dclre1b (LOC107731274,LOC107668110,LOC107550475,LOC107712006,LOC107678930)


Basic Information

Item Value
gene id dclre1b
gene name LOC107731274,LOC107668110,LOC107550475,LOC107712006,LOC107678930
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11970741 ~ 11974829 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246465.1
TCGTGCGCGGCATGTAGGCGTGGACGGTAAACGTAGTTTTTGGCGGACAAACCAGCCGCTAATGCCTGAGCTCAGTAGTGCCTTTGAAAGCGCGCCgaaatcttttgcatttgtAAACATACCGCGAGCCTCGTTTCAGCATGGCGCCCATCTGCACAAATACACAAGTTCGGCGAACCGGCCTGCTAACCACACGCTCGGATGAACCGTGACTGATCCCATTAAGAATAAGCGGTGGGCACCGCCTGAACTCTTCACAGCAGCACAAAATGAACGGAAAAGTCCTACCAGACACTCCAATAGCCGTAGACTGCTGGCAGCTCCGCAAGTGCCATCACGTCCGTCTGTTCTTCTTGTCTCACATGCACGCGGATCACACCTCTGGCCTGTCATCCACCTGGAGCCACAGGCCCATATACTGCTCTCCTCTCACTGCCAAACTGCTCCAGCGTAAACTCAAGGTCAAAGAGAAATGGATTCGTCCTTTGGAGATTGGGGAAGCTCACATGCTATTGCTTGATGATCTTGGAAAAGAGCGTCTGACCGTTACTCTAATAGATGCCAATCATTGTCCTGGAGCGGTCATGTTTCTCTTTGAGGGATACTTTGGCACCAGACTCTACACTGGTGATTTCCGTTACACCCCATCTATGCTCAGAGAGCAATGTCTGAGGAACACCACTACCATTGACGTGCTGTATCTGGACAACACCAACTGTGACCCCACTCGTGCCGTTCCTTCTCGTCAACGAGCCACTCAGCAAATTAAAGAGATCATTAGGGCTCATCCTGGGTTTGCTGTGGTCATTGGTCTTTACTCTCTGGGTAAAGAGTCTCTGTTGGTGGAACTGGCTATGGAGTTTAAAACATGGGTGGAGGTGGATGGAGAGCATTTGGAGACCTTGCGTGTTCTGGAGCTCCCTGACATTTTCACCACTGACTCTGGTGCTGGCCGCATTCGTGTGGTCTCTCAGTCAATGATCAACGCCTCCAACCTGCAGGCGTGGAATAAAGTGCAGCCCACCATCGCAATATTGCCCACCAGCCGCCCCATGATCTCTTGTCACTCTAATGTGTATGTGGTGCCTTACTCAGATCATTCTTCCTACCAGGAGCTGGAGGACTTTGTGTCGGCCCTGCGTCCCATCTCATTGGTTCCCATCGTGGGCAACTGCCTGCcttatttttcttctcttctaaACCCCTGCAAGAAAAAGCCCAAAGAGGTAGTTATTCCGGAGTCAGTCAAGCACTACATGATGACAAATTCTAATATCCAGACCTTTACAAATGGCATTACAAACATGCTTCAAAGAACCTCGCGGCCATATTCTCGCGGGGTGGTGTTTGAATCTCCAGAGTCAAAAATAAGCCGACTTGATGGGGATGATGGGGATTCTGAGACAGATCAAGACTCCTGCGTTCTTCTAGACATGAGCACCAACTCCTACCCTCGAGAGAACGGCCCTCACAACAAACGTAGGAAACTCAGCCAAATTGCATCAGATGTCATCACAATTGGCAGCAGCCTTCCTTCAGATGACAATGACTCTATTAGTGCACTTACAGATGTAAGATCACCTGAGCACAGCTCAGTGTGCGAATGTGGACATGAAAGAACAACCAAGTCCTCCAAGGAGAAGAGTCCTCAAATGGGCAGCAGCAGTTTTAGAGAAAGGTGCTCTTCACTGGACAGCATCAGTATTCACGACCAAACCTGTATTACCACTGTGCTCACACCCACAGAAACACGATCGGTGACCGCTGCCTTGACCTTCATATTACAGCGAGAACAGATTGAGCATCTGCTCCTTGAGAACTTCATTATACCCGCTGAACAATTTAAAGGTGAGCAGATGTTGTGCGGAGTTCAAGAAGAGTTTCGCCTTACTCCGGTTGATCTTCCCAAACCAGCTGGTGATCCTCTTGAAGCAgctataaaaacattcaaatctaAATGCGATTCAGCAAGCACTTAAAGTGTGTGGCATGTTtatgtgaaggtttaattatcATGCATCACTGTAATTTAGATGTGAACAGTATTGTGGTTAAATCTATAGATCGACACTGTGCCAAGTACTTAttctttttctgcatttctttTGAGCCAAAAAGCGTTGATGTTATTGGAAATACTGATGGAATAATTTCACAATGTGGATGTTGAGGTTCAACATGTTTAGCATGAATTTATTATCATGTAGAATCAAAAAGCACCTTACtatgtaaatttgtttttagATAAACCCTACTAAATGTG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0031848 protection from non-homologous end joining at telomere biological_process
GO:0031860 telomeric 3' overhang formation biological_process
GO:0031627 telomeric loop formation biological_process
GO:0006281 DNA repair biological_process
GO:0000781 chromosome, telomeric region cellular_component
GO:0005813 centrosome cellular_component
GO:0005634 nucleus cellular_component
GO:0008409 5'-3' exonuclease activity molecular_function

KEGG:

id description
K15341 DCLRE1B, SNM1B; DNA cross-link repair 1B protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246465.1 True 2263 mRNA 0.47 5 11970741 11974829

Neighbor

gene id symbol gene type direction distance location
lhfpl5b lhfpl5b,LOC107591869,LOC107745833,LOC107731128 coding downstream 79458 11883738 ~ 11891283 (-)
c8h1orf194 LOC107731283,LOC107668109,LOC107549965 coding downstream 127889 11841181 ~ 11842852 (-)
zgc:195245 zgc:195245,LOC107668117,LOC107549966,LOC107731284 coding downstream 130140 11838293 ~ 11840601 (-)
inavaa si:ch211-163l21.4,LOC107731290,LOC107745811,LOC107678807,LOC107667997 coding downstream 133351 11828122 ~ 11837390 (-)
LOC122350200 LOC107731172,LOC107668058,LOC107549973 coding downstream 169087 11797768 ~ 11801654 (-)
adora1b adora1b,LOC107550463,LOC107711940,LOC107668012,LOC107591868,LOC107731293,LOC107680252 coding upstream 2371 11977200 ~ 11983309 (-)
zgc:110353 zgc:110353,LOC107680259,LOC107711939,LOC107591867,LOC107668023,LOC107731165,LOC107550464,LOC107711928 coding upstream 35659 12010488 ~ 12013150 (-)
rbm15 rbm15,LOC107731203,LOC107680058 coding upstream 103410 12078239 ~ 12083038 (-)
alx3 alx3,LOC107680275,LOC107711935,LOC107731154,LOC107591866,LOC107668019 coding upstream 111090 12085919 ~ 12091662 (-)
kcnc4 kcnc4,LOC107731196,LOC107668031,LOC107711934,LOC107679013,LOC107591816 coding upstream 175158 12149987 ~ 12168140 (-)
G63304 LOC107549947,LOC107731153,LOC107668018,LOC107591857,LOC107745734 non-coding downstream 114679 11855745 ~ 11856062 (-)
G63254 LOC106565120 non-coding downstream 147497 11821284 ~ 11823244 (-)
G63134 si:dkey-16n15.6,LOC107667993,LOC107549944,LOC108442380,LOC105898899 non-coding downstream 303261 11667166 ~ 11667480 (-)
G63127 NA non-coding downstream 305967 11663435 ~ 11664774 (-)
G63120 NA non-coding downstream 318837 11648509 ~ 11651904 (-)
G63344 NA non-coding upstream 41897 12016726 ~ 12017351 (-)
G63347 NA non-coding upstream 44882 12019711 ~ 12019953 (-)
G63350 NA non-coding upstream 47686 12022515 ~ 12022753 (-)
G63321 NA non-coding upstream 129749 12104578 ~ 12139398 (-)
G63316 slc6a17,LOC107668054,LOC107731213,LOC107712000,LOC107678997 non-coding upstream 156662 12131491 ~ 12134728 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 191490 11778271 ~ 11779251 (-)
G63095 NA other downstream 354816 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 624753 11284354 ~ 11345988 (-)
smim1 smim1,LOC107668050 other downstream 801268 11131670 ~ 11169473 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other downstream 839503 11096140 ~ 11131238 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 76528 12051357 ~ 12054530 (-)
G63385 NA other upstream 288865 12263694 ~ 12264533 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 367331 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 514368 12489197 ~ 12504153 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 1010825 12985654 ~ 13083372 (-)

Expression


Co-expression Network