G60788 (lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894)


Basic Information

Item Value
gene id G60788
gene name lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3848614 ~ 3850557 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU89939
GCTGCAGCCAAGCACAGATCTTATAGACGGTTGCTGCATTGCAGAATCTGAAGAGACACAGGCAGCCCACGCTGGCCCACACCATGGTCAGAGACATGCAGACCAGCACAGCGGGAGACTGGAAGGCAGGGAGCGGGGTCAGGGTGTGGAGAGACCCCCGGCATTCTGGGACGGGCCAGTCCGTCTCCATACAGACCTCAAAGAGGCCCAGCGTCCCGGTCGGAGGAGCCGGACCCCCTTCCCGGAAGTGCAGCTCACGTGTGCCCACCCACGACGGCTGGATGAGAATGACCACCTCGATCACGGCGAAGCAGAGCGTGCAGACGGCCCACAGCACACCCACCGCCCGAGCGCTCCGGATGAACTCGGTCTGATACAGACGGGCCACCTCAGACGAGTGATGCTGCATGCTGGAGCCTGGTGAATGAAGAGATGGATGAAGGGAGCTTCACCTCTCTGCTTTGGCTGATTCCAGGTCTCTTCCTCCCACCACAGGATCTGGAGGACaaaaatctcattaaaattGAATGGCTCGAGAGCAGCATCACGCAAAAATGTAGGAGTGAGCGAAAGAGAGAAATTGACCCGAATGGAGGgattcttctcctcctcttcctcccggAGGGATCAAGGCAGGATGTGCGACATTAAAACAGGCCCACGCCGCTCGCAACCATCTTCCTCGCAC

Function

symbol description
lhfpl4b Predicted to be involved in sensory perception of sound. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human LHFPL4 (LHFPL tetraspan subfamily member 4).

NR:

description
PREDICTED: lipoma HMGIC fusion partner-like 3 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89939 True 688 TUCP 0.58 2 3848614 3850557

Neighbor

gene id symbol gene type direction distance location
pcsk1nl pcsk1nl,LOC107743122,LOC107552210,LOC107701826,LOC107584871,LOC107674382 coding upstream 2669 3835796 ~ 3845945 (+)
LOC122350007 LOC107552172 coding upstream 14460 3828509 ~ 3834154 (+)
LOC122350989 LOC107751585,LOC107696922,LOC107552208,LOC107584868,LOC107674323,LOC107584869 coding upstream 40767 3800278 ~ 3807847 (+)
slc6a6a slc6a6a,LOC107696920,LOC107552205,LOC107714566,LOC108264963,LOC107674322 coding upstream 83526 3743485 ~ 3765088 (+)
abtb1 abtb1,LOC107674366,LOC107696919,LOC107751593 coding upstream 111510 3726570 ~ 3737104 (+)
fgd1 fgd1,LOC107552218,LOC107727417 coding downstream 82233 3932790 ~ 3979201 (+)
tfe3a tfe3a,LOC107584878,LOC107727418,LOC107743115,LOC107701807,LOC107674333 coding downstream 129222 3979779 ~ 3994876 (+)
cxxc1a cxxc1a,LOC107701818,LOC107743112,LOC107727409,LOC107674299,LOC107577056 coding downstream 157031 4007588 ~ 4012823 (+)
mbd1a LOC107743107,LOC107701816,LOC107552163,LOC107584915,LOC107727404 coding downstream 163357 4013914 ~ 4027702 (+)
abcd1 abcd1,LOC107701814,LOC107743108,LOC107552221,LOC107727428,LOC107674359,LOC108265308 coding downstream 224461 4075018 ~ 4091029 (+)
G60782 NA non-coding upstream 22198 3824902 ~ 3826416 (+)
G60743 NA non-coding upstream 192682 3654761 ~ 3655932 (+)
LOC122350949 NA non-coding upstream 240637 3607315 ~ 3607977 (+)
G60728 NA non-coding upstream 268632 3579502 ~ 3579982 (+)
G60718 NA non-coding upstream 278330 3569494 ~ 3570284 (+)
G60803 LOC107552212,LOC107701823,LOC107743103,LOC107674315,LOC107727414 non-coding downstream 34325 3884882 ~ 3885873 (+)
G60870 NA non-coding downstream 57155 3907712 ~ 3908800 (+)
G60895 NA non-coding downstream 290052 4140609 ~ 4215206 (+)
G61007 NA non-coding downstream 451115 4301672 ~ 4342107 (+)
G61048 NA non-coding downstream 582441 4432998 ~ 4436499 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 1808778 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 1812634 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 1828580 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 1930243 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 2629810 1210815 ~ 1218804 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 74304 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 178746 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 1254013 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 1376395 5226952 ~ 5229608 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 2905548 6756105 ~ 6766543 (+)

Expression


Co-expression Network