gpr173 (gpr173,LOC107731146,LOC107678674,LOC107549585,LOC107549979,LOC107745752)


Basic Information

Item Value
gene id gpr173
gene name gpr173,LOC107731146,LOC107678674,LOC107549585,LOC107549979,LOC107745752
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11675274 ~ 11683625 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246525.1
TCCGATCCAGAGAAAACCGAGGTAGAGCGCAGAGACGGGAGCCGCTGTTTCCAATTCACCATCGCAGAAGAACCCATTTCATTTCGTTCGTTTTCCGTTAGCATTCTCGATTCAGCGACGACACTGGGATTCTGACAGTCATTGCGAATTCCCGAGCAAAGAGTCAGGTCTGACTGTCATGTGTGATCCATCTTTTTTGCGCCTTGCATCGCAGACCGTACCAGgcttgtgcattttaaatatatagggCGCTTACATGTACTGTGTACATGTCTCCGCGTAGAATGACTACAGTATGTGAGAGGACGACGCTGATGCCAATGGATATTCCGAGGGATGATGCGTGAAAAAGCGGATTTATTCCCGTCGAAGATAAGATGTGTATCGGTGTGGCGTGGGAGAAAATGTATTTGGCTCCAGCTAGAAAATGAAGATGGGAAGAAGCGCCTTGTCCTGTAGCCCAGCGGCGAGAGCCAGTCGTTATTTACACGTCTAAATCTGCGCACAAGATAATGATACTGACGCTGTGTCTCAGGATTAAACGATACcacaaaacacagcagaaataGTGTAATTGTGCTATTAAACTCTGCTTGATTTAGACACCGTGTGATGGGAATATACTGCTAAGGCTTGGCCTAGCTTTATGGAAAACCCGAAGACATGACATGCACACGAAAAAAGAGGAAAcgatattttttggtttttaaaaccCGTATGTGTGTAATATTCCAGCTTCTGGCATAATATTGTTTCAGCCGTTCAGCAAAGGACTTTCCAGTGAAACAgatattgtttctgtttttttcagacGTGACCATTCCctgtattaattaattcattaattattttttttttcattctctgtTGTTCATAAAGGACGTCGAGGTTCATCTTGGATTACAATTTGGATTCATGTGCGATTCCTTGAACGCGTTGTGTCGGGTCGAAAAAAACGcatttgcacctttttgtgtgtgtttttattttttatttatttttattttttcatatatttgcaACAAGCTCCCGTTAAGGCCTACCATCGAGTCAAGATCCATTGTCTGGAGGAAGATCGAGAATTATAGGTGTGGAGGCCAGAAGAGGTGGTACATTTGAAGGGAGGCATCCGAAGAGAACTGTACAAAAATGGGGCAATGCAGATCAAGCTTCTCTCCTTCCATTTGAGACAACAACGAAAGGCAACCACGAGGACGGACGACAGCTCAGCCGGAGGAGGCGGAGGTGGAGGAGGGAGTGGAGGAAGCGAGGGTAAAGGAGGAGTTGAAGGAGGAGGAGTGCGATTTGAGCAGCAAAAGGTATGGCCAACGGAAACGCAAGCAGCGATGGGCCTGGGAACCCCTTGGCGGCCGTGGTGTCCACAACTGGTGGTGTAATGGGTGGAGCACCTTCCTCGGCCGTGTCTACCTATGTTAAACTTGTCCTTCTGGGTCTGATCATCTGCATCAGCCTGGTGGGCAATTTAGTGGTATCCCTGCTAGTGTTACGGGACAGAGCCCTACACAAGGCACCCTACTACTTTCTTCTGGACCTCTGCCTCGCCGACACCATCCGCTCGGCGGTCTGCTTTCCCTTTGTCCTGGTGTCCATCAAGAACGGCTCGGCCTGGACTTACAGCGTGCTCAGCTGCAAGGTGGTGGCCTTCATGGCCGTCCTTTTTTGCTTCCATGCTGCCTTCATGCTGTTCTGCATTAGCGTCACACGCTACATGGCCATCGCCCACCACCGCTTCTACTCCAAGCGAATGACCTTCTGGACGTGCGTGGCGGTGGTGTGCATGGTGTGGACCCTCTCAGTCGCCATGGCCTTCCCACCAGTCTTTGACGTCGGCACCTACAAGTTCATCCGTGAGGAGGACCAGTGCATCTTTGAACATCGCTACTTCAAAGCCAATGACACGCTAGGCTTCATGCTAATGCTGGCTGTGCTGATCCTGGCCACTCACGTGGTCTACATGAAGCTTCTGCTATTCGAATACAAGCACCGAAAGATGAAGCCGGTCCAGATGGTTCCAGCCATCAGCCAAAACTGGACCTTTCACGGACCTGGAGCCACAGGCCAGGCAGCCGCAAACTGGATAGCAGGGTTCGGCCGTGGCCCGATGCCCCCCACTTTATTGGGCATCAGGCAGAACTTGCACAACCAGAACAGACGCCTGCTAGGCATGGAGGAGTTTAAGGCAGAGAAGCAGCTTGGCAGGATGTTCTATGTCATCACCTTGTTTTTTCTGGTGCTCTGGTCCCCGTACATTGTGGCCTGTTACTGGCGGGTCTTTGTGAAGGCGTGCACCATCCCGCACCGGTATCTTTCCACCACCGTGTGGATGAGTTTCGCCCAAGCAGGCGTGAACCCCATCATCTGCTTTTTCCTCAACAAGGACCTGAAGAAGGGCCTGCTGGCCCACCTGCCTCCCTGCTGTAGAACTCCACCTCAACTGCCCCGTGAGCCTTACTGTGTCATGTGAAGATGAGTGTTCATTCAtaatgttttggggtttttttctttctcttctggaTGGTCGGAGAATGGACAGCCAGGGGGAGGGAATAAGAAGGCTTTAAAGATGGAGATACGAATGAACTTTAAGAGCTGTTGTGGCCTTTGATTCAGTTTAAGATGCTTTAAAAGGGTGGATGTCATGGAATAAGCATCTACTGTCACCTTAATGATTTTAAGGGGGAAATGGGCTCTACGCTAATGTGTGGTTTGGTATATCAACTCTAAACTGGTTTGAAGAACCGTATGTTTTGCGCTAGAATGGTATAAATCAACCAAACTGGTGGTCTATTTTATGGTGAATGTATGAAGGCTATTTTAAATGGCTTCTCATGATCGATCTCTGCAAACATTACCATTTGGTTTGGCTCAGTATCTGTATCCCTTTACCAGGATCCTGAGGGCCTCGAATCaaagatttactaaaatattgttCATGCCTTGTGAACAGTTGCACTCCTGGCAgagtaatttatattatttgaacTACTGATTCAAAAATACtctatgtgcatgtgtattaCCTTATCTTTAAGGGGAAACAAACTTgagattaaactatttttaagaatgAGTGCCAAGCATAAGCCTCAAGGAATGAATGAGgctgacaagaaaaaaaaaaagagagagagacaaagttCCTAAAATTATGCTAATTGGTTGGGCTGAATCATTCCTGTGGCTTCATCAGGCAGGAATTAAGATGCTCATGAAAACAGTGTGTATACAAAGGCAACTTCCAGAACAAATGATGTTTTCCTCTCAAGTTGATTCAAAGGGATTGTAGATGAAAGGAGCTGACTGAAAATATGAATCTGGGAGAAATATGGCCTATTTGGGTTTGTAGGCGCCCTTTCCCTAAGcaacatgtaatttattgtttgtttgtttttatctctttctctctctcccaactctatttaatttataaaatattttctagcATTGCA

Function

symbol description
gpr173 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including digestive system; heart; integument; nervous system; and pleuroperitoneal region. Orthologous to human GPR173 (G protein-coupled receptor 173).

NR:

description
putative G-protein coupled receptor 173

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04300 SREB3, GPR173; super conserved receptor expressed in brain 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246525.1 True 3470 mRNA 0.46 2 11675274 11683625

Neighbor

gene id symbol gene type direction distance location
nol4la nol4la,LOC107549982,LOC107731219,LOC107745834,LOC107680239,LOC107550513,LOC107668103,LOC108412512,LOC103039117 coding downstream 60003 11579162 ~ 11615271 (-)
ptk6a ptk6,LOC107731218,LOC107668051 coding downstream 100061 11569548 ~ 11575213 (-)
si:dkey-70p6.1 LOC107731205,LOC107668067,LOC107745762,LOC107549481,LOC107549992 coding downstream 171242 11481644 ~ 11504032 (-)
emilin3a LOC107668027,LOC107731182,LOC107549958,LOC107550125,LOC107695222,LOC107745820 coding downstream 223828 11445273 ~ 11451446 (-)
magixa magixa,LOC107731248,LOC107668068,LOC107549995,LOC107695301 coding downstream 282603 11351304 ~ 11392671 (-)
wasb LOC107731288,LOC107668059,LOC107745750,LOC107549977,LOC107678704,LOC107549603 coding upstream 59514 11743139 ~ 11747881 (-)
slc38a5b slc38a5b,slc38a5,LOC107668060,LOC107549975,LOC107731265,LOC107745748,LOC107678718,LOC107549617 coding upstream 65971 11749596 ~ 11764650 (-)
trnaf-gaa_1 NA coding upstream 113505 11797130 ~ 11797202 (-)
LOC122350200 LOC107731172,LOC107668058,LOC107549973 coding upstream 114143 11797768 ~ 11801654 (-)
inavaa si:ch211-163l21.4,LOC107731290,LOC107745811,LOC107678807,LOC107667997 coding upstream 144497 11828122 ~ 11837390 (-)
G63134 si:dkey-16n15.6,LOC107667993,LOC107549944,LOC108442380,LOC105898899 non-coding downstream 7794 11667166 ~ 11667480 (-)
G63127 NA non-coding downstream 10500 11663435 ~ 11664774 (-)
G63120 NA non-coding downstream 23370 11648509 ~ 11651904 (-)
LOC122350252 NA non-coding downstream 54069 11620447 ~ 11621205 (-)
G63076 NA non-coding downstream 113641 11560987 ~ 11561633 (-)
G63254 LOC106565120 non-coding upstream 137659 11821284 ~ 11823244 (-)
G63304 LOC107549947,LOC107731153,LOC107668018,LOC107591857,LOC107745734 non-coding upstream 172120 11855745 ~ 11856062 (-)
G63344 NA non-coding upstream 333101 12016726 ~ 12017351 (-)
G63347 NA non-coding upstream 336086 12019711 ~ 12019953 (-)
G63350 NA non-coding upstream 338890 12022515 ~ 12022753 (-)
G63095 NA other downstream 59349 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 329286 11284354 ~ 11345988 (-)
smim1 smim1,LOC107668050 other downstream 505801 11131670 ~ 11169473 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other downstream 544036 11096140 ~ 11131238 (-)
cep104 cep104,LOC107668088,LOC107745778 other downstream 684539 10973305 ~ 10990735 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other upstream 94646 11778271 ~ 11779251 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 367732 12051357 ~ 12054530 (-)
G63385 NA other upstream 580069 12263694 ~ 12264533 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 658535 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 805572 12489197 ~ 12504153 (-)

Expression


Co-expression Network