prok1 (prok1,LOC107680267,LOC107711938,LOC107731240)


Basic Information

Item Value
gene id prok1
gene name prok1,LOC107680267,LOC107711938,LOC107731240
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12051357 ~ 12054530 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU93778
tttacttataaatcaaataaatcactGTAACAtagatcaaaataaaaaagcaaatactTTATCATCCGTACGCATTATCACTCTCATTTTACACGTTAACAAAGGCTTTAACAAAGCCATGTAGGGCTAGATCTATGCGCTGGGAATGAATATGTGACTGATGTTGCgtcgtgtttgtgtgtcaggCATGTGACAGGGATGTGCAGTGCGGAGTGGGGCTGTGCTGTGCtgtgagtctgtggctcagaGGCCTGCGTATGTGCACACCACAGGGGCTGGAAGGAGACGAATGCCACCCGTACAGCCACAAGGTATACAGATTCACACAGCCGGGAGAAACCCCTCCAGAACATGAGCTCTGATTTGACTGGCTGACCTGAGGCAACTGAAAGAGAAGGAGATAAACAGAGGAAAGATCAAAGAGaaagacaattttattttagactAATCAGATCGGACATACAGCTTATACAGTCGGCCTCAGacagaaattaaaatcatttcctCACCCTCGAGTTGTTCCCAACCTGTACGAGTTTCGTTCTTGTGACGAACTCAAATGAaaacccattgacttccatagaaaTAGTCATTAAGGGTGTTTGCGTTTAAGTAAAAAGAAGCACGTTGGATTCAAGACAGCTGATCGGATTGTAGAGTAAACATGGGTGACTGCCGGAGATGGCTGAGAAAGGTTTTAAAAGAATCTGCTGATAAGAGTAACCGGTATCGATCGAATGTCTCACAGATCAGGGCTGTTTATCACTCTGTCGGACAGTCTCAGACTGATATGGAGATACAGAAGCTTTGCCATTCAGCTGAGGTTACGAGGCGAAGAGGAACAGATTCGGAGGGTGTTTGTGACTCACTGATGACTAGTAAAACTGACAAGATCCTTAAACGGAAACCTAAGCCTATAGAGTTTTGTAATGGATCTTGATTAGCTAACCCAACGGCTGAAAGACtgaattaaaaagataaaatgtaaataattcacagtttgtgtttttatgtgctgATCTAAGAGTTAATCaactatatgaaataataatcttATCTATCGACTAATGAAGTTATCTGCGTGTTTTGACCGCAGGTTCCTTTCCCCGGCAAGAGACAACATCACACCTGCCCCTGCCTGCCACATCTGGTGTGCACCAGGTACAACGACAACAGATACCGCTGTACCAGTGACTTCAAAAACATAGACTTTTAACATTGGAAATGTGAGAAAGAGACAAGTGAAGGTGGGGAATACTTGAAAAGGAACAGCACAAGAAGATTAATGACAAGTGCCATAGCACCTTTCTGGTCACGTTCATTTTTCACTGCACTTTGCACTACAAAAATTATCACGGCACCACGGCACGAGGTCTACCTCAGAATCGCTGGTTTACCTTggcattgtaaaaaaacaacgcTAGTTTCATCACCTGTACGTGAGCACACATGCAAACAGGCATTTCGTAAGGAATGTGCTTAGGAGGAAATCGTATTTTCTTCAATATGCTGTGAATTTGTCGAAGgcttaattattgttattaaattattatccGTCTGAATGGTCTTCGTGCTTTTCTCACTGCGTGAGTAGGTGCTGGGTGTGCGAAACAAACACGCGCT
>TU93808
aaaaacaataactgGAGGATTTACTGAAAGATTTTATAGCAATTTGAGCTCTAGTGATTCCCAACCAGGGGTACTTGgacagatttagattttttaaaccTATAACACAGgaataaagttattttcaggaaataaaacaaaaattaataaccaaaatattgttttgtgtgtCCTTATAAATTAGTGTGGACACTCATACCAGAATAtatgtaaaccttttttttttttaccactaaTATATCAGCggtaattttattaaattagaaaatgacTTCTTCTTtgaaatcatattaaatataaaatgagcTGACAATATGAGCGCATTTCAGTAAAGGGGTGCTTGAGGggggcataaaaaaaaaaagactggcaAATAATGCTCTTCTAAATTTAACTCAGCTGATGTAAAATCACACAAACCCCATGAAAAATGTACTACTCTAGCTGGTGTCATTAGGAAGGATTAGCTTGAAGTGAAACGTCCAGTGAGGTCTCTTCTCCATCATCCGGTCCAGCGTCATACAGAAAGAGATGACGAAGTCCCTGCGGAGGTGTGGGTGGGGGGGAGAGAGGGGCGAggggagataaagagaaagagagatggagaaagaaagagagagacagagtcaGACCTCAGACCTCATTTAAGAAGTTACCAAAGACTCCACACTCTGAGACAGGAGGAAAGGGACAGCCGAGAAAGTGAAGTCATCTCAGGGTCATACTAAATCCTCCAGGAGCTCCACGGCACAGAAGAGAGATAAAagggagaataaaaaaaacacataaaagacCGCTTAAGCTCTTAGTGTCTGTGCCCCGCTGCTGCTATGAGCAGGGTGTTGATTCTGTCCGTGCTCCTGCTGTCCCTGAGCTGGTGCAGATGTGCCGTCATCACAGGGGTAAGTCCGACAAATCATCTGCTTTTATTCAACgtaattctattatttaatCACGCTTTAATTGAATcgatcatttatttatgcaattatacaTAAGCTGGCTCGGTTGGCTTGAAATTTCAATAATTAATGGTGAAAAAAGTTAATTGTAGGTGTGCTTATGtcccaaaatgtatttatttaatttgtgatttgCCTTAATTTTGCTTGTTGggattaattgtttaaaaagcgTGTTTGCTATGTGTaaattgtattacatttaaaaaaataaatacaaatttgttaattaattaaattaataatataataaatcttTTACAATcaaattgcaaacattttttgaacgtttttccacatttttctaTATAATGCCTAACtgatatttttctgtattttatcatttttttcccccaaacttTTCttgctcaatatttttttgcCCCAATTAACATCCTccatattgtattgcattgtcATTTCacgtaaaatattaaa
>XM_043246585.1
AAGTCCCTGCGGAGGTGTGGGTGGGGGGGAGAGAGGGGCGAggggagataaagagaaagagagatggagaaagaaagagagagacagagtcaGACCTCAGACCTCATTTAAGAAGTTACCAAAGACTCCACACTCTGAGACAGGAGGAAAGGGACAGCCGAGAAAGTGAAGTCATCTCAGGGTCATACTAAATCCTCCAGGAGCTCCACGGCACAGAAGAGAGATAAAagggagaataaaaaaaacacataaaagacCGCTTAAGCTCTTAGTGTCTGTGCCCCGCTGCTGCTATGAGCAGGGTGTTGATTCTGTCCGTGCTCCTGCTGTCCCTGAGCTGGTGCAGATGTGCCGTCATCACAGGGgCATGTGACAGGGATGTGCAGTGCGGAGTGGGGCTGTGCTGTGCtgtgagtctgtggctcagaGGCCTGCGTATGTGCACACCACAGGGGCTGGAAGGAGACGAATGCCACCCGTACAGCCACAAGGTTCCTTTCCCCGGCAAGAGACAACATCACACCTGCCCCTGCCTGCCACATCTGGTGTGCACCAGGTACAACGACAACAGATACCGCTGTACCAGTGACTTCAAAAACATAGACTTTTAACATTGGAAATGTGAGAAAGAGACAAGTGAAGGTGGGGAATACTTGAAAAGGAACAGCACAAGAAGATTAATGACAAGTGCCATAGCACCTTTCTGGTCACGTTCATTTTTCACTGCACTTTGCACTACAAAAATTATCACGGCACCACGGCACGAGGTCTACCTCAGAATCGCTGGTTTACCTTggcattgtaaaaaaacaacgcTAGTTTCATCACCTGTACGTGAGCACACATGCAAACAGGCATTTCGTAAGGAATGTGCTTAGGAGGAAATCGTATTTTCTTCAATATGCTGTGAATTTGTCGAAGgcttaattattgttattaaattattatccGTCTGAA

Function

symbol description
prok1 Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in circadian rhythm; positive regulation of cell population proliferation; and regulation of angiogenesis. Predicted to be active in extracellular region. Orthologous to human PROK1 (prokineticin 1).

NR:

description
PREDICTED: prokineticin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU93778 True 1623 lncRNA 0.42 1 12051357 12052979
TU93808 False 1400 lncRNA 0.35 1 12053131 12054530
XM_043246585.1 False 957 mRNA 0.48 3 12051418 12053993

Neighbor

gene id symbol gene type direction distance location
zgc:110353 zgc:110353,LOC107680259,LOC107711939,LOC107591867,LOC107668023,LOC107731165,LOC107550464,LOC107711928 coding downstream 38207 12010488 ~ 12013150 (-)
adora1b adora1b,LOC107550463,LOC107711940,LOC107668012,LOC107591868,LOC107731293,LOC107680252 coding downstream 68048 11977200 ~ 11983309 (-)
dclre1b LOC107731274,LOC107668110,LOC107550475,LOC107712006,LOC107678930 coding downstream 76528 11970741 ~ 11974829 (-)
lhfpl5b lhfpl5b,LOC107591869,LOC107745833,LOC107731128 coding downstream 160074 11883738 ~ 11891283 (-)
c8h1orf194 LOC107731283,LOC107668109,LOC107549965 coding downstream 208505 11841181 ~ 11842852 (-)
rbm15 rbm15,LOC107731203,LOC107680058 coding upstream 23709 12078239 ~ 12083038 (-)
alx3 alx3,LOC107680275,LOC107711935,LOC107731154,LOC107591866,LOC107668019 coding upstream 31389 12085919 ~ 12091662 (-)
kcnc4 kcnc4,LOC107731196,LOC107668031,LOC107711934,LOC107679013,LOC107591816 coding upstream 95457 12149987 ~ 12168140 (-)
hspa1b si:ch211-199o1.2,LOC107668030,LOC108442126,LOC104926754 coding upstream 114357 12168887 ~ 12171370 (-)
ahcyl1 ahcyl1,LOC107731197,LOC107668032,LOC107591817,LOC107679038 coding upstream 117659 12172189 ~ 12189485 (-)
G63350 NA non-coding downstream 28604 12022515 ~ 12022753 (-)
G63347 NA non-coding downstream 31404 12019711 ~ 12019953 (-)
G63344 NA non-coding downstream 34006 12016726 ~ 12017351 (-)
G63304 LOC107549947,LOC107731153,LOC107668018,LOC107591857,LOC107745734 non-coding downstream 195295 11855745 ~ 11856062 (-)
G63254 LOC106565120 non-coding downstream 228113 11821284 ~ 11823244 (-)
G63321 NA non-coding upstream 50048 12104578 ~ 12139398 (-)
G63316 slc6a17,LOC107668054,LOC107731213,LOC107712000,LOC107678997 non-coding upstream 76961 12131491 ~ 12134728 (-)
G63329 LOC107711999,LOC107550488,LOC107668094,LOC107731126 non-coding upstream 104659 12159189 ~ 12198367 (-)
G63395 LOC107591850 non-coding upstream 248198 12302728 ~ 12304329 (-)
G63404 NA non-coding upstream 277926 12332456 ~ 12334605 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 272106 11778271 ~ 11779251 (-)
G63095 NA other downstream 435432 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 705369 11284354 ~ 11345988 (-)
smim1 smim1,LOC107668050 other downstream 881884 11131670 ~ 11169473 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other downstream 920119 11096140 ~ 11131238 (-)
G63385 NA other upstream 209164 12263694 ~ 12264533 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 287630 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 434667 12489197 ~ 12504153 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 931124 12985654 ~ 13083372 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other upstream 1131337 13185867 ~ 13246130 (-)

Expression


Co-expression Network