G30395


Basic Information

Item Value
gene id G30395
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 9759819 ~ 9763294 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU34391
AATATGGTTGAGATCGTAAATATATCAATGACAGTGATGATGGTAAAAAGCATCTGCACAAATTGAACCCTACCAAGTTCTAAAAGGTAAGGAAATATACTTTATTTTACTCTTTTGTAATTGTTTTTAAAATATCCAGAGAGTTTTTATACTATTGCGGCAGTTACAGATCCATCTGTGTTCAGAGAACAATTGGCAAAACATTCAAGCATTTAAGGGTTAAGGAATGAAGCAACTGCCCTCTCTGCAGACCACAATAGGCCTAGACTGACCTAAAGTTATGGCTACTGCAGAACGAGCTGGCTCAGTTTAAACAGCTAGATGTGAAGAGGCCATGTGTCCTAAAGATTTCTCCTGATTGATTGGTCTGTGTTGTCATGAGGAGAGACAGTAAGCTAGTTAGAGGGCCAGACAATGTGAGAGGCCACCCACCTCCATTATCTCGGACTGAGAAGTTTGCTCGCACTGAGCTCTCTGGTGCTAGGGAGAACAAGAAGCGATGTCCACCAACTGGGTCATCTGGATCCACCGCACTTATTGTCTGGATTTTCTGACCGGCTTTGGCGTTTTCACAGACGAAGGTCTCGTAGAAGGATGCCAGCATGGGGGGGTTATCGTTGACATCCAGTACGCGGATGTACACAGGCACTCGGCTGGTCTGCTCGGGGTTGTCTAAGTGTCTAAACTCGGTTGCGATCACTGATATGTTGTGCCAAGCGAATTCCTCTCGGTCCAGAGGCCTCTGCAGGAATATAGATCCATTCCCAGCATAGACACCAAAAACTCTGTCCACATCTGTGTGCCGATCAATGGAATACCTGCAATACAAACCATTCAGCTCAATTGTCAACAGTTCCAATGTGTTTGCAACAGTGTTCTTGTGTAGAATAGTGTTAAACTATGACGTGACCTGTGACAAACCCGTTTGGCTCAGTTATGCTCAGAGAAAATGGAGTGTGAAAATCATTAAAAATTCAGGGAAAAAATGCAAGTCTGTTTTGTCAGTGTTGTCATAATCATTGTTTTGTAGGGAAGAATAATCAAATCCCAACTCCTCCTATACATTATCCCTTTAATTCTCATTTGTAGCATTAGAAAGTTTAATTCATTCCAGTGAATCAGTAAATGAAACGATTCTATTGAAGTGATGGAATAGCTGATTTTAGTTCCTGTGTAAAGTAAATTCCTCGAGGATTCGTTCACTTTAAAATGAAAATTACCCTCAAGCCATCCTAGGTGTATATGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU34391 True 1247 lncRNA 0.47 3 9759819 9763294

Neighbor

gene id symbol gene type direction distance location
CI01000004_09684489_09685469 MC4R coding upstream 73807 9684489 ~ 9686012 (+)
CI01000004_09627968_09635256 RNF152 coding upstream 124018 9627968 ~ 9635801 (+)
CI01000004_09623579_09626179 BUC coding upstream 133218 9623579 ~ 9626601 (+)
CI01000004_09533613_09534019 NA coding upstream 225456 9533241 ~ 9534363 (+)
CI01000004_09526514_09528258 TMEM68 coding upstream 231506 9526514 ~ 9528313 (+)
CI01000004_09980195_09995816 CDH10A coding downstream 216901 9980195 ~ 9995893 (+)
CI01000004_10058538_10090881 CDH12A coding downstream 295244 10058538 ~ 10091049 (+)
CI01000004_10169407_10212947 CDH18 coding downstream 406113 10169407 ~ 10213189 (+)
CI01000004_10376389_10423302 DLGAP1A, DLGAP1 coding downstream 613095 10376389 ~ 10423302 (+)
CI01000004_10434104_10435287 PTF1A coding downstream 668539 10431833 ~ 10435569 (+)
G30240 NA non-coding upstream 53545 9702825 ~ 9706274 (+)
G30243 NA non-coding upstream 79010 9680586 ~ 9680809 (+)
G30190 NA non-coding upstream 142552 9616647 ~ 9617267 (+)
G30196 NA non-coding upstream 143631 9615757 ~ 9616188 (+)
G30177 NA non-coding upstream 333472 9426115 ~ 9426347 (+)
G30447 NA non-coding downstream 52517 9815811 ~ 9816085 (+)
G30505 NA non-coding downstream 126235 9889529 ~ 9889756 (+)
G30515 NA non-coding downstream 142944 9906238 ~ 9906546 (+)
G30681 NA non-coding downstream 445172 10208466 ~ 10344978 (+)
CI01000004_08976512_08980033 TTPA other upstream 778835 8976254 ~ 8980984 (+)
G28859 NA other upstream 1160216 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 1308592 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 2103436 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 3185398 6570771 ~ 6572667 (+)
G30797 NA other downstream 734082 10497376 ~ 10497788 (+)
G31710 NA other downstream 1873957 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 1901479 11666900 ~ 11667659 (+)
G31865 NA other downstream 2428836 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 2879460 12646838 ~ 12652570 (+)

Expression


Co-expression Network