G62235


Basic Information

Item Value
gene id G62235
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8918758 ~ 8920904 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU92177
TTTGTAGACGAGCATATCTACGGCCACGTATTCCTCAGCCTAACTTAAAATCAACCACAACGTCTGTTTTATCTGCTTATTTGTTATGTTAACGTATCGCCAATTTTAAGCGAGTCCGAGCATTGCGAACGAGGTTAGTGTGCCATTCACAACCGCAAACGAGCCTCTCTGTATAGAAATAAAGTCACGAGTTAACCGAATGAGTCTATATGTTGGGAGATACTATATACGGACtatgaataaaaaagtattttgtttttagatatGTGATTTGAAGATAACATTGTATCGATTCGTTTAGTAAAGTTTTTgctaaaattttttaaaattccacagACCTCAATTATGGCTAATATCGAGGCCGTTAAATggtattttacatattaatgcaaatataaatgaagATTATACAAATCTCCTTGTGAGGACAATGCATAGCAATTAGTTGCCACTGTTGATGAAGCAACACCGCGTACTATTCCACAAATTTCATTTTcgatttcacagaaaaataagtATTTCGTAGGGAAAGCCAGACGCCGTCGTTGAGTGTAAGTTCTGACAATGTTGAGCAGTAAATCCAACGAGGAGCTCAGGTTGATGCTGGATGATTATGGGATAAAACACGGTCCTGTGGTCGATTCCACCAGAGCCCTTTACGAGAAAAAGTTAAGAGATGCCATGACTAAACCCAGAAGAACTAAAGCTCAATCCGACAGGACATTTTACAGGGAGGAGGGTAATTCAACACAACACACGATCATCTAGATGTCATGTCATATTACAGCAATGATTTGAATTGATCGCACTTTTGCCTTCCAGAACAAGACACCTACGTTCAGCATCGCAGACCTCAACGATACAACGACGTGACCGACAGaacGTGGTCAGATTATAGAGCGATGGACTACATAGACGAgcctgCCACATACAGGACTCAAGCTCCTTACCGTAATGTGTCACAAACAAGAAACCTGCCAACAGAATCTGAAATCCAGGAAACACCGGAGAAAAGTTCAACACGCCTAGTCCCAGTCTGGCTACAGTTTTTAGTATTTCTGATCATATCTGGTTTTCTGTACttggtttttacaaatatgGAATCGGCAGAGCCTGTCAAAAGACTGGTGTAACCCTTCCTTTAGCGATTAAACCGattattacatttagaaaacaaGCGTATGTCCAGCACAATAGATGTGATTTTTGACATATTGTAGCGGTTTGACTCCTTAAATGTGGCGTGtgatgttttataaaagcaatggCCTGACACTGTACTCTTTTGTGAAAATGAAGGAAGTGGTTGCTACAGGATGCACctgttaaaaacataattttttttatgatgcattttgTTCCTTGGTGAGGACGACTGTCCGTCGTAATGCTgcagtacattttacagtattgtatttttagtcatttcttgGACATTTCTCATACGTTTATCACCACTTGTCTGCTAACAGAAAACGTCAAAGCTATTTTGTACATATTTCGAAGTATAAAGTTGCTGAATTTAGTGTTCGTTACTTTACAACAGGTCAAAGCTACGTATGAGGTTTTTTCTGgtgttttgtgatttaaaaact

Function

GO:

id name namespace
GO:0043254 regulation of protein-containing complex assembly biological_process
GO:0044087 regulation of cellular component biogenesis biological_process
GO:0008154 actin polymerization or depolymerization biological_process
GO:1902903 regulation of supramolecular fiber organization biological_process
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0032970 regulation of actin filament-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0030832 regulation of actin filament length biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0030029 actin filament-based process biological_process
GO:0033043 regulation of organelle organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0030041 actin filament polymerization biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:0008064 regulation of actin polymerization or depolymerization biological_process
GO:0032535 regulation of cellular component size biological_process
GO:0032271 regulation of protein polymerization biological_process
GO:0044451 obsolete nucleoplasm part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92177 True 1595 lncRNA 0.39 5 8918758 8920904

Neighbor

gene id symbol gene type direction distance location
prkcz prkcz,LOC107710919,LOC107743854,LOC107548418 coding downstream 6771 8820356 ~ 8911987 (-)
skia ski,skia,LOC107548407,LOC107699765,LOC107657901,LOC107599811,LOC107710903 coding downstream 110159 8746887 ~ 8808599 (-)
rab3c rab3c,LOC107599832,LOC107700568,LOC107743864 coding downstream 312592 8600995 ~ 8606166 (-)
ndufaf2 ndufaf2,LOC107752447,LOC107743894,LOC107657848 coding downstream 438027 8478681 ~ 8480731 (-)
depdc1a depdc1a,LOC107657894,LOC107752443,LOC107599802,LOC107548279,LOC107699654,LOC107716419 coding downstream 442211 8469042 ~ 8476547 (-)
st6galnac5b st6galnac5b,LOC107599835,LOC107657873,LOC107710911,LOC107743856,LOC107550326,LOC107700626 coding upstream 1789 8922693 ~ 8934751 (-)
LOC122350776 LOC107599836,LOC107657909,LOC107710921,LOC107743853,LOC107548462 coding upstream 51889 8972793 ~ 8975940 (-)
tnni3k tnni3k,LOC107743849,LOC107550356,LOC107699804,LOC107657874,LOC107710912 coding upstream 70439 8991343 ~ 9001962 (-)
fpgt fpgt,LOC107699845,LOC107585822,LOC107548491 coding upstream 81317 9002221 ~ 9006003 (-)
acot11b LOC107710923,LOC107585821,LOC107657911,LOC107548485,LOC107743846 coding upstream 88822 9009726 ~ 9018000 (-)
G62239 NA non-coding downstream 4754 8913482 ~ 8914004 (-)
LOC122350893 NA non-coding downstream 178805 8712037 ~ 8739953 (-)
G62120 NA non-coding downstream 410635 8507891 ~ 8508123 (-)
G62076 NA non-coding downstream 488623 8427285 ~ 8430135 (-)
LOC122351107 NA non-coding downstream 649541 8253538 ~ 8269217 (-)
G62241 NA non-coding upstream 577 8921481 ~ 8921696 (-)
LOC122351086 NA non-coding upstream 15174 8936078 ~ 8942255 (-)
G62255 NA non-coding upstream 47385 8968289 ~ 8972773 (-)
G62262 NA non-coding upstream 85651 9006555 ~ 9006779 (-)
G62263 lrriq3,LOC107657910,LOC107585823,LOC107699824,LOC107548466 non-coding upstream 85930 9006834 ~ 9007105 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 261472 8652304 ~ 8657286 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 268775 8647270 ~ 8649983 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 502205 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 685984 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 1231196 7677496 ~ 7687562 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 336339 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 779490 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 1033777 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 1074643 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 1324292 10245196 ~ 10248156 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036337 si:ch211-150o23.2 coding NC_007119.7 CM002892.2 17787308 ~ 17790965 (-)
grasscarp (Ctenopharyngodon idella) CI01000010_04025764_04026729 NA coding CI01000010 null 4025361 ~ 4027266 (+)