G28933


Basic Information

Item Value
gene id G28933
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8861235 ~ 8861910 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU32714
TTATTTTTATTTTGAGGACATAATCCATTTAAAAAATTGAGGAAGTGCTCAGTAACTACTTTGTTCATCTTAACATTTCATCAACTTACTTGTTCAACACCACAAAAACAAAGACGGCAAGGCATGCTGATATGACATAAGGCAACTTGAGTTCTGTATAGGCAATATACAATCTGTTAGATACAATCCTGAGATCTATTATATCAAATACATTATCATGTACAAAAGAAGCTAAACCAAACGATTAGCTCTTGGCATGGAAGTCCTAGGTTTACAGGTTCACTGTTTGAATCTCCCAAGAAGTTCTCTTGAGATGATGAGCCTTTGGATTTGAGCAGTCCCTTCATAAATCTGGTAAATCTTAGCGTCTCTCATCAGCTTCTCCACAGGATATTCACTATTGAAACCGTTCCCACCAAAGATCTGGACAGCATCAGTGGCACACTGGTTTGCAATGTCTCCGGCAAAGGCCTTGGCAATCGAAGCATAGTAGGTGTTCCTGCGGCCCTCATCCACTTCCCAAGCTGCTCTCTGATAGGCCATCCTGGCAAGCTCCACTTTCATGGCCATTTCAGCCAGAAGGAATGACACTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU32714 True 595 lncRNA 0.41 2 8861235 8861910

Neighbor

gene id symbol gene type direction distance location
CI01000004_08823382_08844233 NA coding upstream 16890 8822749 ~ 8844345 (+)
CI01000004_08806791_08812203 NA coding upstream 48673 8806791 ~ 8812562 (+)
CI01000004_08746864_08765484 NA coding upstream 95330 8746484 ~ 8765905 (+)
CI01000004_08736175_08742487 PTBP1B, PTBP1, PTBP1A coding upstream 116848 8736175 ~ 8744387 (+)
CI01000004_08730011_08731219 PALM1B coding upstream 128726 8730011 ~ 8732509 (+)
CI01000004_08866163_08873681 HECTD3 coding downstream 4124 8866034 ~ 8873796 (+)
CI01000004_08875722_08877149 GM11353, RPS8A, RPS8 coding downstream 13812 8875722 ~ 8877507 (+)
CI01000004_08947119_08949558 NA coding downstream 85209 8947119 ~ 8949644 (+)
CI01000004_08976512_08980033 TTPA coding downstream 114344 8976254 ~ 8980984 (+)
CI01000004_08987501_08991239 NA coding downstream 125248 8987158 ~ 8991469 (+)
G28909 NA non-coding upstream 178230 8682707 ~ 8683005 (+)
G28905 NA non-coding upstream 187034 8673758 ~ 8674201 (+)
G28904 NA non-coding upstream 187772 8673221 ~ 8673463 (+)
G28872 NA non-coding upstream 244700 8616221 ~ 8616535 (+)
G28867 NA non-coding upstream 254650 8606314 ~ 8606585 (+)
G28947 NA non-coding downstream 20486 8882396 ~ 8882600 (+)
G28955 NA non-coding downstream 33552 8895462 ~ 8896242 (+)
G28959 NA non-coding downstream 44262 8906172 ~ 8906381 (+)
G28968 NA non-coding downstream 60573 8922483 ~ 8922685 (+)
G28969 NA non-coding downstream 60812 8922722 ~ 8922940 (+)
G28859 NA other upstream 261632 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 410008 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 1204852 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 2286814 6570771 ~ 6572667 (+)
G28302 NA other upstream 2359148 6470028 ~ 6502087 (+)
G30797 NA other downstream 1635466 10497376 ~ 10497788 (+)
G31710 NA other downstream 2775341 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 2802863 11666900 ~ 11667659 (+)
G31865 NA other downstream 3330220 12192130 ~ 12197418 (+)

Expression


Co-expression Network