tnni3k (tnni3k,LOC107743849,LOC107550356,LOC107699804,LOC107657874,LOC107710912)


Basic Information

Item Value
gene id tnni3k
gene name tnni3k,LOC107743849,LOC107550356,LOC107699804,LOC107657874,LOC107710912
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8991343 ~ 9001962 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247006.1
AAGCATTGTGTTACCACTGCAAGAGACTTTCCCTGCAGCTAACCGTGTACAAAAGTTTAAACCAACCAATCTGATGGGGAATTATAAATCAAGACCCACTCAAACCTGTACAGATGAGTGGAAAAAGAAAGTGAGTGAATCATATGCTGTTATAATTGAGAGACTGGAGGAAGACTTGAAAATTAAGGAGGAGGAGTTCAAGGAACTCAAGCATGTTTTCAGCTCAGATGAAGCATTTAATAAGGTCAATCTGAATTACCGCACAGAGGGTGGACTGTCCCTGCTGCATCTCTGCTGTATATGTGGAGGGAATAAAGCTCACATCAGGACCCTCATGTTGAAAGGCCTGCGTCCGTCCAGACTTACCCGGAATGGATTCACTGCACTGCACCTGGCAGCATTCAAGGGTAATGCTGAACTGGTCACTGCGATGCTGCATGGTGGAGCAGATATCCAGCAGGTTGGGTACGGAGCCCTCACGGCCCTACATATAGCTACTGTGGCCGCCCATCTTGAGGCTGTTGATATTCTCTTGCAACACGGGGCTTATGTCAATGTCCAAGATGCTGTTTTCTTCACCCCTCTGCACATTGCAGCTTACTTTGGCCACGAGCAGGTATGCAAGCTCCTGATGAAGTTTGAGGCTGATGTCAATGCAAGTGGAGAGGTGGGGGACAGACCGCTTCACCTGGCCGCAGCTAAAGGCTATCTGGGCATTGTCAAACTGCTGGTGGGGGATGGCAGCAAGACTGAAGTCAATGCTCAAGACAATGAGGACCATGTTCCCCTTCATTTCTGCTCTCGATTTGGACACCAAGAGGTTGTCCGTTTCCTTCTGCAGGGCACCTTTGACACACAGCCACACTCTGTGAACATCTACGGTGACACACCTCTACACCTAGCTTGCTACAATGGAAAGTTTGAAGTGGTGAAAGAGATTATTCAGTTGTCGGGCACAGAGAGTCTGTCTAAGGAGAACATCTTCAGTGAGACAGCTTTTCACAGTGCCTGCACCTATGGCAAGAACCTGGAAATGGCCAAGTATCTGCTCAGTCAGAATGCCGTAAGCATCAATCATCAGGGGCGAGATGGACACACGGgTCTGCACAGTGCCTGTTTCCATGGACACATCCGATTGGTCCAGTTTCTTTTGGACAACGGGGCAGATATGAATCTGGTAGCTTGCGACCCCAGCCGCTCGAGTGGGGAAAAGGATGAACAGACATGCTTAATGTGGGCATATGAGAAAGGCCATGATGCCATTGTTACTCTGCTAAAACACTACAAGCGACCTCAGGATGATTCACCCTGCAATGAATATTCTCAACCAGGAGGGGaTGGATCTTATGTTTCTGTTCCTTCTCCCCTGGGAAAAATCAAAAGTATGACTAAAgAGAAGGCAGATGTGCTTCTCCTGAGAGCAAGTCTTCCATCAAACTTCCACCTTCAACTTTCTGAACTGGAGTTTAACGAGATTATTGGATCAGGCTCCTTTGGAAAGGTCTACAAAGGAAGGTGCCGCAATAAGATAGTTGCAATTAAACGGTACCGCGCAAACACATACTGCTCAAAGTCAGATACAGATATGTTCTGTCGGGAGGTGTCCATCCTGTGTCGTCTCAACCATCCCTGTGTGATCCAGTTTGTGGGGGCATGTTTGGACGACCCCAGTCAGTTCGCTATTGTAACCCAATATGTGTCTGGAGGATCCCTGTTCTCACTGCTACATGAGCAGAAGAGAATCATCGATCTGCAGTCCAAGCTCATCATTGCCATTGATGTAGCGAAGGGCATGGAGTATCTGCACAATCTGACTCAACCAATCATTCACAGAGACCTCAACAGTCATAATATTCTACTGTATGAAGATGGACATGCTGTGGTGGCTGATTTTGGAGAGTCTCGCTTCCTGTTGTCTGTGGATGAGGATAACATGACTAAACAACCAGGGAACCTGCGTTGGATGGCCCCAGAGGTGTTTACCCAATGTACACGCTACACTGTGAAAGCGGACATGTTCAGTTATGCTCTCTGCCTGTGGGAGCTGCTCACGGGAGAGATCCCATTCGCACATCTAAAACCAGCTGCAGCTGCTGCGGATATGGCGTATCATCATGTCCGACCTCCCATCGGATACTCGATTCCCAAACCCATCTCGGCACTGCTGATGAGAGGCTGGAATGTCTGTCCTGAGGAAAGACCCGAGTTTTCGGAAGTGGTTGCCAAACTAGAGGAATGCCTGTGCAACGTGGAGctaatgtctccagcctccagTAACAGCAGTGGTTCTCTTTCGCCCTCATCCTCCACTGACTGCCTGGTTGCACGTGGTAGTCCTGGACGAAGTCACGTAGCTGCCCTTCGCTCGCGCTTCGAGTTGGAATACGCCCTCAACTCCCGTGCCTATGCTTTTTGGACTCAAAACTCTGGTCGGAGGTCTTCACAGGGCTTATCCCTGGATGAGCTGAGGAGGAACATGCAGTTCCCACCCATTGACCGAAACGGATATGTGTCAGATCCCATGAGCACCATGCGTTTCCATTCATGCAGCAGCAATGGAAGTTTTGAGGACAGCAACTAGAAGCAGCGACTATCTGAAGAACATGACGTGCAAACACGCTTGCATACATGACATGTCTGATTACCATAATTATGAGTTTTCAAACTACTATTCACATTGTTGTCGATGGCGTAATGTTCAAAGAGCTCAGACTTCTTCCAACCCAAATGGAAcaacaaacatgaaacaaaacctCTCAGTGAGTCATTTAgcgttattaaaaaaaaccctaataatTTAGAGGTCCGAGAGTGCGAACAGCTCAGGAGTAGAATATCAGAATTGTCAGCTTGTAATTATTATGGTGAACACACCATATTTAGTCTAGGGACACATAACACTCAATTTGGatgatttgtttacttttttgtgtgttatttttcaggAATTGCGTGTACTTTTGTATGAGAAGGAAGATTTAAACATACTTATTATACAGttctacattttcattataCTTACAATTTATCTCAAAGTTTTGGTTCAATGTCaaaacttatatttttattgtttttttttttattacgttcaGTGTTTCAGCGTCAAGTAAGTATCTGGTAGAGCAGGACAAATAAgtgtatttcagtattttattctaatttcaaaagcaaacagcttttttaaacaaataaaccagCAAGTGGAAAAGGAACTTCATGACTGATGTCACTTAACAACACAGACACTGTTTGAGCAATTTGGCCTTACATGTGGGATTGAAACATTACAAGCTTCGATTTGAACTCCCATGATCTGTATGAATATGACAAGAAGTAAAGAAGGTATCTTAGTAATGTATGTGAACTAATCCAGTGTAAAATCATAAGAACACCATTAAACTAGTGCCAAAAATCA

Function

symbol description
tnni3k Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Orthologous to several human genes including FPGT-TNNI3K (FPGT-TNNI3K readthrough).

NR:

description
PREDICTED: serine/threonine-protein kinase TNNI3K

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K17535 TNNI3K; serine/threonine-protein kinase TNNI3K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247006.1 True 3415 mRNA 0.45 25 8991343 9001962

Neighbor

gene id symbol gene type direction distance location
LOC122350776 LOC107599836,LOC107657909,LOC107710921,LOC107743853,LOC107548462 coding downstream 15403 8972793 ~ 8975940 (-)
st6galnac5b st6galnac5b,LOC107599835,LOC107657873,LOC107710911,LOC107743856,LOC107550326,LOC107700626 coding downstream 56592 8922693 ~ 8934751 (-)
prkcz prkcz,LOC107710919,LOC107743854,LOC107548418 coding downstream 79356 8820356 ~ 8911987 (-)
skia ski,skia,LOC107548407,LOC107699765,LOC107657901,LOC107599811,LOC107710903 coding downstream 182744 8746887 ~ 8808599 (-)
rab3c rab3c,LOC107599832,LOC107700568,LOC107743864 coding downstream 385177 8600995 ~ 8606166 (-)
fpgt fpgt,LOC107699845,LOC107585822,LOC107548491 coding upstream 259 9002221 ~ 9006003 (-)
acot11b LOC107710923,LOC107585821,LOC107657911,LOC107548485,LOC107743846 coding upstream 7764 9009726 ~ 9018000 (-)
rps8b LOC107743876,LOC107710907,LOC107579213 coding upstream 108429 9110391 ~ 9113350 (-)
elovl8b elovl8b,LOC107657928,LOC107585829,LOC107743843,LOC107699894,LOC108442366,LOC103026255 coding upstream 111525 9113487 ~ 9116378 (-)
mutyh mutyh,LOC107657919,LOC107585828,LOC107743842,LOC107750490,LOC103399401 coding upstream 114658 9116620 ~ 9121780 (-)
G62255 NA non-coding downstream 18570 8968289 ~ 8972773 (-)
LOC122351086 NA non-coding downstream 49088 8936078 ~ 8942255 (-)
G62241 NA non-coding downstream 69647 8921481 ~ 8921696 (-)
G62235 NA non-coding downstream 70439 8918758 ~ 8920904 (-)
G62239 NA non-coding downstream 77339 8913482 ~ 8914004 (-)
G62262 NA non-coding upstream 4593 9006555 ~ 9006779 (-)
G62263 lrriq3,LOC107657910,LOC107585823,LOC107699824,LOC107548466 non-coding upstream 4872 9006834 ~ 9007105 (-)
G62250 dio1,LOC107700640 non-coding upstream 28903 9030865 ~ 9038700 (-)
G62293 glis1,LOC102303521 non-coding upstream 80833 9082795 ~ 9085194 (-)
G62519 NA non-coding upstream 406452 9408414 ~ 9414439 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 334057 8652304 ~ 8657286 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 341360 8647270 ~ 8649983 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 574790 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 758569 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 1303781 7677496 ~ 7687562 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 255281 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 698432 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 952719 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 993585 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 1243234 10245196 ~ 10248156 (-)

Expression


Co-expression Network