LOC122350349 (nphp4,LOC107695281,LOC107550077)


Basic Information

Item Value
gene id LOC122350349
gene name nphp4,LOC107695281,LOC107550077
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10826429 ~ 10961990 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246747.1
TAgccactttattattattaatattttaatgaccaCGGCTTCAGAATGTGTAGGTACACCACCGAGCCACACGATGGCGGTATATGGCAGCCCTGCACTTCTCTTCTGCAGGAAAGCGCCAAAACGCTCTTTAATTCACCCTGGCAACGGCTGACAGACGCTATGGCAACCACTACAGAGAGAATCCCTTCCTGATTACTAGCTGAGCccgttttttttccattacatgTAATATGATTGTGAAAATAACAGCGTGATGAGCGTTTGTCAAAAATGACAGAAGTAGTTattctgtaaaattagcccaacTTACACGCGACATGCGTTAGcagcagaaaagaaagagagttgTGTCCTGCAGAGACTGAAATTAATGAGCAGCCTAAAAAGTCTCTGGGTGATTTAGCGTCGCATTTAGTCAATATTCCgcgtttttaattaaataacaagcGCTTAACTTCGCCTGCGGGGATGATTTAACAACCTGCGAAACCTTTAGGCGTTTTCAGGAATGTTTGCCAGGGGACATTAACGCTTACTGACCGACTGACCCCTTTATAGAAACGTTCCGCGGTCGGTTGATAATTCTAAAGAAACCCGCACATGTCTGACTGGAAAAGCGCTTTCTTGAGGAACCGCGTGATCCCGCCTCACAGCCAAACAGCCAGACAAGCTCCAGGATCTTCTCAAGGTCTTCAGCTGCTCTTCAAACAGATAGATGGACTTCACCTAAAacagTCAGAGTCATCGCCATCACTCCAGTATCAGCTGCGTGTGACCCTGTTTGACTCGGGTCACCAGCACTTCTTGCGCACATGGAAGAGCGGCTCACACTCTGTCAGTGGCGTACAGGGTCAGAGCGGTCGAGTGCTCTTCAATGAGGTTGCATACTTCCACACTTCCTTGTGTTTGAGTTCTGTGGTGGCAGTGGTGGAGTTGGTTACTCTGTCTACCAGGGCAGACAGTTCCCAGGATGCACTGGGGTCGGGGTTTGGACTGCTTCAGCTCTTCACAGGTCGCGCAGACACCGGCATCTCTCAGGGGGAGGGCAGGTTGACTCTCTTCAGTGGGACCCCTAGAGCCCTCTTTCACCCGATGCTGAAAGACCCTTTACAGTTGAATGCTGTATTATCAGTGATGGAGGGCTGTCAGCTGCTTTACTCCATACAGCCACACCCAGCTCTCACTCCCATCATGCACCTGCTCCCGCCCAACATTTTGGTGTCTGGACATGACAGCGTCCCCGGTGTGCTGTCATCTGCGGACACAGGCACAGCAGATGTGCTGCGGAAGCCTCGTCTGTTGAAGAGCTTCTCGTGTGTGTTGGAGGGACTACGTGTGGCACTCTTCCCCTCCGTGGAGGTCTTCGAATCTGACCTGCTCCAGCTGCTCAACAGAGACTGCCAGAATACAAACAGGGGTGCGGGGGGACGCTCGGTTGTGGTGCAGGAGCGCAGGCTGCTGGTTGGGGTCCACAACGGCTGGGGCTGGGTGGAGAAGCCTCATGTGTTTGTGCTGGAACGTGAGGCTGCAGGAAGCGGAGCGGCCAGGGCTCGAGCAGCCAGCGCAGGAAGCAGCTTCAGGCAGACCTCCACGGACAGACTCAGTGATGGACTGTCTCTTCGTGGCAGTGTGGAGCTCAAGATGATGAGGGACGTAGCTTTCAGCATTGTCTTCCAGCTCCAGTATGTTTTCTCTTGTCCACTGGCTGGAGATGGGCAGATGACAACCACAGCTGTGCCCAGAGCAGCGTTTATGCAGTGTGTGCGTTGGTGTGCTTGGAGTCTGTTTTCGGATCCTGAGGGTCCCGGAGAGAATGTGTGCCTCCACTTGCAGGGCGGTGCTCTCCCCAACCCTTGGGGTGTCATGGTCTACTCTGCAAGCACACAGCAGACATATTCGGGGAAATCTGTCATCAAATTCAAGTTTTCATCTAGTGTGGAAGGAGCTTCTTGCAGCACGGCATTGAAAGTGAGCCACCGGGAAACATCGCCACCTAAGAAGTTACTTTCAGCATCTCAAGACGAACGGATCTTGGAGCCTATGGTTTCAACTGCAGAGTCTCCACGCGGCCCAGCGCTGCCTCTCTCTCAGCTGGTTGCGACTTCACGCTACCCGACCATGAGCCACACGGTAGGGTCTCCATGGCAACAACAGCTCCCCTCTCTGCTTTCTCCCTCCCCGATGGCATCGGCCCACCAGCTGTCACATGTCGAGCGTCCAGTTGCCGGCAGCATAGCTCATCTGGAGCTGAGTgtgcaggagagagagggaaatagaagtgaggaagaggatgagATGCAGGAGCTGACCTTCACTCCAGTGCACGCCCCTGTCATCACCCTCGGAACGCACGCTTCTGGCTCCTCCAGATCGACCTCCCGGAGATCTTTGGCCAGGCTCTTCTCCTCTGGTTTTCCTCAGATCCTGGACAGTCAAAACCAGGTTGCTGAGGTTCTGGATCCCTCTGAGCCTGTGAACTTTAACCCCCAGAGAGAAGAAGCAGATCCTCTGCAGGCCAACACTCTCATCCTTCAGTTCCTTGCTTTTACCAGGGTCCCTCAAGCTGGAGTGAATTCAGACTGGCCCAGCACTGTCCATTTCAGCTTCCAGCTTTACCGCTTCCCCCCTGTCACCACCGAGCGTCTGAAGCTGCTTGACCCAGAGAGGAACGGCAAGCTGAAATCCAGCTCTGATTACCCCTGTGTCCTCTCTCTTATCAACAAGGACGGCACACTCAACTCTGGTTGTCCAGGTCTGCAGCTGCAGTACCGAGTTGACCCACAGTTCCTCAAGTCTGGTGAACGAGGCTGGTTCTTGCGATACCTGGCGCTCCACTCCCTGCAGATTGATGTCTGGGACAGTGAATCTTTAATGCTGATTGGCTCAGCTGCTGTGGAGCTAAAGCATATGCTGCGTCAAGGCCGCGCCGCCGTCCAGGTGAACCATGAGCTGGAAGTGATCACTACTGAGTACCTGCAGGATGCCAACTTTGCCAGCAGGCATGACAACAAGCACAGCGCCACTCCAGCCATCAATGTCTACACTACCGTAAAAGGAATTCTGCATTTGCGGCTTGGCAACGTTGGTGGCAGTGTGACAAATTCCAAGAGCTCTTTGGCTCTTCCTCCATCGCTCTCCCATGTGGTCCAGCCCAGCGATGCCCCTCAGGGTTTTGCAGGAGGAGGTGTCCCTGCTTTAGCTGTCCTCCAGCTTAACGCAAGCAATGCCAGACGAGCCCGCAGATTGCCAGAAATTGACAGCGAGCTGGCCAGACTGCTACAAAGCACCATGAGGGAAGTAGGCGGAGCCGCACTGCATCAGCAGGCCGAAGCAAAGGAAGTGCGCCAGAGGAAGATTGACAGAATGGCAGCTGTCCGTCAGCACGAGGAGCAGAAAGACCCGCCCCCTTTTCAGGACGGCTCAAACATCACGaggcATCGGGCAGAGCGTGTACAGCACTCTCGCGACCTTCGTGTGATTGAGGCCTATCGTGAGCGCTGTAAAGCGCAGGAGATCACCAACATGCTCTCTCAGGCCATCACTACCAAACACACTCTCTACGCCACGCTTGGAACGGCAGAGTTCTTTGAGTTCATGCTCAAGAATCCCTTCAACGTTCCTCAGACTGTCACCATTGAATGTGATGACCCAGAGCTCCGTGTGCTCGTGAAAACTGAGGAATGGAGATATTTCAAGGAGTTGACAAAGACTCTGACTCCTCTAGAGGAGGAGATGTTTCACCTAAATGAGAGTACACAGACTCCACAGGTCTACCTGCGGCCCAAAGAAAGCGTTCATGTGCCCTTCAAGTATCAGACCTTCATCTGTGGTCACACCTTCCCTATTCAGGATACAAAAAGCTTAAAGACTTCAAGAAGTCCACAGATGGCTCAGAAACATCTGTCCAATACAATTCATGCCAAATCCATCAAGGTGCTGTTCCGAGGAGAAGACAGAAAGCCTCTGGCGATCTGCCAGGTGGATGTTGAACCCACGCCACATGTGGTGGACCAGACCTTCCGATTCTACCAGCCTGAACTCACCTTCCTAAAGAAGGCCATTCGCCTGCCTGCAGCCTGGGACGACACAGCAGATGGTTGTGCCACCCTTCATGTGCGCTGCAGCGACCCCAATGTCATCTGCCACACCACCAACCTGAGTCCAGGAGAACCACAGGATATTTTCCTGAAAGTACCTGGCAGCCCAAGTCCACAGATTAGGAAATTCTTCATAACCATTTCCACTGACCCTTGGCTGGCCTCCCCTGCGCAGATCTGGCAGGTATACGTGCATTACCTGCAAAGGATGGActtgagctgtgtgtgtggcaCTCTGAGCTGGCATTCGCTGGTTCTTCACGGCACACAAGCCATTCGCAGGGTCAAGTGCTACACGTCGCATCCCCTCGAGCTTCAGGTGGACCCAGGTGAGGTTTTTGCTCTTCCTGCTCAGGGAGTTCAGGATGTCTGCGTGGGCCTGAGGGCTCTGCGCCCTGGAAGCCGTTTCTTTTACCTCAATGTAGTGGACGTGGACACTCGGCAGCTAGTTGCCTCCTGGCTGCTGTGCATCACATGCCGACAGCCTATCATCTCCAAGGCATTTGAAATCAGCGTTCCTGTAGATGGAGGGAAGGGCAGCAATAAGAAAATCAGTTTCACAAACCCCTACTCGTCCTCCAGAGTATTCAATCTGCGCACAGATCGCCCAGACCTGCTTCAGTTTAAAGAGGAGCAATTTCAGattGGGGGAGGGGAGCTCTACACCATCGGCTTGCGCTTTGCGCCGAGTCAGAACCCTGGCATGGAAGAGATTCTCATCTTTATCAATGACAAACAGGATAAGAACGAGGACACTTACTGTGTTAGGGTTCAGTACAGATAACACTACACTATCACCCTCCATTACAACTGCAGCTTCTGCCCACAAAAAACAGACTCGATGTGGTTTTACTCCCATCATGTATTTTTGCTTATACGGTGTGATAAGTTGATCCAAATAAGATATGTACTGAAATACAGAGCAAACATACtctatatataaatgcagaGAGCAAGTAAGGTTAACTCCATCTAGCTCATCGGGTACACGGAGTGAAGCGTCTTTCACGTGTGCTGGAGTAAAGCTACCCTGCGGTGCTGCAGGCTGAAACCGAGAAGAGCTTCTGATGCTCATATCGGCGCtcttgatgtgtgtgtttatcattaCGCTGAATCCCCGCTGTGATGTGTCATTAGCAGCGGAGAGTGGATGGCCACTTGCCCAGGACTTCAGCTCTAGATCTTCAAACAGTGAGATGTGTTTGTATGACCAGTCGTTTTAATTTATCAAGTGTTCAGAGTGTTACGTTTGCGCTCACTGACAATAGAGTGCTTAATTTGGGGGAAGAAAATAGACATCCTTCACtctttttgctgtattttttgtactagcatcaataaaaaaaagtctct

Function

symbol description
nphp4 Acts upstream of or within several processes, including determination of left/right symmetry; regulation of Wnt signaling pathway; and urogenital system development. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including ciliary basal body; ciliary base; and ciliary transition zone. Is expressed in blastomere. Human ortholog(s) of this gene implicated in Joubert syndrome 4; Senior-Loken syndrome; congenital heart disease; nephronophthisis; and nephronophthisis 4. Orthologous to human NPHP4 (nephrocystin 4).

NR:

description
PREDICTED: nephrocystin-4

GO: NA

KEGG:

id description
K16478 NPHP4; nephrocystin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246747.1 True 5453 mRNA 0.52 30 10826429 10961990

Neighbor

gene id symbol gene type direction distance location
LOC122349966 NA coding downstream 293091 10529443 ~ 10533338 (-)
LOC122349964 ela2l,LOC107745782,LOC107695279,LOC107549241 coding downstream 297712 10526347 ~ 10528717 (-)
LOC122349990 gpr37l1b,LOC107731282,LOC107668115,LOC107585901,LOC107695275,LOC107549203,LOC107745785 coding downstream 335229 10487790 ~ 10491200 (-)
gls2a gls2a,LOC107731259,LOC107668075,LOC107549149,LOC107745788,LOC107695273,LOC107585893 coding downstream 487760 10329776 ~ 10338669 (-)
cpt2 cpt2,LOC107668114,LOC107585892,LOC107731280,LOC107549124,LOC107695271 coding downstream 506056 10316425 ~ 10320373 (-)
c8h1orf174 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding upstream 2592 10964582 ~ 10968087 (-)
LOC122349916 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding upstream 172713 11134703 ~ 11137541 (-)
LOC122349917 cep104,LOC107668088,LOC107745778,LOC107695283 coding upstream 179193 11141183 ~ 11159286 (-)
lrif1 NA coding upstream 261050 11223040 ~ 11228121 (-)
apex2 apex2,LOC107668008,LOC107550000,LOC107695293,LOC107549375,LOC107745771 coding upstream 267339 11229329 ~ 11232003 (-)
LOC122351000 NA non-coding downstream 1378 10819217 ~ 10825051 (-)
LOC122350960 NA non-coding downstream 26466 10755389 ~ 10799963 (-)
G62861 LOC107549259,LOC107745781,LOC107668121,LOC107555602 non-coding downstream 128304 10696335 ~ 10698125 (-)
G62835 alas2,LOC107731137,LOC107555603,LOC107549233,LOC107745783,LOC107667982 non-coding downstream 303942 10520659 ~ 10522487 (-)
G62829 NA non-coding downstream 341830 10383720 ~ 10484599 (-)
G62974 NA non-coding upstream 235163 11197153 ~ 11205373 (-)
G62977 NA non-coding upstream 239705 11201695 ~ 11210161 (-)
G62992 NA non-coding upstream 314369 11276359 ~ 11276914 (-)
G63014 NA non-coding upstream 444964 11406954 ~ 11441996 (-)
G63065 NA non-coding upstream 561032 11523022 ~ 11523638 (-)
trnar-ccg_26 NA other downstream 286138 10540219 ~ 10540291 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other downstream 346378 10440764 ~ 10480051 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other downstream 434386 10389183 ~ 10392043 (-)
smim24 smim24,LOC107580287 other downstream 578273 10245196 ~ 10248156 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other downstream 784660 9995547 ~ 10041769 (-)
cep104 cep104,LOC107668088,LOC107745778 other upstream 11315 10973305 ~ 10990735 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other upstream 134150 11096140 ~ 11131238 (-)
smim1 smim1,LOC107668050 other upstream 169680 11131670 ~ 11169473 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other upstream 322364 11284354 ~ 11345988 (-)
G63095 NA other upstream 600288 11562278 ~ 11615925 (-)

Expression


Co-expression Network