si:dkey-72l14.3 (si:dkey-72l14.3,LOC107679458,LOC107711968,LOC107591777,LOC107669647)


Basic Information

Item Value
gene id si:dkey-72l14.3
gene name si:dkey-72l14.3,LOC107679458,LOC107711968,LOC107591777,LOC107669647
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12621092 ~ 12623350 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246815.1
GGGTGAGGGGCCCTGAAACCTCTCACTCAACTCCATGGCTGGAAGCAAACACACGCTCGTCAtcctcttcctttctctccGATTCCTCCTCCTCTGTCTCTTCACTCATCCATGTGTATGCGGTCCTGCCCGGGCACCTCTTCTCGCCGGCCAGCCTTTCCTGGTGTTATGGGGTGTTCCAGATAAAGACTGTTTGGGTCGGCCTGACCCAGCTGCGTTTGGGATGGAGTGGGAAGGTCGTGTGGCAATATTTTATGAGGACACACTGGGACTTTACCCATATTTCACTGCTCAGGACCGTTCTGTCAATGGTGGCCTACCACAACACACCAGCCTTGATCTTCACCTACAGCGGGTGGAGGGCGACCTGACGACCTCTTTACCCCAAGCAGGAGCACCTGGTTTAGGGGTGCTGCGGTGGCAGGAGTGGGCGCCTCAGTGGAACAGGAACAGGGGAATTAAAACAAAGTATCTTGTGGAGTCGAGGGCACTTCTCCGGGGATTTTTTCCAGACTGGAGCACAGAGGAAGTGGAGAAATGGTCACAGGTTGACTTTGAAGCAGCAGCACAGTCCATTATGATGGAAACCCTGCGGGAGGTGAAGAGACTCCGCCCACAAAGATTATGGGGCATGGCCCCATTTCCTAACTGCTATAACTTTGACTCCACCCAGATAGCTTTAGCCAATTACACGGGACGGTGCCCTGCCGCAGAAATGGCCCTTAATGATGAGCTGATGTGGCTTTGGAAGCGAAGCGGTGCCCTTTATCCAGCCCTATCGCTGGAAAAGCTGCCAGAGGGAACTAAAGGGACGTGGCTTTACGCAACCAATCAGATCAGAGAGGCTTTGCGAGTGGCGGCTCTCGCAGGGACTACTTTTGATCTTCCTGTGTTTCCGCTGATAAAGATTGTGTACGCCTCTTCTAGCTCCTTTCTCTCAGAGGCTGATCTAGTGAACACAATTGGAGAGAGTGCTGCTATGGGAGCATCTGGAGTCATAATATGGGAAAAATCCTTAGCAGTTAAAACACAGAAATCCTGCTCAGAGTTCGGCTCGTATGTTCGTCGGGTTCTTGGCCCGTACGCTGTCAATGTGACAACCGCCGCACGTCTCTGTGGAGTCTCATTGTGTCAGGGCCGTGGACGCTGTGTGCGTAAGAAACCCGAGGACCCCACATACCTGCATCTTCCTTCAGCACACTTTATGCTTCTCCCAAACGGGGCAGAAGGTGTCCGGGCCACGGGAGAGCTTCCCACCGCTTACATAGATCTCTGGAAGAAGGACTTCCGCTGCCAGTGGTTCGAAGCCTTGGAGGGGGCAGCAGCGGATCAAGAATCAGGCGTAGTGCTGGAAAACCGAAGGAAAATAACATCAccaacagtaaaaacagtggTTGGGATGAGCCAGAGTCAGAGTACAGCGGTTCCAGCGATTCCAGTCACAGTAGTGCCTACCAAGCAGCCAGTGGCCGGCGGAAATTCTGCACTTAATACACCCATCATCCTTCTCTCCTCACTGGTTCTTCATTACGTCTGAGGAGAAGACAGCTGGAGTGTGTAGGAACTTTTGTGAACCTCTGTTGGCCTTGACTTTGATTGCTAATTGctaaattgattttaatataaatacacaaagggATAACTGTTAAGAGAATAGCTTCTGTGAACGACAATTTCAGTGATTTAAATTCACAATCTGAACATGGCTGAATAAACA

Function

symbol description
si:dkey-72l14.3 Predicted to enable hyalurononglucosaminidase activity. Predicted to be involved in hyaluronan catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in cytoplasmic vesicle.

NR:

description
hyaluronidase-1-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004415 hyalurononglucosaminidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246815.1 True 1717 mRNA 0.51 4 12621092 12623350

Neighbor

gene id symbol gene type direction distance location
opn7c opn7c,LOC107711973,LOC107707675,LOC107550512 coding downstream 46859 12566263 ~ 12574233 (-)
efhd2 efhd2,LOC107591793,LOC107711975,LOC107550510,LOC107707677 coding downstream 59626 12544391 ~ 12561466 (-)
taf10 taf10,LOC107679390,LOC107591795,LOC107711978,LOC107550511,LOC107707678,LOC106572212 coding downstream 77189 12541668 ~ 12543903 (-)
suv39h1b suv39h1,suv39h1b,LOC107550505,LOC107679310,LOC107591797,LOC107669636,LOC108265881,LOC108442234 coding downstream 103451 12511451 ~ 12517641 (-)
tspy LOC107550504,LOC107731226,LOC107711967,LOC107679295,LOC107591801 coding downstream 132052 12484451 ~ 12489040 (-)
LOC122350402 LOC107556499,LOC107669622,LOC107717519,LOC107679589,LOC107711962,LOC108190967 coding upstream 108864 12732214 ~ 12735194 (-)
si:dkey-20d21.12 NA coding upstream 180577 12803927 ~ 12806602 (-)
sema3b LOC107717529,LOC107556489,LOC107669651,LOC107591772,LOC107711952 coding upstream 267124 12890474 ~ 12919391 (-)
tmem51a tmem51a,LOC107717531,LOC107669600,LOC107556479,LOC107679674,LOC107711951,LOC107591770 coding upstream 319340 12942690 ~ 12948591 (-)
kazna kazna,LOC107669642,LOC107556484,LOC107591771,LOC107711950,LOC107717500,LOC107680131 coding upstream 325353 12948703 ~ 12982222 (-)
G63490 NA non-coding downstream 129210 12490277 ~ 12491882 (-)
G63486 NA non-coding downstream 162235 12456048 ~ 12458857 (-)
G63408 NA non-coding downstream 283898 12336876 ~ 12337194 (-)
G63407 NA non-coding downstream 284269 12336114 ~ 12336823 (-)
G63406 NA non-coding downstream 285071 12335766 ~ 12336021 (-)
G63578 NA non-coding upstream 25292 12648642 ~ 12649214 (-)
G63579 LOC107679480,LOC107711917,LOC107669654,LOC107556492,LOC107717512,LOC107591779 non-coding upstream 26933 12650283 ~ 12652814 (-)
G63581 NA non-coding upstream 31737 12655087 ~ 12657144 (-)
G63585 NA non-coding upstream 40955 12664305 ~ 12670577 (-)
G63588 NA non-coding upstream 47994 12671344 ~ 12672857 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other downstream 116939 12489197 ~ 12504153 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other downstream 257988 12342160 ~ 12363104 (-)
G63385 NA other downstream 356559 12263694 ~ 12264533 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 566562 12051357 ~ 12054530 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 841841 11778271 ~ 11779251 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 362304 12985654 ~ 13083372 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other upstream 562517 13185867 ~ 13246130 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other upstream 1093278 13716628 ~ 13720514 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other upstream 1186078 13809428 ~ 13863250 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other upstream 1762250 14385600 ~ 14455243 (-)

Expression


Co-expression Network