOC107733910,LOC107659859 coding downstream 110661 10399345 ~ 10406457 (-)
sumo2a LOC107573531,LOC107733894,LOC107704011,LOC106574529 coding downstream 118487 10395173 ~ 10398631 (-)
LOC122346899 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 coding upstream 195185 10717881 ~ 10729269 (-)
sec16b sec16b coding upstream 407874 10930570 ~ 10943617 (-)
dr1 dr1,LOC107555385 coding upstream 462828 10985524 ~ 10988423 (-)
zgc:109982 LOC107678358,LOC106920129,LOC103368644,LOC103139842,LOC107733899,LOC105940069,LOC103463988 coding upstream 468279 10990975 ~ 10996060 (-)
scinla scinla,LOC107730699,LOC107675434,LOC107564434,LOC107678357,LOC107733908 coding upstream 473701 10996397 ~ 11005424 (-)
G44213 NA non-coding downstream 128676 10388044 ~ 10388442 (-)
G44210 NA non-coding downstream 140540 10376140 ~ 10376578 (-)
G44209 NA non-coding downstream 143550 10373170 ~ 10373568 (-)
G44208 NA non-coding downstream 144266 10372640 ~ 10372852 (-)
G44168 NA non-coding downstream 274609 10242210 ~ 10242509 (-)
G44338 NA non-coding upstream 58713 10581409 ~ 10582029 (-)
G44339 NA non-coding upstream 59337 10582033 ~ 10582284 (-)
G44341 NA non-coding upstream 123437 10646133 ~ 10653370 (-)
G44350 NA non-coding upstream 164364 10687060 ~ 10895352 (-)
G44353 LOC107569358,LOC107704001,LOC107555380,LOC107733907,LOC107757425,LOC107660462,LOC105019150,LOC108438877 non-coding upstream 171906 10694602 ~ 10904297 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 8115 10434204 ~ 10509003 (-)
LOC122347367 NA other downstream 158268 10355877 ~ 10358850 (-)
tnrc6c2 LOC107701838,LOC107566423,LOC107754870,LOC107591908,LOC107718711,LOC107698681 other downstream 273693 10204617 ~ 10243425 (-)
cd7al LOC107710016,LOC107553302,LOC107669545,LOC107698686,LOC107710292,LOC107591915,LOC107553301,LOC107710015 other downstream 371950 10138905 ~ 10145168 (-)
c6h17orf67 cunh17orf67,LOC107591943,LOC107669532,LOC107701203,LOC103044666 other downstream 489438 10025453 ~ 10027680 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other upstream 56293 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other upstream 187349 10710045 ~ 10716741 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other upstream 425996 10948692 ~ 10985132 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other upstream 532339 11055035 ~ 11069466 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other upstream 2003060 12525756 ~ 12897718 (-)

Expression


Co-expression Network