smim1 (smim1,LOC107668050)


Basic Information

Item Value
gene id smim1
gene name smim1,LOC107668050
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11131670 ~ 11169473 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU93215
aaatgacacgTTTCTGAGCAAACTATAACTGGCAGGCGAGAAATAGCATATTATAGAACATTAACATTAAGCAGACTGTTAACAGACATGTGTCTGCTAGGGATTtcatgaaattttaattttaattaaataactatttatacacatttattactGCATAATAAAAGCCTATTTCACTCAGGGGACCTGACCGGcagttagatttttatttaaccaGCACAGTAGGTAGTTGAAGTATTTCATTTATGACAGGCTGTGAGCAAAGGTTTACCTGAATGACCTCAGGGACCCACCGCTCTTTAGAAATGACATACGTGAGACAGATTCAGAGACTAAGACTTACCAGCTCATGTCCTGAGAACATCTGACTAAGGAGCAGAGAGCTGGGAGGAAATGGAGTCCAATGAGGCCAGTGTTCAGTACAACCGCTGGAATGAAGACAACATGAACATGCAAGCGCCGCATTCACAAACCAGACTGATCGATCTCTATAACAGACTGTGCACCGGACGACTTGGCATTGCAATGAAAACGGCACTGTCTTTGACATTGATGGTAGTTGTATACATTGTTGGATACATCACAGGATACTACGTTCACCAATGCTGAAGAGGACACACTGATTCACGTATTGATGGATCTAGCTATTTAAGGAACTGGCTGTTATTGAAACATGAATTGTGTCCATCAAAGAAGTGTAAAcatgtataaaatgtgaattatgaATTACAGCAGCTGCATCCAAACGCTTGCCACTGTAATGTTAATACCGATATCAGTAATAATCCGCATTTTTATACCTTAAGTAAACTACATGCTTTTTAACCAGCTCCTTCAGGTTAGTAGCCGCAATTCCGTATTTTCTGGCCTCGTTGGCGCTTCTTATTTTAACCAACTTGTGTTTTGTTACTTTGCGCATATTTTCTT
>XM_043247639.1
ACAGTAGGTAGTTGAAGTATTTCATTTATGACAGGCTGTGAGCAAAGGTTTACCTGAATGACCTCAGGGACCCACCGCTCTTTAGAAATGACATACGTGAGACAGATTCAGAGACTAAGACTTACCAGCTCATGTCCTGAGAACATCTGACTAAGGAGCAGAGAGCTGGGAGGAAATGGAGTCCAATGAGGCCAGTGTTCAGTACAACCGCTGGAATGAAGACAACATGAACATGCAAGCGCCGCATTCACAAACCAGACTGATCGATCTCTATAACAGACTGTGCACCGGACGACTTGGCATTGCAATGAAAACGGCACTGTCTTTGACATTGATGGTAGTTGTATACATTGTTGGATACATCACAGGATACTACGTTCACCAATGCTGAAGAGGACACACTGATTCACGTATTGATGGATCTAGCTATTTAAGGAACTGGCTGTTATTGAAACATGAATTGTGTCCATCAAAGAAGTGTAAAcatgtgtgtttaaaatatgtttttaaataaatgaccttATTTGAACATCGTATCTTAACCTGTGTTAACAAATACTCAAATCAAAAAGCTAAAAGCCTATAATTCGCTGTTAGACCAAGAATAAAATAACGTTATCAGTAAACACTTTACAACGAggtttaatttttgattaatgtaTTATCATGAACTAACAAGG
>XM_043247640.1
AAATTATGCTTTGATTCAGATTTGCATATAAAGTAGTAAAAGCTTGATTGTAACTGTATTCCTGTAGTACATACTTTAGGTATTGGGGAACAACAGCTCTAATTCTGTGAAACATTGAATACGAATACAAAATATAGGTCTATAGCAGCTGTATATACAATATGTAGACTGGACCTGAGTGTTTTATCTTGTTCATTAACTCTTCTTTTTTATGGATTACTGAATTGCTGAATTATTAACTTTCCAAGACACAGCAACGTCCATAACCGGAAAGTAAATACAGCCTTAAGCTCTCCGAAAGACACTTTCTTGAACTGACTAAGGAGCAGAGAGCTGGGAGGAAATGGAGTCCAATGAGGCCAGTGTTCAGTACAACCGCTGGAATGAAGACAACATGAACATGCAAGCGCCGCATTCACAAACCAGACTGATCGATCTCTATAACAGACTGTGCACCGGACGACTTGGCATTGCAATGAAAACGGCACTGTCTTTGACATTGATGGTAGTTGTATACATTGTTGGATACATCACAGGATACTACGTTCACCAATGCTGAAGAGGACACACTGATTCACGTATTGATGGATCTAGCTATTTAAGGAACTGGCTGTTATTGAAACATGAATTGTGTCCATCAAAGAAGTGTAAAcatgtgtgtttaaaatatgtttttaaataaatgaccttATTTGAACATCGTATCTTAACCTGTGTTAACAAATACTCAAATCAAAAAGCTAAAAGCCTATAATTCGCTGTTAGACCAAGAATAAAATAACGTTATCAGTAAACACTTTACAACGAggtttaatttttgattaatgtaTTATCATGAACTAACAAGGAAC

Function

symbol description
smim1 Acts upstream of or within nucleate erythrocyte development. Predicted to be intrinsic component of plasma membrane. Orthologous to human SMIM1 (small integral membrane protein 1 (Vel blood group)).

NR:

description
small integral membrane protein 1

GO:

id name namespace
GO:0048823 nucleate erythrocyte development biological_process
GO:0031230 intrinsic component of cell outer membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93215 True 927 lncRNA 0.39 4 11131670 11169473
XM_043247639.1 False 680 mRNA 0.39 3 11168084 11169255
XM_043247640.1 False 851 mRNA 0.36 3 11168081 11169099

Neighbor

gene id symbol gene type direction distance location
c8h1orf174 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding downstream 163583 10964582 ~ 10968087 (-)
LOC122350349 nphp4,LOC107695281,LOC107550077 coding downstream 169680 10826429 ~ 10961990 (-)
LOC122349966 NA coding downstream 598332 10529443 ~ 10533338 (-)
LOC122349964 ela2l,LOC107745782,LOC107695279,LOC107549241 coding downstream 602953 10526347 ~ 10528717 (-)
LOC122349990 gpr37l1b,LOC107731282,LOC107668115,LOC107585901,LOC107695275,LOC107549203,LOC107745785 coding downstream 640470 10487790 ~ 10491200 (-)
lrif1 NA coding upstream 53567 11223040 ~ 11228121 (-)
apex2 apex2,LOC107668008,LOC107550000,LOC107695293,LOC107549375,LOC107745771 coding upstream 59856 11229329 ~ 11232003 (-)
csde1 csde1,LOC107731193,LOC107549382,LOC107695294,LOC107549999,LOC107745769,LOC107668033 coding upstream 66001 11235474 ~ 11250583 (-)
porcnl LOC107731263,LOC107549961,LOC107668005,LOC107695296,LOC107550497,LOC107745836 coding upstream 81408 11250881 ~ 11256508 (-)
magixa magixa,LOC107731248,LOC107668068,LOC107549995,LOC107695301 coding upstream 181831 11351304 ~ 11392671 (-)
LOC122351000 NA non-coding downstream 306619 10819217 ~ 10825051 (-)
LOC122350960 NA non-coding downstream 331707 10755389 ~ 10799963 (-)
G62861 LOC107549259,LOC107745781,LOC107668121,LOC107555602 non-coding downstream 433545 10696335 ~ 10698125 (-)
G62835 alas2,LOC107731137,LOC107555603,LOC107549233,LOC107745783,LOC107667982 non-coding downstream 609183 10520659 ~ 10522487 (-)
G62831 NA non-coding downstream 697554 10431781 ~ 10434116 (-)
G62974 NA non-coding upstream 27680 11197153 ~ 11205373 (-)
G62977 NA non-coding upstream 32222 11201695 ~ 11210161 (-)
G62992 NA non-coding upstream 106886 11276359 ~ 11276914 (-)
G63014 NA non-coding upstream 237481 11406954 ~ 11441996 (-)
G63065 NA non-coding upstream 353549 11523022 ~ 11523638 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other downstream 432 11096140 ~ 11131238 (-)
cep104 cep104,LOC107668088,LOC107745778 other downstream 140935 10973305 ~ 10990735 (-)
trnar-ccg_26 NA other downstream 591379 10540219 ~ 10540291 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other downstream 651619 10440764 ~ 10480051 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other downstream 739627 10389183 ~ 10392043 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other upstream 114881 11284354 ~ 11345988 (-)
G63095 NA other upstream 392805 11562278 ~ 11615925 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other upstream 608798 11778271 ~ 11779251 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 881884 12051357 ~ 12054530 (-)
G63385 NA other upstream 1094221 12263694 ~ 12264533 (-)

Expression


Co-expression Network