rps8b (LOC107743876,LOC107710907,LOC107579213)


Basic Information

Item Value
gene id rps8b
gene name LOC107743876,LOC107710907,LOC107579213
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9110391 ~ 9113350 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247367.1
ATGGGTATCTCCATTCATTGACACAAGCGTCGTGAAACCGGAGGGAAAAGAAGAAAGTATGAGCTGGGTCGTCCTCCAGCCAACACAAATATGGGCCCCCGTCGTATTCACACGCGCGCGCTGAGGCTGGACGGCGGGAACTTCGCCTGAGGCTCCGAGTGTTGCACTCGCAAAACCAGGATCATTGACGTTGTGTGCAATGCCTCCAACAATGAGCTTGTGAGAACCAAGACCCTGGTGAAGAACTGCATTGTTCTGGTGGACAGCACACTGTTCGGGCAGTGGTATGACCCACTGGGCTGCAAGAAAGAGGCAAAGCTGACTCCAGAAGAGGACAAGATCTTTAGCAAGAAACGGTCAAAGAAGGTTCAGAAGAAGATTAATGGACGCAGAAAGAACAGCAAAATTAGTAGTTTGCTGGAGGAGCAGTTCTTGCAGGGCAAGCTTCTTGCCTGTATTGCGTCTAGGCCTGGTCAATATGGCAGTGCAGACGGATACGTCTTGGAAGGAAAAGAACTCGAATTCTACCTTCAGAAGATTAGAGCCAAGAAAGGCAAATAgacttataaaatatattgcactTCCATTCAAGTAGTCAGTACTCCGTTCTGTATTCAGCACTGACTGCACTTTCACGTTACAATCtacttttcttatttctttgtTCTATTTATCACCATCACATCAGCACATGTGAGGCCAAATTAAAAACGTCAGTCGTGTACTTAATGACAAAAGTGATTGAACCTTAAATTTGAACCATTCCGAttccatgtaaaaaaaaaaaactgtg

Function

NR:

description
PREDICTED: 40S ribosomal protein S8-like, partial

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247367.1 True 793 mRNA 0.45 9 9110391 9113350

Neighbor

gene id symbol gene type direction distance location
acot11b LOC107710923,LOC107585821,LOC107657911,LOC107548485,LOC107743846 coding downstream 92391 9009726 ~ 9018000 (-)
fpgt fpgt,LOC107699845,LOC107585822,LOC107548491 coding downstream 104388 9002221 ~ 9006003 (-)
tnni3k tnni3k,LOC107743849,LOC107550356,LOC107699804,LOC107657874,LOC107710912 coding downstream 108429 8991343 ~ 9001962 (-)
LOC122350776 LOC107599836,LOC107657909,LOC107710921,LOC107743853,LOC107548462 coding downstream 134451 8972793 ~ 8975940 (-)
st6galnac5b st6galnac5b,LOC107599835,LOC107657873,LOC107710911,LOC107743856,LOC107550326,LOC107700626 coding downstream 175640 8922693 ~ 8934751 (-)
elovl8b elovl8b,LOC107657928,LOC107585829,LOC107743843,LOC107699894,LOC108442366,LOC103026255 coding upstream 137 9113487 ~ 9116378 (-)
mutyh mutyh,LOC107657919,LOC107585828,LOC107743842,LOC107750490,LOC103399401 coding upstream 3270 9116620 ~ 9121780 (-)
armh1 si:ch211-241d21.5,LOC107750499,LOC107699909,LOC107548505 coding upstream 9099 9122449 ~ 9127648 (-)
guk1b guk1b,LOC107585833,LOC107758268,LOC107657930,LOC107750510,LOC103024702,LOC108442369,LOC105895130,LOC106905753 coding upstream 14523 9127873 ~ 9131091 (-)
rnf220b rnf220b,LOC107585921,LOC107758263,LOC107700469,LOC107657852,LOC107549863,LOC107750994 coding upstream 21146 9134496 ~ 9164096 (-)
G62293 glis1,LOC102303521 non-coding downstream 25197 9082795 ~ 9085194 (-)
G62250 dio1,LOC107700640 non-coding downstream 71691 9030865 ~ 9038700 (-)
G62263 lrriq3,LOC107657910,LOC107585823,LOC107699824,LOC107548466 non-coding downstream 103286 9006834 ~ 9007105 (-)
G62262 NA non-coding downstream 103612 9006555 ~ 9006779 (-)
G62255 NA non-coding downstream 137618 8968289 ~ 8972773 (-)
G62519 NA non-coding upstream 295064 9408414 ~ 9414439 (-)
G62525 NA non-coding upstream 413277 9526627 ~ 9526966 (-)
G62564 NA non-coding upstream 589609 9702959 ~ 9703191 (-)
G62565 NA non-coding upstream 590026 9703376 ~ 9703598 (-)
G62567 NA non-coding upstream 595623 9708973 ~ 9709221 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 453105 8652304 ~ 8657286 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 460408 8647270 ~ 8649983 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 693838 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 877617 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 1422829 7677496 ~ 7687562 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 143893 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 587044 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 841331 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 882197 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 1131846 10245196 ~ 10248156 (-)

Expression


Co-expression Network