LOC122350671 (fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583)


Basic Information

Item Value
gene id LOC122350671
gene name fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6423742 ~ 6442982 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU91179
NttttttttgtgtgtgtgcgtgtgcgtttTGAGTTGGCTTGGATATGCGCGCGCGCGTCGACTTGATTCCCGCCGCTACTTAGCGTGGAATATCCGAGGACTTTACTCAACGCtccagaagaaaagaaaaatactttgAAGTGCTATGGGAATTTGAGgagtttgtttatttagctattttccTTAAGATGCGTGTGGGGCGAGAGTCTTCGCCGCCCCTTTTTAGACCagaattagtcagcgtggtcccGGAGTAGAGGCTAGATCGGTGTCTTCTCGATCTCACGCACTCTCCTCGCTCTCCTTTTCTTCATCCCCCTCCTAAGNGTGTCTTGCCTCTCCTCCccccccccaccaccaccaccaccgccGCCTGTAACTGACAGGCGGTTCAAGGTTTGTTCTTCTCCGGAGAATGCTCAATGATCGATGGGGAATCATGAACAGCTCACCGGAACTCGAAGACGGACAGCGGGGCAAGAATCAGAGGATGAGTTGTAGCTATCTGCTTTGTACCATCCTGCTTTTCGTGGCCGTTCTGCTCGCAGTCACAGTGACGGGAACCATTCTTCTCATGAACCACTACCAGGCCCCGCCCATGTCGGACGGCCCCCCTCATATTAGCACAAACCAGGACGAAGCCAATGCGTTGGTGACAGTCGAGAGGGGTGATGGATCACGCATCAATATCTTCATCGACCCCAACTGCCCTGATTATAACAGTAATTTCCTGCGGCTCGAAGGCGTGCAGACGTCTTTGCTGCATTCGCTCACCGACCACGATACGGATCTCAAGTCCGTCAAAGGTCAGGATCGAGCGCTATTGGTCAACTTGGCAGAGGAAGTTGCTAAGCTGTCTGCCCACGCGGGACAGCTGAAGATGGACTATGAGTCTCTCAGAAGAGGACAAAGCAACCTGGGACAGGATCTGAATACACTGCAGACTGAACAGAGCAGACTTATACAGCTGCTGTCCGAGAGCCAGATTAACATGGTGAAGGTTGTCAACTCTGTGAGCGATGCTCTAAATGCCATGCAGAAGGAAACTGGAGGTTTGAAGGCCAGGGTGAAGGCTGACCTGCAGAGGGCGCCAGTCAGAGGAGTCCGTCTTAAAGGCTGTGCTAATG
>XM_043247349.1
TGCCTCTCCTCCccccccccaccaccaccaccaccgccGCCTGTAACTGACAGGCGGTTCAAGGTTTGTTCTTCTCCGGAGAATGCTCAATGATCGATGGGGAATCATGAACAGCTCACCGGAACTCGAAGACGGACAGCGGGGCAAGAATCAGACATTCTGTGAGTGTGTGCCCAACTCTTCTCAGCTCAAACATCGCTGGTCAGACTCAGACACAGTCAGACAAACACCGCCCAAGAGGATGAGTTGTAGCTATCTGCTTTGTACCATCCTGCTTTTCGTGGCCGTTCTGCTCGCAGTCACAGTGACGGGAACCATTCTTCTCATGAACCACTACCAGGCCCCGCCCATGTCGGACGGCCCCCCTCATATTAGCACAAACCAGGACGAAGCCAATGCGTTGGTGACAGTCGAGAGGGGTGATGGATCACGCATCAATATCTTCATCGACCCCAACTGCCCTGATTATAACAGTAATTTCCTGCGGCTCGAAGGCGTGCAGACGTCTTTGCTGCATTCGCTCACCGACCACGATACGGATCTCAAGTCCGTCAAAGGTCAGGATCGAGCGCTATTGGTCAACTTGGCAGAGGAAGTTGCTAAGCTGTCTGCCCACGCGGGACAGCTGAAGATGGACTATGAGTCTCTCAGAAGAGGACAAAGCAACCTGGGACAGGATCTGAATACACTGCAGACTGAACAGAGCAGACTTATACAGCTGCTGTCCGAGAGCCAGATTAACATGGTGAAGGTTGTCAACTCTGTGAGCGATGCTCTAAATGCCATGCAGAAGGAAACTGGAGGTTTGAAGGCCAGGGTGAAGGCTGACCTGCAGAGGGCGCCAGTCAGAGGAGTCCGTCTTAAAGGCTGTGCTAATGGCCTAATGTGTCTGAAAGCATTTTACCACTTTACTTTTAAGGCCTTGATGTGTCTGCTGGAGCCACAGGTGTGGATTGTAATGAACCTCAGTATGGAGCAGACACTTGTCTACTGTGATATGAGCACGGACGGAGGTGGCTGGACGGTGATTCAACGCAGAGAAGATGGCTCTGTTAACTTTTTCCGTGACTGGGAAGCTTATCGTGAAGGATTTGGCAAGATAACGGGAGAGCATTGGCTTGCTTTGATGAACTATGACAGGCCCGTCACAGACTGTCATCTTGGAGAGATTGACGGCTTCACAGCTAGTGCAGGACAGCGCTGGCTAGCAGCGTCTCTCGCGCCCGCTGTGGCTGAGAATGACTTTTCCCACGGCCTGCTCGTTTTTCTTCACAGGGTTCGGGTCCCCTTGGGCAAGCCCAGGACGGAACAGTCCTCCCTGGAGTGA

Function

symbol description
fibcd1 Enables chitin binding activity. Predicted to be involved in cell adhesion. Located in membrane.

NR:

description
PREDICTED: fibrinogen C domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91179 False 1127 TUCP 0.52 3 6431032 6442982
XM_043247349.1 True 1327 mRNA 0.53 9 6423742 6442649

Neighbor

gene id symbol gene type direction distance location
LOC122351122 si:dkeyp-51b7.3,fibcd1,LOC107598982,LOC107665003,LOC107725318,LOC108438350,LOC107557183,LOC106585783 coding downstream 224462 6108592 ~ 6199280 (-)
traf1 traf1,LOC107599053,LOC107664983,LOC107709033,LOC107674383,LOC107557184 coding downstream 318466 6094051 ~ 6105276 (-)
phf19 phf19,LOC107599052,LOC107757290,LOC107674297,LOC107557185 coding downstream 332131 6063268 ~ 6091611 (-)
med27 med27,LOC107557205,LOC107665006,LOC107757301,LOC107725311 coding downstream 641471 5735521 ~ 5782271 (-)
rapgef1a rapgef1a,LOC107598978,LOC107725290,LOC107757300,LOC107664972,LOC107674295 coding downstream 706551 5693932 ~ 5717191 (-)
LOC122350067 LOC107598986,LOC107725298 coding upstream 27717 6470699 ~ 6473683 (-)
slc2a6 slc2a6,LOC107725299,LOC107599026 coding upstream 31774 6474756 ~ 6478894 (-)
dennd2da dennd2da,LOC107665000,LOC107720811,LOC107699011,LOC107557198 coding upstream 64875 6507857 ~ 6521964 (-)
spag17 spag17,LOC107598987,LOC107664984,LOC107664968 coding upstream 79971 6522953 ~ 6535787 (-)
zgc:194990 zgc:194990,LOC107699042,LOC107557196,LOC107758027 coding upstream 133343 6576325 ~ 6587081 (-)
LOC122350799 LOC107725298,LOC107598986 non-coding downstream 148532 6273884 ~ 6275210 (-)
LOC122350056 NA non-coding downstream 218284 6204023 ~ 6205458 (-)
G61554 LOC102215562 non-coding downstream 398904 6023995 ~ 6024838 (-)
G61550 endog non-coding downstream 456620 5845963 ~ 5967122 (-)
G61538 NA non-coding downstream 683304 5740075 ~ 5740438 (-)
G61582 NA non-coding upstream 24971 6467953 ~ 6468416 (-)
G61629 NA non-coding upstream 108422 6551404 ~ 6551711 (-)
G61640 NA non-coding upstream 118468 6561450 ~ 6561918 (-)
G61663 NA non-coding upstream 214516 6657498 ~ 6658284 (-)
G61782 NA non-coding upstream 419046 6862028 ~ 6862954 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 462636 5919961 ~ 5961106 (-)
G61513 NA other downstream 806078 5614329 ~ 5617664 (-)
c8h9orf116 LOC107757294 other downstream 814170 5605172 ~ 5609572 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other downstream 912799 5476213 ~ 5510943 (-)
nr1h5 nr1h5,LOC107653410,LOC107598964,LOC107725330,LOC107674374,LOC107734534,LOC107570978 other downstream 1072463 5341394 ~ 5351279 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other upstream 371489 6814471 ~ 6816747 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other upstream 432367 6875349 ~ 7056429 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other upstream 648468 7091450 ~ 7102993 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 1234514 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 1674026 8117008 ~ 8232774 (-)

Expression


Co-expression Network