fam78bb (fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225)


Basic Information

Item Value
gene id fam78bb
gene name fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9700394 ~ 9708621 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU92617
gtttaatctcagaaaatgttcattatCAAGCAGCAGGCTGAATGGTGTGAAAGGATTGAATGTAATTAGCCCGAAAGTCTGGCAGGAGCCGTGGACTCCAGGCATCTGCGATGTAGCTGAGCATTGAATAGTGATGAGAGATGGAGCTTCAGCATCTCCAACCTTTTATTACATCGAAAAAGACAGAGTGAGAGGGAGAAAAGGGAAGACAACGTATAACGTACACATCTAGGCCTACATTTAGCCGACGCTCACAAACAGGGCCTGcatcgacacacacacacacacacacacacacacgctactcCTCTTTTAtctttatgacattttattaaagcagaAAGGTCAGATACAAACAGGTTTCTGATGAGTTCTTCACTTTCTGTGCTCCTCCCACAATTCATCcagtaccacacacacac
>XM_043247557.1
ATATTTTTGGGGGTGGGGGGActgaaaatagtttaaaatcaaatacagTGATTAAATATGACTGTTCTTCATCAAAAAATAGACAGTCAGATCCACGGATAaaattcagtggaaaaaaagcGGGCAAGTGACGCAAGTAAGGCCTGagatgagagacagagacgaCCGCAAAGACACAAGGACCTTCTGTCTTACTCCAGATTTATCTTTCAACAGACATTTGTCCTTGTCTTTACTCTGCTCACAGCccgaaaaaaaaaccctggtcCGAAACTTTGGTTAGATTCcaagaaaatgtaactttccAGTTATGTTCTTTTGTTAGTAAAAAgtacagatgcttttatttgattaaaccCCCCAAAAATAGGTCCAAATGTAATAACATGTAAAATCAAGCGTCAGTGTCATATGTtaaattttttcagtttaatctcagaaaatgttcattatCAAGCAGCAGGCTGAATGGTGTGAAAGGATTGAATGTAATTAGCCCGAAAGTCTGGCAGGAGCCGTGGACTCCAGGCATCTGCGATGTAGCTGAGCATTGAATAGTGATGAGAGATGGAGCTTCAGCATCTCCAACCTTTTATTACATCGAAAAAGACAGAGTGAGAGGGAGAAAAGGGAAGACAACGTATAACGTACACATCTAGGCCTACATTTAGCCGACGCTCACAAACAGGGCCTGcatcgacacacacacacacacacacacacacacgctactcCTCTTTTAtctttatgacattttattaaagcagaAAGGTCAGATACAAACAGGTTTCTGATGAGTTCTTCACTTTCTGTGCTCCTCCCACAATTCATCcagtaccacacacacacacacacacacacacacacacacacacactcttttcgTGTCACCCTAAAAGACACCAAGCAAGTGAACATTCTATTCATAGCATTAAATACTCAGATGTTTTAGGGATTTTCCTGTTCTACTCCACAGCCCCAGTTTCCTCTAGATAACATGGATTTAAGCATTTTGTTGTACTGTTTACTAAAGGAGGATTCTCATGCTTGTTCCTCCACTGAGTCACATTACACAGTCTGAATAGGTGCTAAAGTGGTCTAGACTTGCTCAGCAAAGGACAGAGAAGGCCTGGATTATTTACCCACCCATGTAAGGATTACAAACCATCTTAACCTGTCCATTAGCGCTGGGACCGTCTCAGACAGTCAGGCTACCGGACAGACCCTCTTTCACCTGAGCTCTAATCCACTGCACCAGAAGCCTGATCTGATAGAACCAGAGAGGCTGAACTGGACTGAAAAGCCCTGCTCATGCCCATGCTCTCTTTCTTGATTTCTTAAGctagatttagaaaaaaaaagatagggGTGTGTATCACAATCATCCATGTGCCATATGCAGATGAAtttcacataaacattttttttctgcattagaaccaaaaaaatccaaaaaaaaacttctaccAGCTCCGTTATTACAAGATCCGAGCAGGTGCCCAAATTGACGAGCATGATTCAGAAGCGATGTCTCCCCCTTCTggacattttgttaaatgtagaAAGCGTTGGAGAGATGCTGACAGAAAGCACAAGTAGACGCAGGATAAAGttctaaagctttttaaaacgtttttgcaTTGTGGCAGTTTTTCTGCGTGCTACCTAGTGTTACGAAGGACCTCAAACCAGACCGCGTGACTCATGAGTCATACTACGCATGACACGTATTCACATTCAAGTCACAGAAAATGAGTAGAGGTCGAcatctaaaagtttttttttaatctctctaCCTCACTTCGTCCAGCTGTTCGTGTCTCTTTGTGGCAGACACCGGCTCCCTGCGCATTAATTCGGCTTTAGAAGAACGAGCTGGGAGCGCAGACATTCATTAACATTCATCCGTTAAGCTGACGCTTTTATGTAAAGCTAAAAAACGAGGGATTTATTCTAAGCAGGCAGCCGATTGTCATTCCCTGATGTCACTCTCACCTGTCCACGTTTATTCTGTCAAGTCTGTAATTTACTGAGGGGTGAATTCAGACTCACTAACCACCgtcatcttcttcttctgacCTCAAACTAACTTAAGACACCAGCCAATTGTCGCAGTGATGTTTCCCTGACGGATAAATTTGACACGAGATCGGCCTTAGTGACGACAGTCCATCTATGCAGGTTGTCATGGTTACACGGAAAACCGTCAATTAAGAAGCGGAACATGTCTCTCGCGCTGTATAATCTCCCCTGTGGCTAATATGTAAGAGAGAAGGGGAGGTAAATACGGATCAAAGTTACAAaaggtaattattattttcgGTTCTCAAGTGAGTACGTAGCCCTAGCGGTACAAACTACCTTTTGAATCCGAAATAGGCTATATTATGAAGAAGTATAAAATACGATGCAGCACGATATATTCAAGGCTCTCAGTGAATCATGGAGGAATCGATTAAGGCTCttttgagaaaataataataataataataataataataaacttgtTGAGACGTATTGGTTTCGTGATAATCAAGCTGACAATTGTGTCAATCAAACGATCAGTACGCTTCTAAAAAAAGAGCGCTGAAGCGGTGTACTGTTGCTATAGCAACTTCGCGAACATTTAGCGCGTAATGATTAACGCGTAATCTTACTTTTGTGAATGGTGTAACGTGCGTTACAGACTCATGTAAcctaaccttttttatttatttatttgttccacTTTTACATAGATTACCTAAAATTAGCAGAGACCCCGTTCAACACTGATTATCTATTCATGCTTCCCATATAGGATATTATTACTAAAGAATTACGAATTTCAGGCGTTTTTCATATTCAGCAACATCAACAGGTCCAAACTCCGGGTATCAATCTTGAATCTTGCAGCCGTTATACCGTTACCGCGCTGTAAAGTTATTTGTGGTTTTGATTAACGAAGGATCCGAGATGATGAACGGAGCGTAGCTACGTGAGGAGGACTATAACGCGCACTGGTACTCCTACGCGCCTCTGATCGTTCATTCAGCACCACAGCAACCGAACAGCGACCGCGGCGAGCACGCCGACAACGGAGACGGGAacggtttatttttaaagcgcACGGCAGTCGTTGTCAAAGCGCATCGTCGCGGTTTACGCGCTCTCATCCGGACGCCTCGCGTGTTAACACGCGGACGCCTGACTACCGAAGGAATACGCGCTATAACGGAACGTCAAACGCGATTTGATCGAGAGCAACGTTCCGCTTagtaacatactttttttttttcctcgagGCTCCTCTTCTGTCGCAAATCATGAAATACTTTGAAACTGTTCGTTGTTCCGAAAGCGCGAACATACATCGAGAAAAACAGAATAGCGACCACCTCTTGTCGAGGCGAGCGGTCCGCCACACCTGACTTGTTTTTCTGCCTCCGGTTGTGACATGAAAACTCGGACCAGAAAGAAACGGATGAAAGGGCGAAGAGCTGCAAAAGGCCATGCGGATTTGAAAGGGAACATATCAGATTGAAGTGGGAGCCCGGAACAATCCACAAGTCCGAACCGCGACTGACAATCACAGGCATGGGGACACCAAAGATCAGGAGACGGTCGGAGGTCTCGCAACCTGTTGTTGATCCCGAGTAGACAGATTATTATATGCTATTATATCTAAACGGCAATGACTTTGGGGGGAAAACACGTGCTTTTGACTGATTTTTGTCTCGTTTCTTGATTTGTgtttcttaattattaatttgtggAGCGACTACATTGGACGCCTGGACTAGATCGAGTTGTTTTTTCGggaatataaaagtatatttatattaggaAATAAAACACCATTCATGGTTGGTTGGTTACCCTGATTCTGACCCTCTCCAGCCATGGGTTGCCTTCAGAGCGTCGCCTGCAAACCCCGAATTAAACGCGAGAACATCGTTGTTTATGATGTGTCCGCTACTATTGACCAGTGCCCCACAGTGATCGAGGAGAATTCACCCATAGTGCTCCGCTACAAAACTCCGTACTTCAAGGCCTCCGCTCGGATAGTAATGCCGCCGATCCCTCGAAATGAGGCTTGGATGGTGGGTTGGATTCAAGCATGCACTCAAATGGAATTCTACAACACCTATGGAGACCTCGGCATGTCAAGCTGGGAGCTGCCAGAGTTACGAGAAGGACTGGTGAAGGCCATCAGTGATTCAGACGGCGTGAGTTACCCGTGGTACGGAAACACGACTGAAACTGTGACTCTCTCCGGCCCCACGTCCAAACCTTCACGATTTACTGTCAGCATGAACGATAACTTCTACCCCAGCGTTACATGGGCCGTACCGGTGAGCGAGAGCAATGTGCCTTTGCTCACGCGGATCAAACGCGACCAGAGCTTTACCACATGGCTGGTAGCTTTGAATATGGCCACACAGGAGAAGATCCTCCTGCAGACTGTGAAGTGGAGAATGAAAGTGGACATCGCTGTGGACCCCTCTAAGCCATTGGGCTCTAGAGCAAGACTCACTGGCCGGATGCACCAGGACCAGCCCAAGGTGTTGACCCATATGGAGCTGATCCCTCCTAACGCTATGGGTAAACCCAATGCTAATGACGCACAAGTGCTCATGTGGAGACCTAAGCGAGGTCCACCATTAGTGGTGATTCCCTCCAAGTAGCAGGTTGTGGCAAAACCTGAAggtttttaatcaaaatctgCCTTAAATCCACACTGCTGCCTTTAAAGAGATACTTGGTTCTTAAACAGCCTTGGAGACACTTAAAGGGgcagttcataaaaaaaaaaaaaaaaaaaaatcttaattctatatttttttactcaccctcatgtcactccaaacttgtatgacgtttatttattttgtagaacacacacaaatatattttaaacaatgtttctGTCCATCCAATGACACAAGATAAAGGACCCTAGTCAGACAGGTTTAAGAAAAATTATAGTTTggttgaactgtccctttaatttgAAATTGACATTTGCCTTAAATCCTTAGACTCAAGTTCAGGAGAAGAAACCATACATCTGCTCTACAAAAAGGGATACTGCACCAAAAAccataaaaattctgtcatagtTTACTCACCTTTCCATCATTCGAAACTAttatactactatatatatatatatatatgtcagtGGGTTCCAATGTTTTTTGGTTCCCagtattcttcaaaatgttcttatgcagtaaacaaaatgacaattctTTATGGGTGGAGTATTCCTAAAAGGCTATTCAGCTATTCAGATTACTTAGCTCcaacattttctctttcaagTTCTCTGTAAGTGTAAAATGCCTGGGCTACACAGAAGCCAGTCTTGCTTAACATCTTAATTATAGATGAATCTATGTGGCAAAACAAAAGAAGCAGTTGTGCATGAATGTACGACTTCAGAAGGTCTACAGCCAAATTCAGCACTGCCTTTCAGTTCAACCAGTTTTACTGCAAGTAAATTTTGAAGGCAGAAGAAAGCTTTAACCATCAGATATGTTTGCTACTTAGCACTGCATAATGTAAGTAAGAAGAGATGTAAGACTTCTTAATTCCACTGAGCATAACCTGGACCGCGAATAACGCTGCAGTAGAAATGAGGGATCTTCAGCCGCTTAAGTTTCTCTGCTCTACGCTTAAGAATGTCTGGAGCTGTCTACTAATTCACTCTTCTGCTCACCTGGGAGCGAGGGAATCGAGGGAGGGGAAGAAAGAGATTTGAACAGTGCTGCAAACGCCAACTCCCACCGCTACTCATTAGAGAGGTGAAAACCATCCGGACCTTCCTACTGAGataacaaacacacatccagacacaaaagcacaacaaaCACTCAACTGCCTTCTTTGAAGCACCCTCCTCTAGAGAGTCCTGCGCCTGCACAAATTACAGTGGAGCGACtgtttgattaacaaaaatggATCCAATCAGATTGTTTGAAAGCATTAAAACCTCTGGATTTGAATTCACAATGCCATGTGGGATTTGCAGACTTCAAAAACGACCCAATGCTTGTCTACAGAGGTCACTGTAGAGTTTATTGATTTTGAGGTTCACAGTGTGTTCTGAAGGACTGGGGCAGCTAGAGTTGTCCTGACTGTAAAATCGATTtgcctttttaattaattaccttTTTCAAACTGTGACTGCATGCATTGTTTTTAcaccttttgaaaaaaaacaacaacccttttttttcagttttgtgctG

Function

symbol description
fam78bb Orthologous to human FAM78B (family with sequence similarity 78 member B).

NR:

description
protein FAM78B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92617 False 422 lncRNA 0.44 1 9707773 9708194
XM_043247557.1 True 6236 mRNA 0.43 2 9700394 9708621

Neighbor

gene id symbol gene type direction distance location
edem3 LOC107717559,LOC107585860,LOC107750782,LOC107548759,LOC107700180 coding downstream 82268 9606505 ~ 9618126 (-)
zgc:92140 zgc:92140,LOC107676598,LOC107585858,LOC107717558,LOC107700167,LOC107548740,LOC107750760 coding downstream 94428 9581828 ~ 9605966 (-)
colgalt2b colgalt2,LOC107751084,LOC107700142,LOC107585927,LOC107676963,LOC107717557 coding downstream 120541 9562094 ~ 9579853 (-)
rgl1 rgl1,LOC107750730,LOC107717560,LOC107657943,LOC107700121 coding downstream 148090 9528966 ~ 9552304 (-)
plin3 si:rp71-61h23.4,LOC107657942,LOC107717561,LOC107750720,LOC107700160,LOC107549942 coding downstream 174333 9521721 ~ 9526061 (-)
trabd2b si:ch211-120j21.1,LOC107717551,LOC107585868,LOC107676673,LOC107695245,LOC107548850,LOC108442342 coding upstream 77631 9786252 ~ 9837450 (-)
lpxn LOC107676702,LOC107717550,LOC107585869,LOC107695247,LOC107750911 coding upstream 143611 9852232 ~ 9856606 (-)
rfx2 rfx2,LOC107676724 coding upstream 191875 9900496 ~ 9933011 (-)
acer1 acer1,LOC107731201,LOC107676796,LOC107585930,LOC107550428 coding upstream 261507 9970128 ~ 9976762 (-)
myo1f myo1f,LOC107750961,LOC107585872,LOC107548903,LOC107731286,LOC107695252,LOC108413823 coding upstream 271015 9979636 ~ 9995108 (-)
G62525 NA non-coding downstream 173428 9526627 ~ 9526966 (-)
G62519 NA non-coding downstream 285955 9408414 ~ 9414439 (-)
G62293 glis1,LOC102303521 non-coding downstream 615200 9082795 ~ 9085194 (-)
G62250 dio1,LOC107700640 non-coding downstream 661694 9030865 ~ 9038700 (-)
G62263 lrriq3,LOC107657910,LOC107585823,LOC107699824,LOC107548466 non-coding downstream 693289 9006834 ~ 9007105 (-)
G62567 NA non-coding upstream 352 9708973 ~ 9709221 (-)
G62568 NA non-coding upstream 2025 9710646 ~ 9710996 (-)
G62576 NA non-coding upstream 23285 9731906 ~ 9732154 (-)
G62670 NA non-coding upstream 334567 10043188 ~ 10043398 (-)
G62749 mob3a,LOC107695254,LOC107585875,LOC104921817,LOC103368804,LOC107731185,LOC103137270 non-coding upstream 346430 10055051 ~ 10057928 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other downstream 437568 9257243 ~ 9262826 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 1043108 8652304 ~ 8657286 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 1050411 8647270 ~ 8649983 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 1283841 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 1467620 8117008 ~ 8232774 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 246060 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 286926 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 536575 10245196 ~ 10248156 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other upstream 680562 10389183 ~ 10392043 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other upstream 732143 10440764 ~ 10480051 (-)

Expression


Co-expression Network