G30240


Basic Information

Item Value
gene id G30240
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9702825 ~ 9706274 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU34224
TTGGTGACGATGCAAAAAAAATATTATCCAGTATTTCATTCCAAATCGAACCCTTCCAGTGTACAGCAGCAACCTCTCATATCCTGAATCAACGCACTTCAAATATATACAACAAACCTCTTAAATTAAAACCCATTTCCCTGCTGGAAACTAATTTACATTCCTGTTCGCATCCATATATCTCAGCCTTGTTACACACGCACTCAATGAAGACAATAACAAAGAGTACATGGCAAATCTCAGCATGGTTTTAAAAGCTTTGCAACATCCACCCTCTGAAAGCAGCCGTTGGTAAAGAACATGCCGCAGCTGCTGTTGAATTTAACCTCCCTCCTCATGGGGCTTGTGATGTGCTCTCTGATGGTATTGATTCATACTCTCTGTGAACATCTAAGCAGCCAAAGAGGGACTCCAGAATGTTCAGTACACTGTTTTGGATGGAATCCACTTGTTCTGCTGGGCAATACTCATCCAAACTGGATCGTGATATAGTGACAATGGTGGGCTTGGGCAGAGCTTCCAGGAAGAGCTGCACGGCCGTGATCATTTGCTGGATCTCCTCCTCACTGCTGATGTGGTGAGGGAGTTCAGAGTAATCACAGGTCAGGCCTGCTTGATGTACCTAGACTCAACACCACAGGCACAAATATATCAGTGTGTGGTGCTGGCGACATGCCTCAGCACTACAAAGTAACCAATTGAAACAAATTTGTTATCCCCCATGTTCTGTTTGAAGGCCCTCAATACAGAGTCATACACATTTTCCATTTAAAAATGTCATACTTTTCCAGACTCAAATTTCCAAACCTCTCTAGATTTGTCAGACCATATTTAACATAAATGGTCCATTATATTTGGTATATAGTACAGCAATCTAAGAACATTTTATTTTCTCTGTTTTTTCCATTGATTTTCTCGAAGTGATAAAACATTTTTACCTCTGACACATCATTTTGATACTGCAAGTGGTTTGCCAAACAGCAAAGTTCAGTCTGATTTAGACGATCGTTTGTTCCTTTATTTGTTGCTGGTTTGAATGGCACATCCATATTTGTTCAAAAGAGATTTGCTTATGGCAAAGACAAACAGTTTTGCATAATAAAATTGTGCACCTTGAATTTACTGAGCTGTGTTCAATGATCATTAAACTTTTGCCATGAAAACACTCTGCTTGTATGATAAATTTATAGAAATTTTTATATTTCAGAAAACTGAATAGGGGCAATATTCTGGAAACAAAAATATTTTTTACATGCTTTGTTTTCTTTTGTTCACACCTCGAATTTCTTAAAAAAAAATTCCATAATTTTCCAAACTGCGTAGGAACCCAGCCAATAGCTCAAAAACATATTTAAGTATCAGGCTGATACTTCATTATTTTTTACTCATCACTGCAAAACATTTTTTAATAGGTATTATGTCTCATTTTTCATAAAAAACAATATGTAAACATCTTTGAAACAAGATATACCCAAGATATATTTACTTATTTTTATAAAGTATATCCTGTATGACATTTATTTTTCTTAATGTTTTAGAATAAACCGCACTAATGTTTTTTTTACTTAGTATATTACTTAGCGTTCTGATGTAGAACCCAGAAGCACTGCACTGTGTTTACAACGTCAACAGTGTAGGAGACTGACAGGGAAGAGTATAAGTTGTTGAATAAAGTGAGCCACATTTCTGAAAACTGCATGCGTACTCCACAGTAAAATAGAGGAATAGCATCTGCCAACTGGGTTTCAGTTATGCCAGAGGAACTTATTAAAAGAATATGAAGGTAAAATAAGAGGATACTAATTCTATTTTTCTACATACATCAGTGTAGTCCCTGAAAGCTTAAAAACTATTTGGGATATCTGGACTGACAGACACTTCAAACATGATTAAAACACACACACACACACAGAAACAACTTCACCATTTCATAGTCCGGTGACTGTGTTCGATTCTTAAGACTGTGTACAAGTCTGACAAGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU34224 True 1983 lncRNA 0.37 2 9702825 9706274

Neighbor

gene id symbol gene type direction distance location
CI01000004_09684489_09685469 MC4R coding upstream 16813 9684489 ~ 9686012 (+)
CI01000004_09627968_09635256 RNF152 coding upstream 67024 9627968 ~ 9635801 (+)
CI01000004_09623579_09626179 BUC coding upstream 76224 9623579 ~ 9626601 (+)
CI01000004_09533613_09534019 NA coding upstream 168462 9533241 ~ 9534363 (+)
CI01000004_09526514_09528258 TMEM68 coding upstream 174512 9526514 ~ 9528313 (+)
CI01000004_09980195_09995816 CDH10A coding downstream 273921 9980195 ~ 9995893 (+)
CI01000004_10058538_10090881 CDH12A coding downstream 352264 10058538 ~ 10091049 (+)
CI01000004_10169407_10212947 CDH18 coding downstream 463133 10169407 ~ 10213189 (+)
CI01000004_10376389_10423302 DLGAP1A, DLGAP1 coding downstream 670115 10376389 ~ 10423302 (+)
CI01000004_10434104_10435287 PTF1A coding downstream 725559 10431833 ~ 10435569 (+)
G30243 NA non-coding upstream 22016 9680586 ~ 9680809 (+)
G30190 NA non-coding upstream 85558 9616647 ~ 9617267 (+)
G30196 NA non-coding upstream 86637 9615757 ~ 9616188 (+)
G30177 NA non-coding upstream 276478 9426115 ~ 9426347 (+)
G30172 NA non-coding upstream 278980 9423645 ~ 9423845 (+)
G30395 NA non-coding downstream 53545 9759819 ~ 9763294 (+)
G30447 NA non-coding downstream 109537 9815811 ~ 9816085 (+)
G30505 NA non-coding downstream 183255 9889529 ~ 9889756 (+)
G30515 NA non-coding downstream 199964 9906238 ~ 9906546 (+)
G30681 NA non-coding downstream 502192 10208466 ~ 10344978 (+)
CI01000004_08976512_08980033 TTPA other upstream 721841 8976254 ~ 8980984 (+)
G28859 NA other upstream 1103222 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 1251598 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 2046442 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 3128404 6570771 ~ 6572667 (+)
G30797 NA other downstream 791102 10497376 ~ 10497788 (+)
G31710 NA other downstream 1930977 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 1958499 11666900 ~ 11667659 (+)
G31865 NA other downstream 2485856 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 2936480 12646838 ~ 12652570 (+)

Expression


Co-expression Network