cpox (cpox,LOC107657924,LOC107717573,LOC107585846,LOC107550392)


Basic Information

Item Value
gene id cpox
gene name cpox,LOC107657924,LOC107717573,LOC107585846,LOC107550392
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9300474 ~ 9305341 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246885.1
GTCACGACACGCCTTCTCGGACAGAACTATTGGAGAAGCTACGTGCAAAACTGCATATAGTTACTTTACACCCATTTATGATCCTCTTATCGACTGGCAGCTCGTGGTCCGAGACAGTTGGTGACGCTCAGTGGACAAAATGACTTCTATAGCTTTGTGCACAATAAACAGCTCAGCGAGATCAATAGCAAGACTGTGCCAAGTGTCCCGCTCTGCGCATGGTACAGCTGATTTCCACTCTCTCGTAGCCCGTTATTCTACCCTCCGTAAATGTGCCTTTCTTCCGGGAGGAAAATTGTCACTCATGAGAGCAGGAACGAGACAGATGTCTCAAGCATCGCCGGGGAGGATCTCACTCGGTCGGTACGGTAAAGGTGTATTTCTGGCTGCAGGGGCAGCAGCTGTCACCGGGGTCCTGACGGCAGGTGTAAGTCACTTTCAGCGGGCCGAGATGGCAACGAAAATATCCAaagttgaagaagaagaagagggaaACATACGGGAAAGATGCAAGTCGTTCATGTCTCCACCAGTCACTGACATCAGGGTCTTAGAGCAGAGGAAAGACGCGATGTCTACGAGAATGGAGATGCTCATCATGGAGACACAGGCTGCATTCTGTAGAGCCCTTGAAGAGGTGGATGGAGGCTCGTTCAGGGTGGACAGATGGAGCAGGAAGGAAGGTGGCGGTGGCATCAGCTGTGTGATGCAAGATGGGAAGGTTTTTGAGAAAGCGGGTGTGAACGTGTCCGTGGTGTTTGGGAACCTCACTGAAGAGGCTGCAAAGCAAATGCGCAGCCGTGGAAAAGTTCTGAAAGGGAAAGATGGGAAGCTGCCGTTCTGTGCCATGGGCGTGAGTTCAGTCATACACCCAAAAAACCCCCACATTCCCACAGTGCACTTCAACTACAGATACTTTGAGATTGAGGAAGCAGACGGCACAAAGCAGTGGTGGTTTGGTGGAGGAACGGATCTCACTCCTGTTTATATTGATTTGGAAGATGCCGCCCATTTCCACAAGACTCTGAAAGAAGCGTGTGACAAGCACCATCCTAAATTTTACCCAGACTTCAAAAAGTGGTGTGACAATTACTTCTACATCCGTCACCGAGGAGAGACGAGAGGAATTGGTGGGATCTTTTTTGATGATCTGGATTCCCCCAATCAAGAGGAGGCCTTTAATTTTGTGAAGAGCTGCGCTAAAACTGTGGTGCCTTGTTACGTGCCCATCGTAAACAAACATCTAAATGACTCCTTTACTCCTGAGGAGAAGGACTGGCAGCAAATCCGGAGAGGCAGATATGTGGAATTTAATTTAGTGTATGACAGAGGGGTGAAATTCGGCCTGGCCACACCTGGCTCTCGCATCGAGAGCATCCTGATGTCCCTACCACTTACAGCTAGgTGGGAGTACATGCATGAGCCCACAAAAGGCACTAAAGAAGCTGAGATGCTGGCGGTCTTACGGAACCCTAAAGAATGGGTCTAATTGAGAGGAAGACCGGTTTAACTGGTCCTCGATATTGGCATTATTGGATGGGAATTGTAAAAAAAGGTGGGTGTGGTTTTCTCTGGATTAGTTCAGTGATACCAAACACGTCAGCAACTTCAAGTACAAGATTCACTGAATTAGAAAATCAGCTTCTCTGACAGGACACATTCTCATCGTTTGACTAATTGTTTTTGGTGACTGCAGCACTGCACGATTAATGAACTCTCCATCACTGCCGTTGGCTGTATGGGTTCACTGGAGACGCAGTGTTTGTGTTACTTAGTTACAGCTTTGTTTCTGCTTGCACTGCTTTAATCATGACTACTGGTGTACTAACCCGTAATGGCTTTGgttgtgctgtttttaaatggatGGGTTAATTGTCTAAAGGGTCATGTTTACCATGTTCTGATGCAAGCATCATGCCATTATTGCTTTTCTTATACTGTTCATCTTTTTTTGTGCCTCACTTCAAAGTTGTTTCGTGTCCTGTTATGTGCTAGCATATctttattctttaatttttttttacagatattaaaatacaattcaaaagtattcaagacatttttaagttgATATTCTgtgtattgcaaaacaaaataaagtttttatatgtgattttaaaaaatcttgtcAATAAAGTTATACATGTGTTCAAAAATCA

Function

symbol description
cpox Predicted to enable coproporphyrinogen oxidase activity. Acts upstream of or within hemoglobin biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrial intermembrane space. Is expressed in hematopoietic system; mesoderm; presumptive blood; and ventral mesenchyme. Human ortholog(s) of this gene implicated in hereditary coproporphyria and liver disease. Orthologous to human CPOX (coproporphyrinogen oxidase).

NR:

description
oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial-like

GO:

id name namespace
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004109 coproporphyrinogen oxidase activity molecular_function

KEGG:

id description
K00228 CPOX, hemF; coproporphyrinogen III oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246885.1 True 2159 mRNA 0.45 7 9300474 9305341

Neighbor

gene id symbol gene type direction distance location
tmem47 LOC107585845,LOC107717575,LOC107750585,LOC107548625,LOC107657933,LOC107699999 coding downstream 8338 9284843 ~ 9292136 (-)
nexn nexn,LOC107717577,LOC107657915,LOC107750547,LOC107548557 coding downstream 27898 9263622 ~ 9272576 (-)
zgc:153738 zgc:153738,LOC107585835,LOC107657937,LOC107758266 coding downstream 62414 9232722 ~ 9238060 (-)
obscna obscna,LOC107657853,LOC107585905,LOC107758262 coding downstream 70372 9190061 ~ 9230102 (-)
dmap1 dmap1,LOC107758267,LOC107585836,LOC107657923,LOC107750524,LOC107699933,LOC107548533 coding downstream 110558 9184030 ~ 9189916 (-)
stap2b NA coding upstream 15921 9321262 ~ 9329188 (-)
sh3gl1b sh3gl1b,LOC107750655,LOC107700047,LOC107717567,LOC107548638,LOC107585850,LOC107657927 coding upstream 30341 9335682 ~ 9352554 (-)
rorca LOC107657922,LOC107750669,LOC107548667,LOC107585851 coding upstream 48327 9353668 ~ 9366787 (-)
sema6bb LOC107585853,LOC107717564,LOC107750685,LOC107657917,LOC107549930,LOC108413003,LOC107700081 coding upstream 73150 9378491 ~ 9490669 (-)
abhd17ab abhd17ab,LOC107700092,LOC107717562,LOC107548688,LOC107657939,LOC107750691,LOC107585854,LOC105895145 coding upstream 198671 9504012 ~ 9511635 (-)
G62293 glis1,LOC102303521 non-coding downstream 215280 9082795 ~ 9085194 (-)
G62250 dio1,LOC107700640 non-coding downstream 261774 9030865 ~ 9038700 (-)
G62263 lrriq3,LOC107657910,LOC107585823,LOC107699824,LOC107548466 non-coding downstream 293369 9006834 ~ 9007105 (-)
G62262 NA non-coding downstream 293695 9006555 ~ 9006779 (-)
G62255 NA non-coding downstream 327701 8968289 ~ 8972773 (-)
G62519 NA non-coding upstream 103073 9408414 ~ 9414439 (-)
G62525 NA non-coding upstream 221286 9526627 ~ 9526966 (-)
G62564 NA non-coding upstream 397618 9702959 ~ 9703191 (-)
G62565 NA non-coding upstream 398035 9703376 ~ 9703598 (-)
G62567 NA non-coding upstream 403632 9708973 ~ 9709221 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other downstream 37648 9257243 ~ 9262826 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 643188 8652304 ~ 8657286 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 650491 8647270 ~ 8649983 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 883921 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 1067700 8117008 ~ 8232774 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 395053 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 649340 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 690206 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 939855 10245196 ~ 10248156 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other upstream 1083842 10389183 ~ 10392043 (-)

Expression


Co-expression Network