opn7c (opn7c,LOC107711973,LOC107707675,LOC107550512)


Basic Information

Item Value
gene id opn7c
gene name opn7c,LOC107711973,LOC107707675,LOC107550512
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12566263 ~ 12574233 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246517.1
TgtgctttgtctttttttcgAAAAAACCTCATCATCACATTTGTGTGGTAGAGGTCAGTGTTGCAAAACTAAAAGCTTTGAAAGCGTAAGGATAAGAGGAAGCATTAATAATGATACACGTAGGGGAAAAGAAATTGATCAATAACACAAGctacatatttcatttttcatatatatattcatatatatctttttcatatattcattattCACATATTTCATTATACTGTTGTTCTTATTAAGAGAAGTGGGTATTCAGGTtcatcatctaaaaaaaaaaaatctctcttgctcttttcaattcaaaaaaAGATAGAAATTGTCAGGAGAGGTTAAGTGAGGAGAGGTTGGGGCCATTGTAGGCATCTGACTTTGAGTTAATAAATGACATGGCAGAAGGGGATATGCATTTTTACAGAATTGGAATCTATGTGTTTAGGGTTTAAAAGCAGTTGGCAGAGTCAATTCAAAATGAGCTGTCTGCTTTAATACATCAAGGACCCTGGCCAGcgagaaagaaaatgtataaggTGAAAATGTTGAGACAAAAACGGTTGAAAGCAAAATCCAGCTGGGCTTTTAGTGTGGGGATAAATGAACCCAAACCGAAGTGGCCTGTTGTCTGGAGCTTTGCACCAGAGAAACAAATTGAAAACTGATTATGGAGAAAATGAGGAACACTATTgtcattttaggttttatttaaaacatgttcttctctctcttaaaaggtttttcattGGCATCTTACTGAAACACTgaacactgattttttttatgtacttctttttttttcttttttacaaacaataaaaataacagctactatattataattatattagcCACAACCAAACAATAACTTAGTTTTGTAATAGTATAAAGTAgttttacaaaacaatataattatcACGTGTCACACATAGTTGTATAAAATACACctgctaaaagaaaaaaacccacaattGTTCATAAAGCCCAAATCAACAGGTTTAATTACCAGCCGGGTCTGTCTCACTGACCAAGCACAGTATGAATGAACACACAGCTGACTGGTCAAACTGTTCAACCAGAACCAAATAACTCACTGATTAATACTGGAAATTTGCCTGCTACACTGAAAGGTCTAAATTTAGCCAAATGTTAATGGATTGAAGTGTTCACAGATCTGTCAGAATTAGGGAGAAGTACGTCAAGACGAGACTAAGTGAGAGGAGGAAAGCACCTCATCAGATTCAGGTGTCACTTTTCAACTTTTCCAGGAAAAACATGAATTAGAATGCGAGACATCTCAGAGAAACCTTTAGATCCAAACACTTTAAGAAGTTTGTAACTCAGACCATTTTAAAGTTTGAGTAAAACgctgaaaacagttttgaagGACTTTTGTGTTGCAAGCAAGCAAAAAGTCATACAAGTTCACAATCTAAAGCCAGTGCATCAGAGAACAGTCAAGAGATGCATGTGAAGTTCTGTTTGAGACTGTATCTGACAAGTTCTGTTTCTTCCCCACAGATGGGCAATGTGTCAAAAACCGCCCTGTTTGTATCCACAATCTCCAGACAGCATGACATCCTCATGGGATCGctttattcagtgttttGTGTCTTGTCGCTCCTGGGAAATGGCATGCTGTTGTTTGTAGCCTACCGTAAGAGGTCATCTCTGAAGCCCGCAGAGTTTTTCGTCGTGAATTTGTCTGTGAGTGATCTAGGGATGACCCTGTCTCTGTTTCCTCTGGCCATCCCATCTGCTCTAGCACACAGGTGGTTGTTTGGGGAGGTAGTGTGTCTCTGCTATGCTGTGTGTGGGGTTTTGTTTGGCTTATGCAGCTTAACAAACCTGACTGCTTTGTCGTCAGTATGCTGTCTCAAAGTCTGCTTACCAAATTATGGTAACAAATTCTCATCCAGCCATGCTTGCGCGATGGTGGTTGGGGTTTGGTGTTACTCGTTGGTCTTTGCTGTGGGACCTTTGGCCCACTGGGGAGGTTTTGGACCAGAACCGTACGGAACCGCCTGTTGCATAAACTGGTACGCTCCATCCCATGATGCCCTTGCCATGTCTTACATCATCAGTCTCTTTATCTTTTGTTATGTTGTTCCCTGTACCATCATCATCCTCTCTTACACCTTCATCCTGCTCACAGTGAGGGGGTCTCGCCAAGCCGTTCAACAGCACATCTCACCACAAACCAAAGTGACCAACGCACATACTCTTATTGTCAAGCTCTCAGTGGCTGTGTGCATTGGCTTCCTTACGGCTTGGAGCCCGTATGCCATTGTTGCCATGTGGGCTGCGTTCAGCGCCAATGAGCAGGTCCCACCCACAGCCTTTGCGCTGGCAGCCATCCTGGCCAAATCTTCCACCATCTACAACCCTATGGTTTATCTTCTCTTCAAACCCAACTTTCGCAAGTCACTGAGTAAGGATACTCAAACCATCCGCCACAGGATTTGTTTGAGTCATAGTAAGGCCAGTCCCACATCAGGAGTAAAGGACCGGCAGGTGCAGAACTTTCAGCAGTGCTGCAATAATAAGGATGCCAGCACCTCCACCCCCTTTTCCAGTGGACAGGCAGAGAGTTATGGAGCATGTCATGTCTATGCAGAAGCAGAGCCACATCTTCAGCATGCAAGTCCCCAGAGAACTGCACGTATTCTGGAGGGCAACGTTCAGAGTGAAATTCCAGTGAGACAACTGActgataaaatgcaaaatgaccTCCTGTGAGagatactcaaaaaaaaaagaaacaatgcatgaaatgtaaaaaaagtgagGATGATGTAGCTTAGATACCCAAACAAGGACAAAAAAATGAGAACTTCCTGAAGATTTCACCAATGTTTACTGAACCAAATCGAGAAAGCATATTTCCTTAAATCAAGGGTTGTCGGTTCACCACGcttttttggttgttttctaacatgcattaaatgcataatgtattCTGTGTCAACCGCCTCCATTTGTTTGActcaaaagcaacaaaatatgGCATGTGAATCATTATTTGgtgaataaagataaataaacgA
>XM_043246518.1
AGACATTATCATACATACCAACCGTTAATAGCATGAGAAGGAGGAAAAAACGAGAGGAAAATGTGTCTGTGAGGAAATGTGAGGAAAATTGGTGTATTTCAGTGAAGTATCAAAAAAATCAGACAGatagagacaaagagagaaagtgtCTAGCCATAAAATGGGAGTGGGGAGGAGGGTCAAAAACAAGGAGACAGGGAAAATACACAAGAAGagcagagcgagagagagagagaaggagagggatGGAGAGAAAAAGCGAGAGGACCAGTAGCAGAGAGTGTGTGCTTTCTAAGCAGCATCCGACGTCAGTACTGTGGCTTTCTGACTCTGAGTCTGTTTGGATTATGTCAGTCCTTCACATGAAGAATCAGTTGTAGAGTTGCTTACTGTCAAAGTGGACTGACCGCCATCCGCCTGCTCATCCTCCTGCACTGACTGCCAGAGCACAGGCTCAATTTGaggatattattttttatgtttttcagtgtCTATCTGTCATGATCTGTCATtcattctgtttgtgtgtgtgagttttcCCATACTTTGGATTCTACCTGGACTCCATGTGGGTAGTCAAGACCACACTCTCCCCTGGAAGATGGGCAATGTGTCAAAAACCGCCCTGTTTGTATCCACAATCTCCAGACAGCATGACATCCTCATGGGATCGctttattcagtgttttGTGTCTTGTCGCTCCTGGGAAATGGCATGCTGTTGTTTGTAGCCTACCGTAAGAGGTCATCTCTGAAGCCCGCAGAGTTTTTCGTCGTGAATTTGTCTGTGAGTGATCTAGGGATGACCCTGTCTCTGTTTCCTCTGGCCATCCCATCTGCTCTAGCACACAGGTGGTTGTTTGGGGAGGTAGTGTGTCTCTGCTATGCTGTGTGTGGGGTTTTGTTTGGCTTATGCAGCTTAACAAACCTGACTGCTTTGTCGTCAGTATGCTGTCTCAAAGTCTGCTTACCAAATTATGGTAACAAATTCTCATCCAGCCATGCTTGCGCGATGGTGGTTGGGGTTTGGTGTTACTCGTTGGTCTTTGCTGTGGGACCTTTGGCCCACTGGGGAGGTTTTGGACCAGAACCGTACGGAACCGCCTGTTGCATAAACTGGTACGCTCCATCCCATGATGCCCTTGCCATGTCTTACATCATCAGTCTCTTTATCTTTTGTTATGTTGTTCCCTGTACCATCATCATCCTCTCTTACACCTTCATCCTGCTCACAGTGAGGGGGTCTCGCCAAGCCGTTCAACAGCACATCTCACCACAAACCAAAGTGACCAACGCACATACTCTTATTGTCAAGCTCTCAGTGGCTGTGTGCATTGGCTTCCTTACGGCTTGGAGCCCGTATGCCATTGTTGCCATGTGGGCTGCGTTCAGCGCCAATGAGCAGGTCCCACCCACAGCCTTTGCGCTGGCAGCCATCCTGGCCAAATCTTCCACCATCTACAACCCTATGGTTTATCTTCTCTTCAAACCCAACTTTCGCAAGTCACTGAGTAAGGATACTCAAACCATCCGCCACAGGATTTGTTTGAGTCATAGTAAGGCCAGTCCCACATCAGGAGTAAAGGACCGGCAGGTGCAGAACTTTCAGCAGTGCTGCAATAATAAGGATGCCAGCACCTCCACCCCCTTTTCCAGTGGACAGGCAGAGAGTTATGGAGCATGTCATGTCTATGCAGAAGCAGAGCCACATCTTCAGCATGCAAGTCCCCAGAGAACTGCACGTATTCTGGAGGGCAACGTTCAGAGTGAAATTCCAGTGAGACAACTGActgataaaatgcaaaatgaccTCCTGTGAGagatactcaaaaaaaaaagaaacaatgcatgaaatgtaaaaaaagtgagGATGATGTAGCTTAGATACCCAAACAAGGACAAAAAAATGAGAACTTCCTGAAGATTTCACCAATGTTTACTGAACCAAATCGAGAAAGCATATTTCCTTAAATCAAGGGTTGTCGGTTCACCACGcttttttggttgttttctaacatgcattaaatgcataatgtattCTGTGTCAACCGCCTCCATTTGTTTGActcaaaagcaacaaaatatgGCATGTGAATCATTATTTGgtgaataaagataaataaacgA

Function

symbol description
opn7c Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; heart; integument; and testis.

NR:

description
PREDICTED: opsin-5-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246517.1 True 3041 mRNA 0.40 6 12566263 12572711
XM_043246518.1 False 2127 mRNA 0.46 7 12566263 12574233

Neighbor

gene id symbol gene type direction distance location
efhd2 efhd2,LOC107591793,LOC107711975,LOC107550510,LOC107707677 coding downstream 4797 12544391 ~ 12561466 (-)
taf10 taf10,LOC107679390,LOC107591795,LOC107711978,LOC107550511,LOC107707678,LOC106572212 coding downstream 22360 12541668 ~ 12543903 (-)
suv39h1b suv39h1,suv39h1b,LOC107550505,LOC107679310,LOC107591797,LOC107669636,LOC108265881,LOC108442234 coding downstream 48622 12511451 ~ 12517641 (-)
tspy LOC107550504,LOC107731226,LOC107711967,LOC107679295,LOC107591801 coding downstream 77223 12484451 ~ 12489040 (-)
sema3ga sema3ga,LOC107731285,LOC107550503,LOC107669661,LOC107591802,LOC107711922,LOC108442245,LOC108265594 coding downstream 87571 12463037 ~ 12478692 (-)
si:dkey-72l14.3 si:dkey-72l14.3,LOC107679458,LOC107711968,LOC107591777,LOC107669647 coding upstream 46859 12621092 ~ 12623350 (-)
LOC122350402 LOC107556499,LOC107669622,LOC107717519,LOC107679589,LOC107711962,LOC108190967 coding upstream 157981 12732214 ~ 12735194 (-)
si:dkey-20d21.12 NA coding upstream 229694 12803927 ~ 12806602 (-)
sema3b LOC107717529,LOC107556489,LOC107669651,LOC107591772,LOC107711952 coding upstream 316241 12890474 ~ 12919391 (-)
tmem51a tmem51a,LOC107717531,LOC107669600,LOC107556479,LOC107679674,LOC107711951,LOC107591770 coding upstream 368457 12942690 ~ 12948591 (-)
G63490 NA non-coding downstream 74381 12490277 ~ 12491882 (-)
G63486 NA non-coding downstream 107406 12456048 ~ 12458857 (-)
G63408 NA non-coding downstream 229069 12336876 ~ 12337194 (-)
G63407 NA non-coding downstream 229440 12336114 ~ 12336823 (-)
G63406 NA non-coding downstream 230242 12335766 ~ 12336021 (-)
G63578 NA non-coding upstream 74409 12648642 ~ 12649214 (-)
G63579 LOC107679480,LOC107711917,LOC107669654,LOC107556492,LOC107717512,LOC107591779 non-coding upstream 76050 12650283 ~ 12652814 (-)
G63581 NA non-coding upstream 80854 12655087 ~ 12657144 (-)
G63585 NA non-coding upstream 90072 12664305 ~ 12670577 (-)
G63588 NA non-coding upstream 97111 12671344 ~ 12672857 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other downstream 62110 12489197 ~ 12504153 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other downstream 203159 12342160 ~ 12363104 (-)
G63385 NA other downstream 301730 12263694 ~ 12264533 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 511733 12051357 ~ 12054530 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 787012 11778271 ~ 11779251 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 411421 12985654 ~ 13083372 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other upstream 611634 13185867 ~ 13246130 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other upstream 1142395 13716628 ~ 13720514 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other upstream 1235195 13809428 ~ 13863250 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other upstream 1811367 14385600 ~ 14455243 (-)

Expression


Co-expression Network