LOC122350893


Basic Information

Item Value
gene id LOC122350893
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8712037 ~ 8739953 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU92069
TCGACTTGAGTTGACAAATCACGGAAGTAGTCGTGTCTGGCTCAAAATTAGCCGAAAACCGGGGTTAAGCAGCAGAACGCGGAGTTGCAAACCGACGGCACGGAAATATGCATTAGCCATGAGATCTGCAGCTGTGGGAGCCGTAAACAGATCAGGTCACTTGGTTGCCTCGTAGCTGTCAATCATTCAGAAGaGTGGGAGGGAGAAAAATGGAGCGAGAAAGGACACCAGTGCATCCTGTTTCTGGAATGAGAATGTAAACAGTTTCACCCTTCCAGACCATGTTATGTCTGCTCTACATCTGGCCAGTGCTGCTTTCATAACTTACCGTAATTGTTAACGCTAAAGGCTAACAATGTTCATCCCACAACTCCAAAGGACAAGACCGCCGATCAGTCAAACCACTGCACATCCTCTATCAATCTCATGTAATTTACACAGGCTTCTCTTTTAACCTAAATATTCCAACCTACACCTTTGcctatgttatatatattatatgcatctATTTGCATATCAGCATGGCAGACAGCTACCTGCCTTCCcctaaaaattataatttactgCTGTGAtagaaaagacattttgaatagTATGTGACCGTGAAC
>TU92070
GAGAGACTGGAGCCCAATGAAGAGCTCTAGAGCTCAAGTGCGGCTCTCAGGCATCTGGGGCTCCTGCTGAACACGGACGTCACCGTGGATTAATGTAACTGGAGCTATGGGAAGACACTGGATGATGGAACGGAAAGCAAGGGacaggcagaaagagagagggagaagggGAAAGTGAAGCGAAAGTGAAGAGAAAAGTGTGGAAAGAGAGCATTGGGGATTGAGaGTGGGAGGGAGAAAAATGGAGCGAGAAAGGACACCAGTGCATCCTGTTTCTGGAATGAGAATGTAAACAGTTTCACCCTTCCAGACCATGTTATGTCTGCTCTACATCTGGCCAGTGCTGCTTTCATAACTTACCGTAATTGTTAACGCTAAAGGCTAACAATGTTCATCCCACAACTCCAAAGGACAAGACCGCCGATCAGTCAAACCACTGCACATCCTCTATCAATCTCATGTAATTTACACAGGCTTCTCTTTTAACCTAAATATTCCAACCTACACCTTTGcctatgttatatatattatatgcatctATTTGCATATCAGCATGGCAGACAGCTACCTGCCTTCCcctaaaaattataatttactgCTGTGAtagaaaagacattttgaatagTATGTGACCGTGAAC
>XR_006251637.1
GGAAGTAGTCGTGTCTGGCTCAAAATTAGCCGAAAACCGGGGTTAAGCAGCAGAACGCGGAGTTGCAAACCGACGGCACGGAAATATGCATTAGCCATGAGATCTGCAGCTGTGGGAGCCGTAAACAGATCAGGTCACTTGGTTGCCTCGTAGCTGTCAATCATTCAGAAGaGTGGGAGGGAGAAAAATGGAGCGAGAAAGGACACCAGTGCATCCTGTTTCTGGAATGAGAATGTAAACAGTTTCACCCTTCCAGACCATGTTATGTCTGCTCTACATCTGGCCAGTGCTGCTTTCATAACTTACCGTAATTGTTAACGCTAAAGGCTAACAATGTTCATCCCACAACTCCAAAGGACAAGACCGCCGATCAGTCAAACCACTGCACATCCTCTATCAATCTCATGTAATTTACACAGGCTTCTCTTTTAACCTAAATATTCCAACCTACACCTTTGcctatgttatatatattatatgcatctATTTGCATATCAGCATGGCAGACAGCTACCTGCCTTCCcctaaaaattataatttactgCTGTGAtagaaaagacattttgaatagTATGTGACCGTGAACCACAAATGTTGTAAGGGTaaatttttttgatgaaataaacTTTCCATTACACATGTAGGATGGGACAAtctttggctgagatacaactatttgaaaacctGAGGgtggaaaaatattaaaatatttagaaaattgcTATagttaaaacattcaaaatgttttcgcaatgcatattactaatcaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92069 False 608 lncRNA 0.43 3 8712223 8739953
TU92070 False 640 lncRNA 0.45 2 8712223 8713432
XR_006251637.1 True 772 lncRNA 0.40 3 8712037 8739931

Neighbor

gene id symbol gene type direction distance location
rab3c rab3c,LOC107599832,LOC107700568,LOC107743864 coding downstream 105871 8600995 ~ 8606166 (-)
ndufaf2 ndufaf2,LOC107752447,LOC107743894,LOC107657848 coding downstream 231306 8478681 ~ 8480731 (-)
depdc1a depdc1a,LOC107657894,LOC107752443,LOC107599802,LOC107548279,LOC107699654,LOC107716419 coding downstream 235490 8469042 ~ 8476547 (-)
LOC122351041 rpe65,rpe65c,LOC107657893,LOC107752442,LOC107700531 coding downstream 244824 8463209 ~ 8467213 (-)
osbpl9 osbpl9,LOC107699596,LOC107657891 coding downstream 254803 8431193 ~ 8457234 (-)
skia ski,skia,LOC107548407,LOC107699765,LOC107657901,LOC107599811,LOC107710903 coding upstream 6934 8746887 ~ 8808599 (-)
prkcz prkcz,LOC107710919,LOC107743854,LOC107548418 coding upstream 80403 8820356 ~ 8911987 (-)
st6galnac5b st6galnac5b,LOC107599835,LOC107657873,LOC107710911,LOC107743856,LOC107550326,LOC107700626 coding upstream 182740 8922693 ~ 8934751 (-)
LOC122350776 LOC107599836,LOC107657909,LOC107710921,LOC107743853,LOC107548462 coding upstream 232840 8972793 ~ 8975940 (-)
tnni3k tnni3k,LOC107743849,LOC107550356,LOC107699804,LOC107657874,LOC107710912 coding upstream 251390 8991343 ~ 9001962 (-)
G62120 NA non-coding downstream 203914 8507891 ~ 8508123 (-)
G62076 NA non-coding downstream 281902 8427285 ~ 8430135 (-)
LOC122351107 NA non-coding downstream 442820 8253538 ~ 8269217 (-)
G61967 NA non-coding downstream 738017 7879417 ~ 7974020 (-)
LOC122350891 NA non-coding downstream 757395 7951561 ~ 7954642 (-)
G62239 NA non-coding upstream 173529 8913482 ~ 8914004 (-)
G62235 NA non-coding upstream 178805 8918758 ~ 8920904 (-)
G62241 NA non-coding upstream 181528 8921481 ~ 8921696 (-)
LOC122351086 NA non-coding upstream 196125 8936078 ~ 8942255 (-)
G62255 NA non-coding upstream 228336 8968289 ~ 8972773 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 54751 8652304 ~ 8657286 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 62054 8647270 ~ 8649983 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 295484 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 479263 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 1024475 7677496 ~ 7687562 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 517290 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 960441 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 1214728 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 1255594 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 1505243 10245196 ~ 10248156 (-)

Expression


Co-expression Network