G28905


Basic Information

Item Value
gene id G28905
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8673758 ~ 8674201 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32684
CTCCCCTCACTTACCAGGTTCCACTCTATCATCTCAGGACCTAAAGTGGGACAATCACATTGACTCCACTGTCAAAAAGGCCCAGCAGAGGTTATACTTCCTTCGCCAGCTGAGGAAGTTCAACTTGCCACAGGCCCTGCTGATGCAGTTCTACTCATCCGTCATTGAGTCTGTCCTCTGCACTTCAATAACTGTCTGGTTTGGCTCAGCTACAAAATCAGACATCAGAGACTAGAGGACTGTTTGGACTGCTGAGAGGATTATTGGAGCTCCCCTGAACTGCACTTCAAGAACTGTATACACCCAGAGAGAGAAAAGGGGCTCATAAAATCACATAAAATCACTCTGGGTCCCTCACATCCAAGCCACCTTCTCTTTGAACTTTTGCCGTCTGGCCAGCGCTACAGAGCATCAGAACAGCCAGGCACAAGAAATGTTCCTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32684 True 444 lncRNA 0.36 1 8673758 8674201

Neighbor

gene id symbol gene type direction distance location
CI01000004_08618566_08669147 NA coding upstream 4611 8618566 ~ 8669147 (+)
CI01000004_08573940_08586930 NA coding upstream 86588 8572741 ~ 8587170 (+)
CI01000004_08518587_08521540 EIF5A2, EIF5A.L, EIF5A coding upstream 152097 8518462 ~ 8521661 (+)
CI01000004_08507941_08515797 SLC2A2 coding upstream 157450 8507941 ~ 8516308 (+)
CI01000004_08458998_08503889 TNIK, TNIKA coding upstream 169766 8458998 ~ 8503992 (+)
CI01000004_08693419_08703448 PLPPR3A coding downstream 19218 8693419 ~ 8704156 (+)
CI01000004_08730011_08731219 PALM1B coding downstream 55810 8730011 ~ 8732509 (+)
CI01000004_08736175_08742487 PTBP1B, PTBP1, PTBP1A coding downstream 61974 8736175 ~ 8744387 (+)
CI01000004_08746864_08765484 NA coding downstream 72283 8746484 ~ 8765905 (+)
CI01000004_08806791_08812203 NA coding downstream 132590 8806791 ~ 8812562 (+)
G28904 NA non-coding upstream 295 8673221 ~ 8673463 (+)
G28872 NA non-coding upstream 57223 8616221 ~ 8616535 (+)
G28867 NA non-coding upstream 67173 8606314 ~ 8606585 (+)
G28863 NA non-coding upstream 69831 8603605 ~ 8603927 (+)
G28862 NA non-coding upstream 70297 8603095 ~ 8603461 (+)
G28909 NA non-coding downstream 8506 8682707 ~ 8683005 (+)
G28933 NA non-coding downstream 187034 8861235 ~ 8861910 (+)
G28947 NA non-coding downstream 208195 8882396 ~ 8882600 (+)
G28955 NA non-coding downstream 221261 8895462 ~ 8896242 (+)
G28959 NA non-coding downstream 231971 8906172 ~ 8906381 (+)
G28859 NA other upstream 74155 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 222531 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 1017375 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 2099337 6570771 ~ 6572667 (+)
G28302 NA other upstream 2171671 6470028 ~ 6502087 (+)
CI01000004_08976512_08980033 TTPA other downstream 302237 8976254 ~ 8980984 (+)
G30797 NA other downstream 1823175 10497376 ~ 10497788 (+)
G31710 NA other downstream 2963050 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 2990572 11666900 ~ 11667659 (+)
G31865 NA other downstream 3517929 12192130 ~ 12197418 (+)

Expression


Co-expression Network