LOC122347277 (endou)


Basic Information

Item Value
gene id LOC122347277
gene name endou
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15691262 ~ 15695534 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242474.1
atgcCGAACGAAACCGGGAACTGTTTCTTAAAACTAAGACTAACTGAAATAGGCCTGACCTACCAAATAGTTTGTGCGTCTGGATCGTCTGAAGTTCATGATGAAGATCTCCTCATCCTCTTTCTCACCATCACCCTGATCTCTCAGGGCCACACTGCATTAGCCAGTGTCTCTGACGCTGAGATCAAATCTCTGTCTGAGACGCTGTACAAGTTAGACCATAACAGGGCCACAGCCTCAGAGCTGGTCATTGATCCTCAGACACTGATCTCTTCATCTGAGACCAGCTCGAAGGATGACCACTCATCTCACCCATTGTTCAAGCAAGTGAGTAGTACTTTGCTCTCCAAGCCCACATATAAAGCTCTGTTGAATCTGCTGGACAACTATAAAAGGATGACCGGGGAAGTGGAGGATGTGCCCTCACAGGAAGAGCAGGAGCAGGACACTTTCCTCCAGCAGGCCATGAACACCGATGTGGGCAAGGAGCTTTATAATTTCCTTCACTCCAAAGGTATATACTCATCACAGAGCGAGTTTATCCAGGATCTGAAGATGATGTGGTTTGGTCTTTACTCTCGATCTAGCGGCAAACTGGACTCCAGCGGGTTTGAGCACATCTTTGCAGGGGAAATTAAGGGTGGAAAGGTATCTGGTTTCCACAACTGGCTGCAGTTTTATCTAAATGAGAAACAGGGACTCCTGAATTACTACAGCCATAGTTTTAATGGCCCTTGGACCTCCTATCCCGATGTATTGGGAATGCAGTTTGAATGGGATGGCTATTTCAAAGAGGTTGGTTCTGCCTTTATTGGCTCTAGTCCTGAGTTTGACCTGGCTATCTACAGTCTCTGCTACATCACTCGCTCTGGCAAGAAGTGTTATGTGAGTCTGGGGGGACAGACTCTGGGCATTCAGACCTATACGTGGGACAACAGCAGCTATGGGGATGGAAAGAAGTACATTGCCTCGGCTTACCCTGCCACACCATGATTTCCTCTCACCTGAATATCAGTATCAACAGACTCACAACCAAAACAACTCATATGTAATCTTGTAATTCTTCTCTTGGTTGTTCGAGGTTGTTGTTgaaccaaataaaacaacaatagaaaAATG

Function

symbol description
endou Predicted to enable RNA binding activity and endoribonuclease activity. Predicted to be located in extracellular region. Orthologous to human ENDOU (endonuclease, poly(U) specific).

NR:

description
PREDICTED: poly(U)-specific endoribonuclease isoform X2

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0006955 immune response biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0005576 extracellular region cellular_component
GO:0004521 endoribonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0030247 polysaccharide binding molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
K14648 ENDOU, PP11; poly(U)-specific endoribonuclease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242474.1 True 1119 mRNA 0.46 9 15691262 15695534

Neighbor

gene id symbol gene type direction distance location
LOC122346598 LOC107673517,LOC107711045,LOC107580698 coding downstream 87814 15601432 ~ 15603448 (-)
LOC122346414 uroc1 coding downstream 90416 15594363 ~ 15600846 (-)
sgip1a sgip1,LOC107659047 coding downstream 297139 15344929 ~ 15394123 (-)
LOC122346434 pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369 coding downstream 357329 15331236 ~ 15333933 (-)
LOC122346855 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634 coding downstream 435102 15246429 ~ 15256160 (-)
mast2 mast2,LOC107717134,LOC107692432 coding upstream 456612 16152146 ~ 16253840 (-)
tmem69 tmem69,LOC107731626,LOC107684288,LOC107725194,LOC107594642,LOC107692399,LOC107579605 coding upstream 559107 16254641 ~ 16256080 (-)
LOC122347419 nasp,LOC107551040,LOC107725201,LOC107594614,LOC107731628 coding upstream 576483 16272017 ~ 16277301 (-)
akr1a1b akr1a1,akr1a1b,LOC107725198,LOC107692407,LOC107731642,LOC107684038 coding upstream 582323 16277857 ~ 16280917 (-)
prpf38a prpf38a,LOC107731643,LOC107725199,LOC107692408,LOC107684051 coding upstream 585855 16281389 ~ 16284146 (-)
G45602 NA non-coding downstream 45866 15644069 ~ 15645396 (-)
LOC122347411 efcab12 non-coding downstream 99066 15591067 ~ 15592196 (-)
LOC122347378 NA non-coding downstream 103040 15587506 ~ 15588222 (-)
LOC122347074 NA non-coding downstream 110207 15580584 ~ 15581055 (-)
G45554 NA non-coding downstream 202161 15486663 ~ 15489101 (-)
LOC122347156 NA non-coding upstream 147597 15843131 ~ 15877467 (-)
G45709 NA non-coding upstream 206682 15902216 ~ 16118586 (-)
G45751 NA non-coding upstream 571649 16267183 ~ 16267542 (-)
G45752 NA non-coding upstream 573381 16268915 ~ 16269392 (-)
G45753 NA non-coding upstream 575368 16270902 ~ 16271108 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other downstream 5777 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other downstream 85792 15603910 ~ 15605470 (-)
insl5a LOC107692440 other downstream 200577 15489118 ~ 15490685 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other downstream 360411 15327583 ~ 15330851 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 1498096 14160475 ~ 14193166 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 60775 15756309 ~ 15765107 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other upstream 363434 16058968 ~ 16059767 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other upstream 364359 16059893 ~ 16060466 (-)
fam183a fam183a,LOC107551015 other upstream 665633 16361167 ~ 16364020 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other upstream 1121106 16816640 ~ 16830261 (-)

Expression


Co-expression Network