tmco1 (tmco1)


Basic Information

Item Value
gene id tmco1
gene name tmco1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10298359 ~ 10300306 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246944.1
CGGGCGCACGCTGATGATGTCATCACAGTAACGCTGACGCTGCTACAGTAGAGCTTGTGGCTCAACCAAAGTATTATCTTGTATTATCAATCCACTAAAGGTTTTTCCAAAATGAGCACAATGTTTGCAGATACGATTTTGATTGTGTTTATATCCATTTGCACGGCATTATTAGCGGAAGGTATAACATGGGTTCTAGTGTACCGCACAGACAAATACAAGAGACTAAAGGCCGAGgttgaaaaacaaagcaaaaaactggagaaaaagaaagagacaatTACAGAATCAGCCGGGCgtcaacagaagaaaaaaatagAGAGACAAGAGGAGAAACTCAAGAACAATAACAGAGATCTGTCTATGGTCCGGATGAAATCAATGTTTGCCATTGGCTTTTGCTTCACTGCGTTGATGGGCATGTTCAACTCCATcTTCGATGGTCGTGTTGTAGCCAAACTTCCATTTGTCCCATTGTCGTATATTCAAGGCCTATCACACCGCAACCTCCTGGGTGAAGATTACACCGACTGTTCCTTCATCTTCCTCTACATCCTGTGCACCATGTCAATTCGACAGAATATCCAGAAGATGTTGGGTCTCGCCCCCTCCCGTGCCGCCACCAAACAGGCTGGAGGATTTTTAGGACCTCCTCCACAAGCTGCTAAGTTTTCGTGAACATTTGTAGACAGTGGGATCCCTACCTAAAAAGATCAGACACTCGGCTGTACATTTGTGTGAACAGCActcagtgtgtgagagtgataATAAGGTTGTGCAGCTACCGTTACCTGTGATGAAGTCAAGTgcattgtgtcttttttttggtttattgctgttttttaatcAGGTAAATTTCTAACTTGCATGTAGTCGCATTTCTAACAGAAAATGTTCCTTGAGCAAAGATGGTTATGAATGTAAATTCAGTCTGAAGCATTTCTTTAAACCTGTTTGTTGCTCAGAAGGTTACAATGATTCTTTGTTGTaactattataattttattgttaCCTACAagcaatattaattaatataacttCATATTTAGAATTTGAGAGAGCAGTTTGATTGGTGGATTCTTAgaatgtttatttcttcttatttttttggGTTGTctgaaaaagttttatttaagttCAATAAAGAATTTTGTGAGTTCA

Function

symbol description
tmco1 Predicted to enable calcium channel activity. Involved in calcium ion transmembrane transport and endoplasmic reticulum calcium ion homeostasis. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; hatching gland; lens; polster; and solid lens vesicle. Orthologous to human TMCO1 (transmembrane and coiled-coil domains 1).

NR:

description
transmembrane and coiled-coil domains 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K21891 TMCO1; calcium load-activated calcium channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246944.1 True 1161 mRNA 0.39 7 10298359 10300306

Neighbor

gene id symbol gene type direction distance location
LOC122350862 aldh9a1,aldh9a1a.1,aldh9a1a.2,LOC107695268,LOC107668102,LOC108441636 coding downstream 1287 10291698 ~ 10297072 (-)
zgc:112962 LOC107695265,LOC107745796 coding downstream 7249 10284492 ~ 10291110 (-)
si:dkeyp-82a1.6 LOC107550035 coding downstream 13997 10280303 ~ 10284362 (-)
haus5 LOC107731222,LOC107585885,LOC107745798,LOC107695262 coding downstream 26362 10264841 ~ 10271997 (-)
LOC122349939 LOC107731225,LOC107701761,LOC107585934,LOC107745801,LOC107550447,LOC100005423 coding downstream 39167 10257145 ~ 10259192 (-)
cpt2 cpt2,LOC107668114,LOC107585892,LOC107731280,LOC107549124,LOC107695271 coding upstream 16119 10316425 ~ 10320373 (-)
gls2a gls2a,LOC107731259,LOC107668075,LOC107549149,LOC107745788,LOC107695273,LOC107585893 coding upstream 29470 10329776 ~ 10338669 (-)
LOC122349990 gpr37l1b,LOC107731282,LOC107668115,LOC107585901,LOC107695275,LOC107549203,LOC107745785 coding upstream 187484 10487790 ~ 10491200 (-)
LOC122349964 ela2l,LOC107745782,LOC107695279,LOC107549241 coding upstream 226041 10526347 ~ 10528717 (-)
LOC122349966 NA coding upstream 229137 10529443 ~ 10533338 (-)
G62800 NA non-coding downstream 33598 10263818 ~ 10264761 (-)
G62795 NA non-coding downstream 45103 10250633 ~ 10253256 (-)
G62789 NA non-coding downstream 141166 10156975 ~ 10157193 (-)
G62788 NA non-coding downstream 145454 10152239 ~ 10152905 (-)
LOC122350767 NA non-coding downstream 147368 10127885 ~ 10150991 (-)
G62805 NA non-coding upstream 1356 10301662 ~ 10301885 (-)
G62817 NA non-coding upstream 25435 10325741 ~ 10327208 (-)
G62821 NA non-coding upstream 70027 10370333 ~ 10373331 (-)
G62824 cry1 non-coding upstream 81411 10381717 ~ 10443630 (-)
G62829 NA non-coding upstream 83414 10383720 ~ 10484599 (-)
smim24 smim24,LOC107580287 other downstream 50203 10245196 ~ 10248156 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other downstream 256590 9995547 ~ 10041769 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other downstream 328874 9954681 ~ 9969485 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other downstream 589738 9700394 ~ 9708621 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other downstream 1035533 9257243 ~ 9262826 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other upstream 88877 10389183 ~ 10392043 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other upstream 140458 10440764 ~ 10480051 (-)
trnar-ccg_26 NA other upstream 239913 10540219 ~ 10540291 (-)
cep104 cep104,LOC107668088,LOC107745778 other upstream 672999 10973305 ~ 10990735 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other upstream 795834 11096140 ~ 11131238 (-)

Expression


Co-expression Network