cep104 (cep104,LOC107668088,LOC107745778)


Basic Information

Item Value
gene id cep104
gene name cep104,LOC107668088,LOC107745778
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10973305 ~ 10990735 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU93206
TGGAGATAAACGTAGGCAACTGCTGTATCTGGAGATCAGGTACGGGATGCCTCATAAGATAGGCTTCACTGTGATCAGCTGGTCTGGTCATGAAGGAAACTACAATGCCAAAAAGCTGATGGTCCACGCGCCCACAGTCAATGGCTGGAGATCCACCagGTTCTGTCCATTTCCTCAGGAAATCATATTGCAGTTGGTCGAGAGATGTCGCATCCGGAAACTCCAGCTACTGGCCCATCAGTACCTGATTCCTTCCAAGATCGAGTTCCACATAGGAGACAGACTGCCGGAGTCCAGCTCGCCCCAGCAGACTCACAGTCTTCACAGATTGGGGTATGTGTCCCTCTCTGACAACGAGAAGACGGCTTTCAGAGCCAGAGAGCTGAAGTCTGTTCATGTTGATGCTGTTGGGTCTTACTTGAAGCTCACTTTTCACAGAAACCATGTTAATCAATACAACATCCACAATCAGGTTGCCTTGGTGGCCCTAAATATCTTGGGTGACCCTGTGGATGGAAATGACACTGGGACGGCACTAAGCAGAGATCAACTGATCGATAAGTACCTAAACAGCAGCCAATACAGCTCAGCTTTGGATGGCACATACACTGGGCTCTCAAGTTATAAATGCGATTCTATCTCGCCACTCGATGACTTGGCGTTTGACATGTATCAGGACCCTGAGGTGGCCCATATATCATTCGTCTGCTGGACC
>XM_043246050.1
CGCACACGATTCAGTTGTCAAACGGTGGTTATGGAGATAAACGTAGGCAACTGCTGTATCTGGAGATCAGGTACGGGATGCCTCATAAGATAGGCTTCACTGTGATCAGCTGGTCTGGTCATGAAGGAAACTACAATGCCAAAAAGCTGATGGTCCACGCGCCCACAGTCAATGGCTGGAGATCCACCagGTTCTGTCCATTTCCTCAGGAAATCATATTGCAGTTGGTCGAGAGATGTCGCATCCGGAAACTCCAGCTACTGGCCCATCAGTACCTGATTCCTTCCAAGATCGAGTTCCACATAGGAGACAGACTGCCGGAGTCCAGCTCGCCCCAGCAGACTCACAGTCTTCACAGATTGGGGTATGTGTCCCTCTCTGACAACGAGAAGACGGCTTTCAGAGCCAGAGAGCTGAAGTCTGTTCATGTTGATGCTGTTGGGTCTTACTTGAAGCTCACTTTTCACAGAAACCATGTTAATCAATACAACATCCACAATCAGGTTGCCTTGGTGGCCCTAAATATCTTGGGTGACCCTGTGGATGGAAATGACACTGGGACGGCACTAAGCAGAGATCAACTGATCGATAAGTACCTAAACAGCAGCCAATACAGCTCAGCTTTGGATGGCACATACACTGGGCTCTCAAGTTATAAATGCGATTCTATCTCGCCACTCGATGACTTGGCGTTTGACATGTATCAGGACCCTGAGGTGGCCCATATCATTCGTCTGCTGGACCAGAAAAAACAGGACATGGTTCGAGAGGAAAGATTTGATCTGGCCAAAAACTCAAACAAGCTATATCGAGACCTGCAGAAGgtgGGTGAGCGTTTGGGCCGGTATGATGTGGAGAAACACAGTGCCATAGAACGAGAGGACTATGACACAGCCAAACAGAAAAAGGAACAAATGGAAGCTTACAGGCTCACAGTCTACCATCAGCTGGAGCTCCATGACCTGTTAGACATCAGTCAGATCCACAGAACGTCTGAGCTTTCCATCTCAGATTTTTCCTCTCCACGTGTTGGGACACAGAAAGACACGCCACATCCAGCAGACTCACCCAGAAAGAGAAGACAGAGGCAACATGTGAAGGAGACAGGCAGGCATgccatttcaaaaactgctagCCCCAAACATACAGTCGCCTTAACACCTCTCACTCCTCCTCACGTCCCCAAGCTCGATATTAGTTCCCTTCCTTATGATGAGAGGCCTTTACCAGCACTTAAAAAGAGGTCGAGTGATCAGCCAATCAGCGAGCTTGATAAAATACACCCTGTGACAGGTACAACCACCCCACGTAGTCCTGGAGCCTCGGGACAACCAGAACCGCTCACAGAGAAAGCTCAGAGAGAGGCCAGTCTGTCCATCGACATCTTTGGAGACAATCTGGTGGCAGGGGCCTATTCCAAGACGTGGTCCTACAGGGAAGATGCTTTGCTGGTGGTCTACAAGAAACTGCTGGAGGTTCCACCTGGAACCCCGAAAGCAGAATCATGGAGCATGAAAGCAGCAGTGTTTCTCTGCAAGAAAGCTCTCACAGATAAAGTGTCATCTgTGTTTCTTGCATCTCTGAATCTGCTTCGAATGATTCTGAGTGAGTTTATTCCTAACCATCAGCTAGGCAAATCTGAAATCAATCACTGTGTGGAACAGACTTGGAATAATCTGCTGTCCAGGACTGGAGAATCAACCCCGAGATTGAGAACACTCGCTATTACCTTCATACAGGAAATGGCTTTGTTTAAGGAGGTGAGAGCTCTGCAGATGGTTCCTGTGGAGCTTGTGAGGCCCATGCAGAGCACTGTACCCACTAGACTGGCTCTGAGCAGGCTGGAACTGTTGGAGAAGCTTCTAGAACAGCTGGGCACCAAGGACTCTGGCTTCACCCTCGACAACATCATGCGGTTTCTGGCAGGTGGATTGGAGCACAGCGCTGCCTCGGTGCGAGAACTTTCTGTGAGAGTCGTCCAGGCTATGTACCGTCTTCATGGAAAAGCAGTATTGAATTTTCTGCCACCCGATGACACCAGCACACGTAAAAATGTCCTCTACAAGAACCTTTTTGACTCACTCGCCGCGATAGATGGAAACGCCATCGACACGCAGAAGCCAAAAAAAGGAGCAGAAAAAGAAGAtggtgagaaagaaaaagaggaaatcaGAAGCTTGCAAGAGCAGCTTGCAGTACTGAAGGAGATCAGCGAGAAAGGGAAGGAAAATACCAAAGTACCTGAGAAAAAAGCTGAGAAGTCAGTCAAATCAGCAGGTGTTAAGAAGGTAAACCAGTCTGTTCCTGCCGATGCAAAAGGAAGCCAACCATCTGTAGCTAACTACTTAGACAATCTGTGTATTTTCtgtggagagagagatgagtcGTTTACAGAGGATGGGCTCGACCTGCACTATTGGAAACATTGCCCGATGCTGCAGCGCTGTCTTCAGTGCAgacagGTGGTGGAGATTGCGAGCCTGACGGAGCACTTGCTGACTGAATGTGAGCGGAGGGCGGATTTCACCCAGTGTCCTCTCTGCTCCGAAGCGCTCACTCGACATAAGCTGACTGAGCATGCTCGAAGCGCAGCTTGCAATCcacCAACTTCTGTAGAAAACTGCAATCATTGTCCTCTCTGCCATGAAAACTTTGCCTCAGGGGAAGAGGGCTGGAAGTCTCACCTCATGGGAATCGAGGGTTGTAAACAGAACTCACGGAGGAGAGCGGCACAACAGAGCAGACCCCCACACGCACAAGGTAAGGACGACAACAATCACATCCGAGTCCAAGCCTCGAGGTCTGGGCAGAGGCAGTCGCATCCCTGCTCCAGCTTCCAGGATCAACAGACGCACCAGAATTCTTCCAGGCAAGGCCTCCAGTCACCGACTACAACAGGCATAGCTACATGCTACCTCTAGTAGCTTtgctaaaataatcaaaaaaaactCACACAAATCTACTTTATATCAGGTTTCAAATGATGCATTATTGCTGTACTGATTTAGAAATAAATCTAGACAGCATCATTATTGTCTTTGACACCTGATATAAAATGTACCTATTAATGAATGTAAAAGA

Function

symbol description
cep104 Acts upstream of or within cilium assembly; cranial nerve development; and heart looping. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in Joubert syndrome 25. Orthologous to human CEP104 (centrosomal protein 104).

NR:

description
PREDICTED: centrosomal protein of 104 kDa isoform X3

GO: NA

KEGG:

id description
K16458 CEP104; centrosomal protein CEP104

RNA

RNA id representative length rna type GC content exon number start site end site
TU93206 False 715 TUCP 0.49 7 10987446 10990704
XM_043246050.1 True 3081 mRNA 0.48 24 10973305 10990735

Neighbor

gene id symbol gene type direction distance location
c8h1orf174 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding downstream 5218 10964582 ~ 10968087 (-)
LOC122350349 nphp4,LOC107695281,LOC107550077 coding downstream 11315 10826429 ~ 10961990 (-)
LOC122349966 NA coding downstream 439967 10529443 ~ 10533338 (-)
LOC122349964 ela2l,LOC107745782,LOC107695279,LOC107549241 coding downstream 444588 10526347 ~ 10528717 (-)
LOC122349990 gpr37l1b,LOC107731282,LOC107668115,LOC107585901,LOC107695275,LOC107549203,LOC107745785 coding downstream 482105 10487790 ~ 10491200 (-)
LOC122349916 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding upstream 143968 11134703 ~ 11137541 (-)
LOC122349917 cep104,LOC107668088,LOC107745778,LOC107695283 coding upstream 150448 11141183 ~ 11159286 (-)
lrif1 NA coding upstream 232305 11223040 ~ 11228121 (-)
apex2 apex2,LOC107668008,LOC107550000,LOC107695293,LOC107549375,LOC107745771 coding upstream 238594 11229329 ~ 11232003 (-)
csde1 csde1,LOC107731193,LOC107549382,LOC107695294,LOC107549999,LOC107745769,LOC107668033 coding upstream 244739 11235474 ~ 11250583 (-)
LOC122351000 NA non-coding downstream 148254 10819217 ~ 10825051 (-)
LOC122350960 NA non-coding downstream 173342 10755389 ~ 10799963 (-)
G62861 LOC107549259,LOC107745781,LOC107668121,LOC107555602 non-coding downstream 275180 10696335 ~ 10698125 (-)
G62835 alas2,LOC107731137,LOC107555603,LOC107549233,LOC107745783,LOC107667982 non-coding downstream 450818 10520659 ~ 10522487 (-)
G62829 NA non-coding downstream 488706 10383720 ~ 10484599 (-)
G62974 NA non-coding upstream 206418 11197153 ~ 11205373 (-)
G62977 NA non-coding upstream 210960 11201695 ~ 11210161 (-)
G62992 NA non-coding upstream 285624 11276359 ~ 11276914 (-)
G63014 NA non-coding upstream 416219 11406954 ~ 11441996 (-)
G63065 NA non-coding upstream 532287 11523022 ~ 11523638 (-)
trnar-ccg_26 NA other downstream 433014 10540219 ~ 10540291 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other downstream 493254 10440764 ~ 10480051 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other downstream 581262 10389183 ~ 10392043 (-)
smim24 smim24,LOC107580287 other downstream 725149 10245196 ~ 10248156 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other downstream 931536 9995547 ~ 10041769 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other upstream 105405 11096140 ~ 11131238 (-)
smim1 smim1,LOC107668050 other upstream 140935 11131670 ~ 11169473 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other upstream 293619 11284354 ~ 11345988 (-)
G63095 NA other upstream 571543 11562278 ~ 11615925 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other upstream 787536 11778271 ~ 11779251 (-)

Expression


Co-expression Network