mrps36 (mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901)


Basic Information

Item Value
gene id mrps36
gene name mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8647270 ~ 8649983 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU92042
AGCAGAAATAAAGGGTTGGCCGTGACAGGCCACTATCAGCACAGTGTTTAGTGGGTTTCGGAGGTCAACATGGGAAAATAACGTTACAATACAATACTAGATAGCGTCTCGTTGGTTGTTAGCATTCAGTTGCGGTGTCGTCTGTGTCTGAACCGGAAGCAGTATTCGGATGTCGTCATGGGAAGCAAAGTGAGTGGCAAGATGGCAGCTGCCAGTCGGGTCGTGCAGGTTGTGCGACCTCATGCACCTTTAATTAAATTTCCAGATCGGAAGGCCGGCCCTAGGCCGAATGTACAAGAGGCACTAAAGGTGCTTGCAGCCAGTCTCCCACAGCTCTCCCCGTCCACACCTCCACCTACAGCGTCAATATCACCTCCACCCAGACCCCCGGGACCCGTCAGCCGACTGCCCGGCACTCCTGACAGCATTGATGTAGTTAAAGATCTCCCTCACAAATACCGCAGAAGAACCCTTGCGTTAGATGAAATGGACTACATCCAGcgTGGTGGGCCAGAGTGACCGTTGTCTGATCTAATCAGACTTTATGAAAATCAGTTGCCtgacgactttttttttttttttttttttttttcagtatgagGAGTTTATAATACGTTTTACAGCAAACCAAACtaattaaatcagtttaattGTACATACGTATTATTTAACCACTGTAAAGCCTGTGCTTGGTTTTCATCATTTCATCCTTTAGGTGCtctgtatttacattaaaatgcagaaCTCTTTGCTTTGTTAttcttcagtccatcagttatttaatgtttactgGCTACGCTAGCCAGCACCTCTACTGACCATCAGAGTTTATGAATTTCCTCCTCCATTGTATTATATGTTCTGGATTCAGAGAAAAGCACTTATCTGAGTGCCAGCATATTCTACAGgtctaaacaaaataaatcgTTATGGATCGTGAAActgaacaattaaaatatttaca
>TU92043
AGCAGAAATAAAGGGTTGGCCGTGACAGGCCACTATCAGCACAGTGTTTAGTGGGTTTCGGAGGTCAACATGGGAAAATAACGTTACAATACAATACTAGATAGCGTCTCGTTGGTAAGACTGTATGTTTATTGTGCTTATTATAATGCGCGGGTCTGTAGATTTGAAACGTAACGatagaccttttttttaaaggcagaaCCACTTGTGATTAATGTTAGCAGGACGAGCTATTGTACACTAAAGTAATTTTGCGTTTTGCTTGCAGTAATATATTATTGATGCATGATGTCAAAGTTAATTAGATAAATTcgcatgtatgtgtgcatgaatTGACAGCCTGTTTCATGTCCATTCCGTGTGATTCAGTAAAACGACCGCTTCTCTGCTCTACACTCTATACACACTTTATCAGTAAATGTAACGTTTGTTTCTAACTAAACAATGCAACAATTAAGCAATCATTGTCATTTATGATAGTCCTTGCATGCCCTCGTCCGGTTGCCAGATCTAAAAGCAGAAGCGACCAAAACGTTTTAGGTCGATTCTTTTCAGCAAATCAGTCGAGTCTGTTTGTAGAATCGGTCTGAAGGATTCGAGTTAATTGTTAAGTTTAAACGAACAGTTCGAAAGAACCGATCCGCGGCTTCGGAGTTATAATACAACCGCGCCCTCTTCAGGTTGTTAGCATTCAGTTGCGGTGTCGTCTGTGTCTGAACCGGAAGCAGTATTCGGATGTCGTCATGGGAAGCAAAGTGAGTGGCAAGATGGCAGCTGCCAGTCGGGTCGTGCAGGTTGTGCGACCTCATGCACCTTTAATTAAATTTCCAGATCGGAAGGCCGGCCCTAGGCCGAATGTACAAGAGGCACTAAAGGTGCTTGCAGCCAGTCTCCCACAGCTCTCCCCGTCCACACCTCCACCTACAGCGTCAATATCACCTCCACCCAGACCCCCGGGACCCGTCAGCCGACTGCCCGGCACTCCTGACAGCATTGATGTAGTTAAAGATCTCCCTCACAAATACCGCAGAAGAACCCTTGCGTTAGATGAAATGGACTACATCCAGcgTGGTGGGCCAGAGTGACCGTTGTCTGATCTAATCAGACTTTATGAAAATCAGTTGCCtgacgactttttttttttttttttttttttttcagtatgagGAGTTTATAATACGTTTTACAGCAAACCAAACtaattaaatcagtttaattGTACATACGTATTATTTAACCACTGTAAAGCCTGTGCTTGGTTTTCATCATTTCATCCTTTAGGTGCtctgtatttacattaaaatgcagaaCTCTTTGCTTTGTTAttcttcagtccatcagttatttaatgtttactgGCTACGCTAGCCAGCACCTCTACTGACCATCAGAGTTTATGAATTTCCTCCTCCATTGTATTATATGTTCTGGATTCAGAGAAAAGCACTTATCTGAGTGCCAGCATATTCTACAGgtctaaacaaaataaatcgTTATGGATCGTGAAActgaacaattaaaatatttaca
>XM_043246677.1
TGCATCAACCTAAGCATGAGCAGAAATAAAGGGTTGGCCGTGACAGGCCACTATCAGCACAGTGTTTAGTGGGTTTCGGAGGTCAACATGGGAAAATAACGTTACAATACAATACTAGATAGCGTCTCGTTGGTTGTTAGCATTCAGTTGCGGTGTCGTCTGTGTCTGAACCGGAAGCAGTATTCGGATGTCGTCATGGGAAGCAAAGTGAGTGGCAAGATGGCAGCTGCCAGTCGGGTCGTGCAGGTTGTGCGACCTCATGCACCTTTAATTAAATTTCCAGATCGGAAGGCCGGCCCTAGGCCGAATGTACAAGAGGCACTAAAGGTGCTTGCAGCCAGTCTCCCACAGCTCTCCCCGTCCACACCTCCACCTACAGCGTCAATATCACCTCCACCCAGACCCCCGGGACCCGTCAGCCGACTGCCCGGCACTCCTGACAGCATTGATGTAGTTAAAGATCTCCCTCACAAATACCGCAGAAGAACCCTTGCGTTAGATGAAATGGACTACATCCAGcgTGGTGGGCCAGAGTGACCGTTGTCTGATCTAATCAGACTTTATGAAAATCAGTTGCCtgacgactttttttttttttttttttttttttcagtatgagGAGTTTATAATACGTTTTACAGCAAACCAAACtaattaaatcagtttaattGTACATACGTATTATTTAACCACTGTAAAGCCTGTGCTTGGTTTTCATCATTTCATCCTTTAGGTGCtctgtatttacattaaaatgcagaaCTCTTTGCTTTGTTAttcttcagtccatcagttatttaatgtttactgGCTACGCTAGCCAGCACCTCTACTGACCATCAGAGTTTATGAATTTCCTCCTCCATTGTATTATATGTTCTGGATTCAGAGAAAAGCACTTATCTGAGTGCCAGCATATTCTACAGgtctaaacaaaataaatcgTTATGGATCGTGAAActgaacaattaaaatatttacaaatttttgaaa

Function

symbol description
mrps36 Predicted to be involved in 2-oxoglutarate metabolic process. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial oxoglutarate dehydrogenase complex. Orthologous to human MRPS36 (mitochondrial ribosomal protein S36).

NR:

description
28S ribosomal protein S36, mitochondrial-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92042 False 964 TUCP 0.43 5 8647281 8649965
TU92043 True 1530 TUCP 0.42 4 8647281 8649965
XM_043246677.1 False 993 mRNA 0.43 5 8647270 8649983

Neighbor

gene id symbol gene type direction distance location
rab3c rab3c,LOC107599832,LOC107700568,LOC107743864 coding downstream 41104 8600995 ~ 8606166 (-)
ndufaf2 ndufaf2,LOC107752447,LOC107743894,LOC107657848 coding downstream 166539 8478681 ~ 8480731 (-)
depdc1a depdc1a,LOC107657894,LOC107752443,LOC107599802,LOC107548279,LOC107699654,LOC107716419 coding downstream 170723 8469042 ~ 8476547 (-)
LOC122351041 rpe65,rpe65c,LOC107657893,LOC107752442,LOC107700531 coding downstream 180057 8463209 ~ 8467213 (-)
osbpl9 osbpl9,LOC107699596,LOC107657891 coding downstream 190036 8431193 ~ 8457234 (-)
skia ski,skia,LOC107548407,LOC107699765,LOC107657901,LOC107599811,LOC107710903 coding upstream 96904 8746887 ~ 8808599 (-)
prkcz prkcz,LOC107710919,LOC107743854,LOC107548418 coding upstream 170373 8820356 ~ 8911987 (-)
st6galnac5b st6galnac5b,LOC107599835,LOC107657873,LOC107710911,LOC107743856,LOC107550326,LOC107700626 coding upstream 272710 8922693 ~ 8934751 (-)
LOC122350776 LOC107599836,LOC107657909,LOC107710921,LOC107743853,LOC107548462 coding upstream 322810 8972793 ~ 8975940 (-)
tnni3k tnni3k,LOC107743849,LOC107550356,LOC107699804,LOC107657874,LOC107710912 coding upstream 341360 8991343 ~ 9001962 (-)
G62120 NA non-coding downstream 139147 8507891 ~ 8508123 (-)
G62076 NA non-coding downstream 217135 8427285 ~ 8430135 (-)
LOC122351107 NA non-coding downstream 378053 8253538 ~ 8269217 (-)
G61967 NA non-coding downstream 673250 7879417 ~ 7974020 (-)
LOC122350891 NA non-coding downstream 692628 7951561 ~ 7954642 (-)
LOC122350893 NA non-coding upstream 62054 8712037 ~ 8739953 (-)
G62239 NA non-coding upstream 263499 8913482 ~ 8914004 (-)
G62235 NA non-coding upstream 268775 8918758 ~ 8920904 (-)
G62241 NA non-coding upstream 271498 8921481 ~ 8921696 (-)
LOC122351086 NA non-coding upstream 286095 8936078 ~ 8942255 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 230717 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 414496 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 959708 7677496 ~ 7687562 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 1544277 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 1590841 6875349 ~ 7056429 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 2321 8652304 ~ 8657286 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 607260 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 1050411 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 1304698 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 1345564 9995547 ~ 10041769 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036330 mrps36 coding NC_007119.7 CM002892.2 17163494 ~ 17167830 (-)
grasscarp (Ctenopharyngodon idella) CI01000010_04377762_04378990 MRPS36 coding CI01000010 null 4377147 ~ 4379082 (+)
striped catfish (Pangasianodon hypophthalmus) mrps36 LOC108265361 misc NC_047602.1 CM018548.1 7424001 ~ 7430997 (+)