prpf38a (prpf38a,LOC107731643,LOC107725199,LOC107692408,LOC107684051)


Basic Information

Item Value
gene id prpf38a
gene name prpf38a,LOC107731643,LOC107725199,LOC107692408,LOC107684051
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16281389 ~ 16284146 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242791.1
TGTTCCCCGGAAGACGTTCTTCGATATTTCTCCATGGCATATTAGCGTCCCGATTTTCCGTTCGTTCGTTTACAATTTTGAATCATGGCTAATAGGACGGTAAAAGATGCCAATAGCATACATGGAACAAACCCTCAGTATCTTGTCGAGAAGATTATACGAACACGTATTTATGAGTCCAAGTACTGGAAAGAGGAGTGTTTTGGACTTACAGCTGAACTCGTCGTGGACAAAGCGATGGAGCTGAAGTTTGTTGGTGGTGTATATGGAGGAAACATCAAGCCTACTCCATTCTTATGTCTGACCCTAAAGATGCTGCAGATCCAGCCCGAAAAGGACATTATTGTGGAATTCATCAAGAATGAAGACTTCAAGTACGTCCGTTTGCTTGGAGCTATGTATATGCGCCTGACCGGAACTTCTGTAGATTGCTACAAGTATTTAGAACCGTTATATAATGACTACAGAAAAATTAAAAGCCAGAACAGAAATGGAGAGTTTGAGTTGATGCATGTCGATGAGTTTATAGATGAGTTGCTTCAtgcagagagagtgtgtgacaTCATCCTCCCTAGACTTCAGAAGAGACAGGTCTTGGAGGAAGCTGAGCTGCTGGATGCTCGTATTAGTGCTCTGGAAGAAGATCTGGATGAAGTGGAAACCAgtgatgaggaggatgaggaagaagagAAGCCAGAGAGAGTGCAAACACCAGAGCCACACAGAAGAAGTTACAGAGATATGGACCGACCACGCAGGTCTCCTTCTCCTCGCTACAGACGCAGCCGCTCACCCAGGAGaCGAAGCAGGTCACCTAAAAGGCGAAGTCCATCACCCAGGCGGGATCGGGATCGGGATCGTCACCGCAGCAAAAGTCCCCGCAGACACCGCAGCAGATCCAGGGACAGAAGGCATCGCTCCAAATCTCCAGGTCACCACAGAAGTCACCGGCATCGCAGTCACTCCAAGTCCCCAGAAAGTCGGTCAAAGAAGAGTCACAAAAGAAGTCGAAGAGGAAATGAGTGATCTCGGTTTTctgtctgattatttttttttttttccccaacttgttttatagatattttttgcTCTGTAATGTATGGAGAAACACAGAAATATCTGTCACAAAAAGCTTGTTCTTATTCTGTGTAAATTGCTCAAGCCCAATTTAGTCCtcttaatttactttttaatgccGTTTTATACTTTTCattgaaatttacattttttttccatcctgAATTAACTGtactgtgaaaaataaacatttgatggTCTTGTA

Function

symbol description
prpf38a Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type precatalytic spliceosome. Orthologous to human PRPF38A (pre-mRNA processing factor 38A).

NR:

description
pre-mRNA-splicing factor 38A

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12849 PRPF38A; pre-mRNA-splicing factor 38A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242791.1 True 1282 mRNA 0.43 10 16281389 16284146

Neighbor

gene id symbol gene type direction distance location
akr1a1b akr1a1,akr1a1b,LOC107725198,LOC107692407,LOC107731642,LOC107684038 coding downstream 472 16277857 ~ 16280917 (-)
LOC122347419 nasp,LOC107551040,LOC107725201,LOC107594614,LOC107731628 coding downstream 4088 16272017 ~ 16277301 (-)
tmem69 tmem69,LOC107731626,LOC107684288,LOC107725194,LOC107594642,LOC107692399,LOC107579605 coding downstream 25309 16254641 ~ 16256080 (-)
mast2 mast2,LOC107717134,LOC107692432 coding downstream 27549 16152146 ~ 16253840 (-)
LOC122347277 endou coding downstream 585855 15691262 ~ 15695534 (-)
mpl mpl,LOC107725197,LOC107594610,LOC107551019,LOC107725192 coding upstream 8049 16292195 ~ 16298925 (-)
tie1 tie1,LOC107731644,LOC107684058,LOC107725190 coding upstream 15433 16299579 ~ 16311653 (-)
LOC122347428 tmem125,LOC107725195,LOC107684333,LOC107551025,LOC107594640 coding upstream 56159 16340305 ~ 16350269 (-)
dmrt2b dmrt2b,LOC107684342,LOC107551024,LOC107692445 coding upstream 100190 16384336 ~ 16388414 (-)
mier1a mier1,LOC107758364,LOC107724131,LOC107684256,LOC107551013,LOC107692413 coding upstream 279804 16563950 ~ 16570461 (-)
G45753 NA non-coding downstream 10281 16270902 ~ 16271108 (-)
G45752 NA non-coding downstream 11997 16268915 ~ 16269392 (-)
G45751 NA non-coding downstream 13847 16267183 ~ 16267542 (-)
G45709 NA non-coding downstream 162803 15902216 ~ 16118586 (-)
LOC122347156 NA non-coding downstream 403922 15843131 ~ 15877467 (-)
G45770 NA non-coding upstream 36267 16320413 ~ 16322805 (-)
G45897 NA non-coding upstream 903310 17187456 ~ 17187794 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding upstream 1230492 17514638 ~ 17518605 (-)
G45993 NA non-coding upstream 1523475 17807621 ~ 17808115 (-)
G46000 NA non-coding upstream 1538390 17822536 ~ 17822735 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other downstream 220923 16059893 ~ 16060466 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other downstream 221622 16058968 ~ 16059767 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other downstream 516282 15756309 ~ 15765107 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other downstream 595904 15535386 ~ 15685485 (-)
fam183a fam183a,LOC107551015 other upstream 77021 16361167 ~ 16364020 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other upstream 532494 16816640 ~ 16830261 (-)
G45895 NA other upstream 902543 17186689 ~ 17187318 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other upstream 951644 17235790 ~ 17246386 (-)
G45910 NA other upstream 1023669 17307815 ~ 17308478 (-)

Expression


Co-expression Network