scinla (scinla,LOC107730699,LOC107675434,LOC107564434,LOC107678357,LOC107733908)


Basic Information

Item Value
gene id scinla
gene name scinla,LOC107730699,LOC107675434,LOC107564434,LOC107678357,LOC107733908
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10996397 ~ 11005424 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242415.1
agagagagtcATTGGCTGAGGACTCGCATCTGCCTCTCCCCTGAAAATACTCCGATCATTTAAAGTCGTCTCGCATCTGCTGAAACCTATGAAACTGAGTCTGGACTAAAAACCAGGAGCAGCTTCTCAAATCACATCTGTCTTCGTCGCCTTCTGTGCATTTCTTAGACCAGGAAGGAATCATGGTTTGCCACAAGGAGTTCCAGAATGCAGGCAAGCAGCCTGGTCTGCAGATTTGGAGGATAGAGAATATGGATCTGAAACCTGTCCCCAAACAACTGCTGGGAAACTTCTTCACTGGAGATGCCTATGTTGTCCTTTACACCACTCCTGCTCCATCCTACAATGTCCACATGTGGTTGGGTAATGAGTGCTCTCAAGATGAAAGTGGAGCAGCTGCCATCTTTGCTATGCAGCTGGATGATCATCTGGGTGGAGCACCAGTCCAGTACCGTGAGGTTCAGAACAACGAATCTGTCACTTTCATTGGCTACTTTAAAACTGGAATTAAGTACCAGCAAGGTGGTGTGGCCTCTGGATTCCAGCACGTGGTGACTAATGACATGAATGTGAGGCGCCTGCTTCATATTAAGGGGCGACGTGCCATTCGTGCCACAGAGGTGAAAATGTCTTGGGCCAGCTTCAATCACGGAGACTGCTTCATCATTGATCTCGGCAAGGACATCTATCAATGGTGTGGCAATGAAAGCAACCGTTTTGAGCGGTTGAAAGCCTCCGAGGTGGCTATTGGCATTCGTGATAATGAGAGAAATGGGCGTGCCAAGCTGCAGATGATTGAGGATGGTACTGAGCCAGAGGCTGTCCTTGCTgctCTTGGGCCTAAGCTCAACATCCCAGCAGGAAGCCCTGATGATGAGACAACTGACAGAAGCAATCAGAAAAAGGGCGCACTATACATGGTGTCTGATGCTGCAGGCTCTATGAAGACATCTCTGGTGTCCGAGGTAAGCCCTTTCAGACAACAAATGCTCAATCCCACTGAGTGCTTCATCCTAGACAATGGAGCAGACAGCAAGATCTTTCTTTGGAAAGGGTCAAACGCAAACCCTGAGGAACGTAAGGCAGCCATGAAGGTAGCTGAGCAGTTTATCAAAGACAAGAACTACCCTAAAAACACACAGATCCAGGTTATGCCCGCCGGAGGCGAGACCATACTGTTCAAGCAGTTCTTCAGTAACTGGAAGGATAAGGATCAAACCACAGGTCCCGGCCAGGCCTACAGCATTGGCCGCATTGCCAAAGTTTCACAGGTTCCCTTTGATGCCTCCAGTCTCCACTCCAACAAAACAATGGCTGCCCAGCATGGCATGGTGGACGATGGCTCCGGCAAGGTCCAGATATGGCGCGTAGAAGGCGGGGACAAAGTTCCTGTGGACCCTTCCAGCTATGGGCAGTTCTATGGAGGAGACTGTTACCTGATTCTCTACACCTATCGCCAGGGAAGCAGAGAGCAACACATTATATATACCTGGCAAGGACTGAAGTGTACACAAGATGAGCTGGCTGCCTCAGCTTTTCTAACAGTCAAGCTGGATGATTCTATGGGAGGGTCGCCTGTCCAGGTACGTGTCACTCAAGGCCAGGAACCGGCCCATTTGATGAGCCTGTTCAAAGGGAAACCCATGGTCATCCACATGGGTGGGACTTCACGAAAAGATGGTCAAAGTCAGGCTGGCAATACACGCTTTTTCCACATCCGCCAGAGCTCCACCCGTACGACACGCGCTGTGGAGGTGGAACCGACTGCATCTAAACTGAACACTAATGACGTGTTTGTGCTGAAGTGCCCCGGCGGTCTCTTTCTGTGGAAAGGGGTGGCTGCTTCAGAGGAAGAAATGGCTGCTGCTAAATACGTCTGCAGCTTCCTCGGAGGCAGTGCCACGGAAATATCAGAGGGAAAAGAGCCGGCTGGGTTTTGGACAGCTTTGGGTGGGAAGAAGGATTATCAAACTTCGAAAAGTCTGCAGAAAACTGTCAAAACTCCACGTCTCTTTGGTTGCTCCAACAAGACTGGACGTCTAATTGCTGAAGAAGTGCCTGGAGATTTTACTCAGTCTGATTTGGCCACTGATGATGTCATGCTGCTGGACACCTGGGATCAGGTCTTTGTTTGGATTGGTAACGATGCCAATGAGGTGGAGCGGAATGGAGCAGATAAAATAGCCAAAGAGTATGTGGATTCTGACCCCTCCGGTCGTCGTGGCACCCCGGTCGTCACTATCAAGCAAGGCTTTGAGCCCCCAACCTTCACTGGCTGGTTCCAGGCGTGGGACGCAAAGATGTGGAACACCGACCCACTGGATCGCATCCGCGGTCGTTTCTAAAAGCACGCGCATTAAGACACGCAAACCATTATATACTTTTGCGTAGCTTTCAGAATACTCACCTCTTGTGTTTCATGCATTGGTGGTCTATAAAGGATGCAGATGGAAACACAGTATGCAATAACGGGGAcgcttaatttctagcgattgtcgtcgatttgattacatAGAGCATCTCTGcataaaaatgaagtgtttaatctcgtcattatacattactatctcTCTATTCTCCTGTTAGATAGATTGcgtcagtgctttgacacagtctgtattgttaaaagcgctacataagtgattgattgataatgTTGCATGTTAAACCATTATGTCCTGTATTTTGCTACTATTAATGACCTTTTGCCTTGTTCACTTCTACACATTGACTTTGCCTTTTTTATACAATTACActctttatattttcttttatatactTTGGTATTCCAGTGACATTTTCGACTGTATGGTCTTTaggatttttaaaagaatattaaaataaaatggaaaatgttgttttttttatataagcaaGACTataacatttgtttgtattCGACAACTTGCTGCCATTTGATTACTAAAAACTGTACACGTGTATGGATTATGCCTCATAAACTGGCGAATTGAAATATCTGAGAGAATATACTGTAGTtgctgaaaatgattttaatgtatcTCTACAGTTATAGCTATCccagtatataataataacagcaataaaaaactttttcaaatac

Function

symbol description
scinla Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Acts upstream of or within brain development; dorsal/ventral pattern formation; and eye development. Predicted to be active in actin cytoskeleton and cytoplasm. Is expressed in several structures, including corneal epithelial cell; median fin; nervous system; periderm; and solid lens vesicle.

NR:

description
gelsolin-like

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242415.1 True 3082 mRNA 0.46 17 10996397 11005424

Neighbor

gene id symbol gene type direction distance location
zgc:109982 LOC107678358,LOC106920129,LOC103368644,LOC103139842,LOC107733899,LOC105940069,LOC103463988 coding downstream 337 10990975 ~ 10996060 (-)
dr1 dr1,LOC107555385 coding downstream 7974 10985524 ~ 10988423 (-)
sec16b sec16b coding downstream 52780 10930570 ~ 10943617 (-)
LOC122346899 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 coding downstream 267128 10717881 ~ 10729269 (-)
LOC122346769 LOC107733892,LOC107555367,LOC107703995 coding downstream 473701 10517118 ~ 10522696 (-)
si:ch73-389b16.1 si:ch73-389b16.1 coding upstream 5574 11010998 ~ 11013344 (-)
btbd8 si:ch73-389b16.2,LOC107749984,LOC107678356,LOC107675433,LOC107730686,LOC107555388,LOC107564439 coding upstream 11468 11016892 ~ 11041029 (-)
ephx4 ephx4,LOC107555389,LOC107564433,LOC107678348,LOC107730701,LOC107749983,LOC107675432 coding upstream 36622 11042046 ~ 11054847 (-)
znf326 znf326,LOC107749979,LOC107698885,LOC107564631,LOC107555393 coding upstream 404638 11410062 ~ 11414618 (-)
lrrc8db LOC107749977,LOC107730703,LOC107698886,LOC107564626,LOC107675437,LOC107555394 coding upstream 409844 11415268 ~ 11424793 (-)
G44353 LOC107569358,LOC107704001,LOC107555380,LOC107733907,LOC107757425,LOC107660462,LOC105019150,LOC108438877 non-coding downstream 92100 10694602 ~ 10904297 (-)
G44350 NA non-coding downstream 101045 10687060 ~ 10895352 (-)
G44341 NA non-coding downstream 343027 10646133 ~ 10653370 (-)
G44339 NA non-coding downstream 414113 10582033 ~ 10582284 (-)
G44338 NA non-coding downstream 414368 10581409 ~ 10582029 (-)
G44447 NA non-coding upstream 227027 11232451 ~ 11232784 (-)
G44449 NA non-coding upstream 229066 11234490 ~ 11234694 (-)
G44450 NA non-coding upstream 229451 11234875 ~ 11235096 (-)
G44452 NA non-coding upstream 232538 11237962 ~ 11238198 (-)
G44457 NA non-coding upstream 233695 11239119 ~ 11239464 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 11265 10948692 ~ 10985132 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other downstream 160872 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other downstream 279656 10710045 ~ 10716741 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 487394 10434204 ~ 10509003 (-)
LOC122347367 NA other downstream 637547 10355877 ~ 10358850 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other upstream 49611 11055035 ~ 11069466 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other upstream 1520332 12525756 ~ 12897718 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other upstream 2649836 13655260 ~ 13681294 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 2712778 13718202 ~ 13785903 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 3155051 14160475 ~ 14193166 (-)

Expression


Co-expression Network