smim24 (smim24,LOC107580287)


Basic Information

Item Value
gene id smim24
gene name smim24,LOC107580287
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10245196 ~ 10248156 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU92941
CATATTTACAGACGACTGAGAGGAACGCAGAATTGCGTGCGGACTGTAAATTCATCATGTCTCATCTACAGAATATAGTTGCCTTCATAATAATCTCTGCCTCCATTTGTCAGGCTCAAGCTGGTGGTCAACGGGCATCATCAGATACAGCTAAAGTCACGTTACAGCCGTGGCTGGTGGGACTGACAGCCGTTGTCGTTTTTCTCTTTGTTGTCTTCGTCCTCCTCATCATGCAGAGGCTCTTTTTCAAGAAAGACAAACATGAGCTGGAAGAAAGCCATTCCTTTTACGAAAACAAAGCAGCTGATCTGGAGGCATTCGAGGAGACCAAGCAGACCACTTTCTAATGAGAAGAACAGATGATCACGGTCCTGCAGCACAcaaatctttctctctctggaaATCATGCCACAACTGGCATAGAGTAATTATCATATACAATCTTATGTAATATATCTTTTTAACTTATTGATTTAATTACGTTTTGTCTTCATAAGTGTTGTTCCTCACATCGTCCACTAGATGGAGCAGCACTCACCTAGTCACAGCTGTAACCTTTgcgattgattttttttggcgTATTCTCAATACACGTTTTACTACTTTGCTGTAACTTAggtaacatttaaacattcattagGGTAATGAGAGCATTGGAATTGAAGAGCACACACTCAGGGAGTCACATCATGCACATAATGCTCTGATTAACCGGCTTTTGACTCGTATGACATGGGTTCTGCATGCATATATGCTAAATGGACATGGGTATGAGATCCATTACTCATTTTGACTGGCGGTTTGGACATGTTAAATGCTTCCAGTCAAATGATGTAACGcagttttgcttttgaaacCATTTGCTCGTCTCGGGGGGAATTATATGATGAAAATATCATTCGCAGAAAAAATGGCCAGGTGTTCAAATGTGTTAATGATGGAGACCATTACGGTTTAAAGTATACAGCGTTAAAGTTAAAGTAGACTTTGGTCTGGTGTTGCCTAAATGATTACTAAGACTGTTGAGCGGTTAGTTATGATGTAATAAACTGCCTAACGCATGCTTTTTATATTGATGTGGTTCCTCCCTTCGTGATTAAATAAAAGCTCATCTTTGGGTTAAATGGGAACGCTTCCAGTTTTATACTCTTATTGTAAACTTAAGAGCTGCTggtatttcataacattttaattaacgtTTAACTGCGAGTAGATAGCTGATACTGTTGCCTTGGCTGTGCTTCTCAAGGTTTCCCATACATGGGAAACAGTTTAGCTGAAACAGTGCTGATGAGTGACAGTAACTAAGCCTACAGTCAGCAGCAATAAGTGAAGCATGAAaccagagcgagagagagagagagacttcacTTCTGTCTCATTCACCACTGCTTCCttgaaatttttatttggttgtttttattcTGGTTCCTGAGCGACGTCATCTTTGCTTCACGCATCACTTTCTCTACTAATGCTCATTACTGCGAAGTTAAACGACAAAACCTCAGATAAAAACATTCTGAAgtcaaagagaaagagatactgataaaaaaaaaaaaatccatcggCTGAGCTCTGCAGATCTGATTTCAATCTGTTACTTTTTCTTGAATCAGTGAATCTATTTCAGTAAATGCTACCTATTGAATGTCTTTTATTCtcaccatttattttttcaaatacagtaaaagagcaaaattttgaaatattagtacgcattattttttttgtgtctttgtaaTGTATTCGTATGATGGCAAAGATGGATTTTCAGCagacattactccagtct
>XM_043246026.1
ATGGATTTTGTACTTTGGACACCAAGAATCCTTCACATATTTACAGACGACTGAGAGGAACGCAGAATTGCGTGCGGACTGTAAATTCATCATGTCTCATCTACAGAATATAGTTGCCTTCATAATAATCTCTGCCTCCATTTGTCAGGCTCAAGCTGGTGGTCAACGGGCATCATCAGATACAGCTAAAGTCACGTTACAGCCGTGGCTGGTGGGACTGACAGCCGTTGTCGTTTTTCTCTTTGTTGTCTTCGTCCTCCTCATCATGCAGAGGCTCTTTTTCAAGAAAGACAAACATGAGCTGGAAGAAAGCCATTCCTTTTACGAAAACAAAGCAGCTGATCTGGAGGCATTCGAGGAGACCAAGCAGACCACTTTCTAATGAGAAGAACAGATGATCACGGTCCTGCAGCACAcaaatctttctctctctggaaATCATGCCACAACTGGCATAGAGTAATTATCATATACAATCTTATGTAATATATCTTTTTAACTTATTGATTTAATTACGTTTTGTCTTCATAAGTGTTGTTCCTCACATCGTCCACTAGATGGAGCAGCACTCACCTAGTCACAGCTGTAACCTTTgcgattgattttttttggcgTATTCTCAATACACGTTTTACTACTTTGCTGTAACTTAggtaacatttaaacattcattagGGTAATGAGAGCATTGGAATTGAAGAGCACACACTCAGGGAGTCACATCATGCACATAATGCTCTGATTAACCGGCTTTTGACTCGTATGACATGGGTTCTGCATGCATATATGCTAAATGGACATGGGTATGAGATCCATTACTCATTTTGACTGGCGGTTTGGACATGTTAAATGCTTCCAGTCAAATGATGTAACGcagttttgcttttgaaacCATTTGCTCGTCTCGGGGGGAATTATATGATGAAAATATCATTCGCAGAAAAAATGGCCAGGTGTTCAAATGTGTTAATGATGGAGACCATTACGGTTTAAAGTATACAGCGTTAAAGTTAAAGTAGACTTTGGTCTGGTGTTGCCTAAATGATTACTAAGACTGTTGAGCGGTTAGTTATGATGTAATAAACTGCCTAACGCATGCTTTTTATATTGATGTGGTTCCTCCCTTCGTGATTAAATAAAAGCTCATCTTTGGGTTAAATGGGAA

Function

symbol description
smim24 Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: small integral membrane protein 24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92941 True 1795 lncRNA 0.38 3 10245196 10248121
XM_043246026.1 False 1165 mRNA 0.40 3 10245861 10248156

Neighbor

gene id symbol gene type direction distance location
myo1f myo1f,LOC107750961,LOC107585872,LOC107548903,LOC107731286,LOC107695252,LOC108413823 coding downstream 250088 9979636 ~ 9995108 (-)
acer1 acer1,LOC107731201,LOC107676796,LOC107585930,LOC107550428 coding downstream 268434 9970128 ~ 9976762 (-)
rfx2 rfx2,LOC107676724 coding downstream 312185 9900496 ~ 9933011 (-)
lpxn LOC107676702,LOC107717550,LOC107585869,LOC107695247,LOC107750911 coding downstream 388590 9852232 ~ 9856606 (-)
trabd2b si:ch211-120j21.1,LOC107717551,LOC107585868,LOC107676673,LOC107695245,LOC107548850,LOC108442342 coding downstream 407746 9786252 ~ 9837450 (-)
dohh dohh,LOC107745802,LOC107548993,LOC107585881,LOC107695215 coding upstream 5734 10253890 ~ 10256950 (-)
LOC122349939 LOC107731225,LOC107701761,LOC107585934,LOC107745801,LOC107550447,LOC100005423 coding upstream 8989 10257145 ~ 10259192 (-)
haus5 LOC107731222,LOC107585885,LOC107745798,LOC107695262 coding upstream 16685 10264841 ~ 10271997 (-)
si:dkeyp-82a1.6 LOC107550035 coding upstream 32147 10280303 ~ 10284362 (-)
zgc:112962 LOC107695265,LOC107745796 coding upstream 36336 10284492 ~ 10291110 (-)
G62789 NA non-coding downstream 88003 10156975 ~ 10157193 (-)
G62788 NA non-coding downstream 92291 10152239 ~ 10152905 (-)
LOC122350767 NA non-coding downstream 94205 10127885 ~ 10150991 (-)
G62768 NA non-coding downstream 167544 10077417 ~ 10077652 (-)
G62749 mob3a,LOC107695254,LOC107585875,LOC104921817,LOC103368804,LOC107731185,LOC103137270 non-coding downstream 187268 10055051 ~ 10057928 (-)
G62795 NA non-coding upstream 2477 10250633 ~ 10253256 (-)
G62800 NA non-coding upstream 15662 10263818 ~ 10264761 (-)
G62805 NA non-coding upstream 53506 10301662 ~ 10301885 (-)
G62817 NA non-coding upstream 77585 10325741 ~ 10327208 (-)
G62821 NA non-coding upstream 122177 10370333 ~ 10373331 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other downstream 203427 9995547 ~ 10041769 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other downstream 275711 9954681 ~ 9969485 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other downstream 536575 9700394 ~ 9708621 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other downstream 982370 9257243 ~ 9262826 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 1587910 8652304 ~ 8657286 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other upstream 141027 10389183 ~ 10392043 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other upstream 192608 10440764 ~ 10480051 (-)
trnar-ccg_26 NA other upstream 292063 10540219 ~ 10540291 (-)
cep104 cep104,LOC107668088,LOC107745778 other upstream 725149 10973305 ~ 10990735 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other upstream 847984 11096140 ~ 11131238 (-)

Expression


Co-expression Network