LOC122350139 (elavl4)


Basic Information

Item Value
gene id LOC122350139
gene name elavl4
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8117008 ~ 8232774 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU91781
CTAGAAGACTGATGAGACTGGGCTCTTCCTCTCATCCTGGGATAGGATATGCTTAATGTAATAACCTACTGGATGTTTCCGTGCCTCTCTGCCAATCTCAACTTTTGTGGAGGCGATTATTCTAACGACAGTGGATCcggatttaaaaaagaaagaaaaaatcctGAATCGACACCAAGAGAGTTCGATCTAAAGAAGGACATTTTCTTCTTCAAAATAAGGGCGGTCTGGTTTTGCTACtgtttacagagaaaaaaaaaagaaaaaagtaaaagacaaCCACGAGAACTCAAGAAGATATACAACAGAATCCCTGTACCACTTCCAGGGTCTCCAAATAATGAATATTCTcaatttgtcattttgtaataCTTAGGCAACATTGGCTTATAGGTCCAAAGTTATATTATAAGCCATATCCAGTTCTTTTTTGTGGGTTTGTTGGTTGGGTGTGTTCCTGTTTTGAGTAGCTGAGTGGGCAGAGGTGGGTTTTTAGTATTAGAGGAGCTGTAAGGAGCTACACAAGTGATGGGAGGGGAGTTCAGGACTTGTGGGTCTTGTTGGTCTTGAAAGACACTTGCAAGACACGGTCACCCAACCGATACCCATTCAGACTGGCGATGGCCATGGCCGCTTCGTCGTAGTTCGTCATGGTGACGAAGCCGAACCCCTTGCACTTGTTGGTGTTGAAGTCGCGGATCACCTTGACGTTGTTGACGGCGCCGAACGGTCCAAAGAGCTGCCACAGGACGCTCTCGTCCGAGTCCGGTGACAGGTTGTAGACGAAGATGCACCAGCCCGTTCCTGTGTGACCGGGGATATTCATCCCTACTAGACTGGTCATGCTATCGATGGTGATGGGGGAGAACCTGTaggacgagagagagagtgaggaagATGCGTAAGTCAAACTGCCATTAGTTACAACTTCTAGTTGACTCTTCAAGGGTTACACTAGCAATTTCAGTTCCACAGTCTTTTCAGCCTGTCTAAATATCTGCTCCTTGTTTTTCAGGCGGAAGGCAACcggatagtttttttttttttgaatgccgAGTGAAAAGGCTGCGCCCCGGTGCCGGCTGCGGGGTGCCGCGCCGAAGCGACGGGTGCCGAGACGCAGGATCTATTGGGGAACTAAATTACAGGAACTCTGCACATTAATACCTTCGAAATTCATCAGAGATTTCGCATGCAACCGAGTAAATCTGCTCTCATTCTCCTTGTAATCTTTCCATTCttgccttttttttcctccctcatGATACAGAGATTTGAATGCTCAGTTGATTTCACTTAATTGCCTTTCCGCTTAAAGGAAATTTccactttaaataaaaggtaaattGGATAAAAGGTTCATTTCGTGTGCCACCTCTCAAGGAATGACTATAGGCATTATTGGGGTGTGCTTTAATTGAGATTTCCGCTTTGCTGCCGTCGTCGTCTTCGAATCCGAAAGGTTTGGGGAGGGGGATAGGAAGCTGCCAGCGAGCAGAAAATGGAAGCGGCGCTTTCCAGCCAGCTAGCACGGGGAACAGAGTGTATTCCACCCACACCCTCTGCCGCTCCGCAGTGTGTGACTGTGATCGATAGCACTGCACGGACTACAGGGCCGGCCAATTCCCTGCTTCTTGTTCTGCCAAGAATTACTCAGACGTTTCATCTGCGTTTTAGCCCGTTCGTCCTGGCAGAGTCAAtacatctgtctctctctttcgcttTTGTGTCCTGTCGCTTGCGTCTCATTATGTAAATGAAGGGTATAATGGTAAGTCGGCTCACTTTGCGCCTTGTGACAAGCAACCATCTCATGACTTCAATTATGCTGGTATTTCTGTGTAAATAATGAATCCGTAGCCATTATTCATCGAATATGGCTTCGTGGTAATTTGGATGCCAGTCATCTGCGGGCGAGCGGGTGAGGGTCGGACTAGCGGATTGCTGACACAGAGGTGTCTGGTGACTACTAGGGCAGGGCCGAGCGCTGTCTGTTGTTCGAACTAAGGCGAACAGTTGGACGAGGAGTTGCATAGCAACAAGCGACTGACCTAGAGCCATCCCACCCTTCCGAGCTGCCCACCTTCACCTAGCGATGCTCACTTCTTCAGACTGGTCTTTGTTCATTAATTACCTTCCACGGCGTGCTCTGTGAGCAGAACTCCTCCCCAGCCCCCCGTTGGTTTCATCTCCCCTAAATTTTTCCTCTCTTGGGGCAGACGGCTTATTTGACAGCTGATCGCAGCGagtgtaaataaaaaggaaTCTTTCGTCTCgtcatttgttttgaaagacGTCGCTGCCTCGTTTGCATATCCCGTTTCATTGTTGCACTTCCCGTTACTTGTCAgattgtacaaaaaataaacatgttttctttcgAAAAACAATAGTTAGATTCTGATCAGCCAGTGCCAAAATGCAAAGGACTTTTCTAGAAAGAGAAGAAATCTAGTAAATGCGGAGCCTTTACTCTTAACAGAGaggtatctttaaaaaaaagaaagaaaaagaaacgtgCACAATGCACAACCTTTCATGCTACTCCCTCCATCTTAGCCTTGAGTGTTCGAGGGACATCAAAGTGTTTCAATAGATACTAAAATATGCAACAAAATGTCATAAGCACTAAAACATGTTCAAAAGAAGCCTTTTCACTACATCCACAGCAGCACAAAGCAAAAGAACATGAGCAAACCCAACTGATCAGAGGCTCCTAAACCTGCAGTGAAACACTACATTTCCTGCAGGGATCCAGGTGAGCTGTCACCCCCTCCGTCTCGCTCTAGACCAGCTCTTTCCAAcaaataaaatggaaacaaGTAGACGAAAAAACACAATAGCCTTCCATCGATTTTAGCTGTTATATGTAACGCATTGGGAATATACATAATTTCGTTCAATTGTTGGCAGCGTGTAACCCTGAGCTGGACGGAGGTACGGCTTCAGCCCCTGAATCCTGTGGAGGCCACGCTTCAAAACAGGAGctacacaataataaaacacaaaataccaAAACGGAACTCATAAAAAATTTTGAATCATCATAAACACTACAAATTATAAAAGATACTTACACTTTTAGGGCTACAGATTGGAaggttgaaataaaaaataatcaagtCAACAAAAAGGCAAACGAACTGAAGAGAAGGGAAAAAAccttgaactgaactgaatgcATGTGATTTTcaaaaagaagggaaaaaaaaaatcatactgtcAAACATGGACATCTGGCATTCGGTGAAGTTTTAATTACCTCTTAACGCCATAGGCCATATTAAGCAAATTGTCCAGCCTGTAAAGAGAAGGAGGGTTCTGGGGTTAATGCCAGGCAGATGGTTGACTCACTCAGTGGAACTAATGCTACATCCCTGCCTCACTGAAGGAAGACGCCCATCTAGCGATGGGCCATTACACTGTGCTGCCCCATCAGGCATCTCACAGAGTCAATCATACATCCAAAGAACAGCAGACTTGCAGCAGCACTAATGGTAACAGGAGGCCACTTGAATGCCTACCCAGTTATTTAGCCTAACAGTGCTGCAATCCTAAAATATTATTCACTACATAATTTATGtgacatatatacaaataaaattgcaatagtTTCACTCAAACAGTGTGTGGGGGggttataattaaattaagaatgATTTATAATGCag
>TU91784
CTAGAAGACTGATGAGACTGGGCTCTTCCTCTCATCCTGGGATAGGATATGCTTAATGTAATAACCTACTGGATGTTTCCGTGCCTCTCTGCCAATCTCAACTTTTGTGTGAGTAATAACGTTGGCATTCACGCTCGTTGGGATAGCTGATCAAATTCTTATCAAAAAGGTGCAGCTCAAGTGACATTCTGTGCCTCCGGGGTCTTGAGAAAATGAAAGTTCCCaggaatattttaaagattaccGGGTATTAGTTAAATCACCTTGCGTTACGCGAGGAGCAAGCCTCTTTTTCTCGAACACAACATGGCAGCACACAGCTTTCAACACCTTATTTTATTGTCCCAACAttcaaaagtacaaataattcaaacacaacagttttatgaaaaagaaaaaaacatttacagcaagtatttttttccatattttgttTCCAGTTTCAGAAATGACCTAAACTAGCAAGGATAACATGAAGTCATTCATCGCAGTAATTTGATTCGTAATAAGAATAAGGATAATGagaataatattaatcataGTAACAATAATCAATAATCGATAGATAAGTAATAACGTAAGTAGGAGAGACCAGCTTGGTCCggtgaacttttttttctttttttttcatctttttttgtctttaaagatttatagatttttcagatagtaaacaaacacatttcaggAGAAAATGAATTATGACAAGAGCCTTGTTCCTCACTTTGCCTTCCCTCCTACACTACTGGCTGATGGGTTCCTATTGGCAGGCTGCCACTATAAGGCGCTACAGGGGGAGAGACACTGCGATACGGGCACGCACTATAGAGGCACGGCCCCACGTTTCCAACACCCCCGCAAACTAGACGCTCTCCCGTGCAGTCATCCACGCTCAGACACGCGGAGGGTGATGCCATTAACCAAAAGAGGAGGACGTAATGCAGGAAATTTGTTCGTACATCAGAACAACATTCTACTGGGGTCGTTGCATAATTCAAACTCCCAGCCGCAGCGGGGTTTGAGAAGGGCCGTGCCGCCGCCGCCACCGCCCCCTTAGAGACGGAGCAGAGGAGGATGGATGGCATTAGAGGTGGAGGAATGTAAGACTGCTCATGAACGTGACTTTTGTTTTTCGTTCTCCAGCATTCACACCGGCCTTAGCAAGAGCCGAGCTCTCCATTCAGGAAGTTTACCTCTCAAAATAGACTATATCttagaaaatatataacagGTGTCATCTATCAAATATTATCTGCTATAGCTATTTTTGTTCAACCAGTACAATCAGagtcaatgcttttttttttttttttttttttttttttttattttttttttttttttt
>XR_006251572.1
AAGGGAATCAATAAGGAGTCCGATCATGGAAACGGAACATTCACTGGAGTAGCCTCGACTGGAGATTTTTCTAGAAGACTGATGAGACTGGGCTCTTCCTCTCATCCTGGGATAGGATATGCTTAATGTAATAACCTACTGGATGTTTCCGTGCCTCTCTGCCAATCTCAACTTTTGTGTGAGTAATAACGTTGGCATTCACGCTCGTTGGGATAGCTGATCAAATTCTTATCAAAAAGGTGCAGCTCAAGTGAC

Function

symbol description
elavl4 Predicted to enable RNA binding activity. Acts upstream of or within axonogenesis. Part of protein-containing complex. Is expressed in nervous system and trigeminal placode. Orthologous to human ELAVL4 (ELAV like RNA binding protein 4).

NR:

description
PREDICTED: ELAV-like protein 4 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91781 True 3671 lncRNA 0.44 3 8210043 8217417
TU91784 False 1345 TUCP 0.40 3 8117008 8217417
XR_006251572.1 False 255 lncRNA 0.44 3 8217019 8232774

Neighbor

gene id symbol gene type direction distance location
bend5 bend5,LOC107707580,LOC107757978,LOC107700377,LOC106584333 coding downstream 353799 7750415 ~ 7763209 (-)
LOC122350881 agbl4,LOC107657883,LOC107603279 coding downstream 376552 7688861 ~ 7740456 (-)
LOC122350867 bcar3,LOC107707585,LOC107599011,LOC107657879,LOC107699431,LOC107603218,LOC107757998 coding downstream 464702 7594983 ~ 7652306 (-)
LOC122350884 NA coding downstream 734196 7380546 ~ 7382812 (-)
LOC122350680 LOC107599044,LOC107700337,LOC107757981 coding downstream 739251 7375035 ~ 7377757 (-)
dmrta2 dmrta2,LOC107657863,LOC107707574,LOC107699532,LOC107743899,LOC106613895 coding upstream 39710 8272484 ~ 8275399 (-)
faf1 faf1,LOC107743872,LOC107707577 coding upstream 52457 8285231 ~ 8346021 (-)
rnf11b rnf11b,rnf11,LOC107599796 coding upstream 124073 8356847 ~ 8371737 (-)
ttc39a ttc39a,LOC107657886,LOC107752432,LOC107599797,LOC107743871,LOC107548186,LOC107699571 coding upstream 139883 8372657 ~ 8391494 (-)
calr calr,LOC107548191,LOC107743868,LOC107699587,LOC107657889,LOC107752434,LOC108265943 coding upstream 184656 8417430 ~ 8422195 (-)
G61967 NA non-coding downstream 142988 7879417 ~ 7974020 (-)
LOC122350891 NA non-coding downstream 162366 7951561 ~ 7954642 (-)
G61965 NA non-coding downstream 338444 7749703 ~ 7778564 (-)
G61959 NA non-coding downstream 453749 7662217 ~ 7663259 (-)
G61868 abl2,LOC107599009,LOC107699422,LOC107657876,LOC107707589,LOC107603207 non-coding downstream 568685 7545810 ~ 7548323 (-)
LOC122351107 NA non-coding upstream 20764 8253538 ~ 8269217 (-)
G62076 NA non-coding upstream 194511 8427285 ~ 8430135 (-)
G62120 NA non-coding upstream 275117 8507891 ~ 8508123 (-)
LOC122350893 NA non-coding upstream 479263 8712037 ~ 8739953 (-)
G62239 NA non-coding upstream 680708 8913482 ~ 8914004 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 429446 7677496 ~ 7687562 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 1014015 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 1060579 6875349 ~ 7056429 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 1300261 6814471 ~ 6816747 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 1674026 6423742 ~ 6442982 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 159571 8392345 ~ 8416553 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 414496 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 419530 8652304 ~ 8657286 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 1024469 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 1467620 9700394 ~ 9708621 (-)

Expression


Co-expression Network