cpt2 (cpt2,LOC107668114,LOC107585892,LOC107731280,LOC107549124,LOC107695271)


Basic Information

Item Value
gene id cpt2
gene name cpt2,LOC107668114,LOC107585892,LOC107731280,LOC107549124,LOC107695271
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10316425 ~ 10320373 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247452.1
ttttgaaaaagtgcGATCTTTTGTCAGGCGGAAGTAATGAATCAAACATTAAAATCGAAGATTTTGTTGTGAATTTTGTCTGCTTGTTAAGCAACTAGTGAAAGCTATCTTGGGAAATCATTTTTGTTacgtttgttgttgttttttctaaacAGAAAGGTAAGGGAACGTAAGGAAATAGCTAATTATTGTTGGCCGTACCGACAGCGACAGGATCTGTCAGACACACTGCATTCATTCAGTGGGTTAGTAGCTTGCAGAACTGTTAAAGAGAAGGTTTGGAGTTGCAATTTAGGATACGCAGATCATAACTCCTTAAATTACAAGTTGTATAATGGCAGGGTTTCTCTCTACGCAATATAATACGACACTGagcaaattaaaacttttaggGAATAACCCTGCCCTCTCAGCTATAACGAGCACTCAGCGTAAATACAGCAGCAaggatggagctggtgttgggTATTTACACAAAAGTGTCGTCCCGACCATGCACTACCAGAAGAGTTTACCAAGATTGCCAGTCCCAAAATTGGAAGATACAATACGAAGGTATCTGGCAGCTCAGAAACCCCTGCTGAATGATGAACAGTACAGTAACACAGAGAAAGTAGCAAATGATTTCCAGAGTGGTGTAGGCAAGCAGTTACATGAAGAACTTGTGGCCttagacaaaaacaacaagcaCACCAGCTATATATCAGCTCCATGGTTTGACATGTACTTGTCTGCTCGGGAGTCTGTTGTGCTCAACTTCAACCCCTTCATGTCCTTTAACCCTGACCCCAAACCCGAGTACAACGACCAGCTTGTGCGAGCCACCAACATGGTGTGCTCTGCTGTCCGGTTCATGAAGACCCTTCGCGCTGGTCTACTCGAGCCAGAGGTGTTTCatcttaaccctgccaagagtGACACCGATAGTTTCAAGAGGTTGATCCGATGGGTGCCCCCCTCTATCTCATGGTTTGGAGCCTACATGGTGAACGCATATCCTTTGGATATGTCCCAGTACTTCCGCCTCTTCAATTCCACACGTATACCCAAGTACAAGCGCGATGAGCTCCTCACGGACGACAAGGGCCGCCACCTGCTCGTGGTAAGGCAAGGAAACCTGTATGTGTTTGATGCTCTGGATCGGGACGGCAACCTGATAAAGCCTGCCGAGGTGCAAGCTCATTTGAAATACATCTTATCAGACCCCACACAAGCTCCTTCGTTCCCCTTAGGCATTCTAACCAGTGAGAATAGAGACACCTGGGCAGGGTTAAGACAGAAACTACTGGATGCTGGAAATGGAGAAGCTCTGCATTTAGTAGACAGTGCTTTGTTCTGCCTCTGCCTGGATGAGGAGGTGATGAGAGACCATATTCACATCTCCCACAACATGCTTTACGGGGATGGCTGCAACCGGTGGTACGACAAGTCCTTCAGCATCATCTTGGCTAAAGACGGACAGGCTGCCATCAATTTTGAGCACTCTTGGGGTGACGGCGTGGCTGTTCTTCGCTTTCAGAATGAGGTCTTCAAGGACACCACGGAGAAGCCTTTGGTCGGGCCTGGATCCCAGCCTGCAGCCGTGGACTCTTCCTCTGCAGTGTGCAGATTAGAGTTTAAACTCACCGATGAGTTAAAAGCTGGAATCACAAAAGCAAAAGAGAACTTCCAGGCCTCCGTGTCAAAGCTCACCATCGACGCCATGGAGTTCAAGAAAGGTGGAAAGGAGCAACTTAAGAAGAAGAAGCTCAGTCCGGATGCCATCGCTCAGCTGGCTTTCCAGATGGGCTTCCTACGGCAATACGGCCAGACTGTCGCCACATACGAGTCGTGTAGCACTGCAGCCTTTAAACATGGCCGCACAGAAACCATCCGTCCTGCTACCATCCACACACAGCGTTGTGCCAAGGCATTCGTTGAGCAGCCCGGAAAGCACACTGTGGAACAGTTACAGGGGCTGTTGAGTGAATGCTCCAAATATCATGGGCAGCTCACTAAAGAGGCAGCAATGGGTCAAGGCTTCGATCGTCATCTCTTTGCCATGCGCTACCTGGCTAATTCAAAAGGAACGGCCCTGCACAGTCTCTACAAAGACCCAGCATATGCCGCCATAAACCACAACATTCTCTCCACCAGTACTCTTACCAGCCCTGCGGTCAGTCTGGGCGGATTTGCTCCGGTGGTGCCTGATGGTTTTGGAGTGGGCTATGGTGTCCATGATGAATGGATTGGATGCAACGTGTCCAGCTACCCTGCCAGAAATGTTCATGAATTCCTCAAGTGTGTTCACAAGTCCttggaagacatttttacagtgcTTGATGGAAAACCCATTAATTGAAAGTGCACTTAATGTGAAGTTCAGTGAAGCACTTTGGTAGGTGATATAGTCTGAATATAGAGCatttatgttttacttttattggaTGAGGACTCGAGTTTATCAGTGTAACGTTTTATCATTAAAGGCGCAAGGTAGAAGAAATACGCTTTGAACTGTGACTGCTTGGTATTGAACTCATGCTGAAGTGATTTGTCTAGAAATAAAACTTAGTAATTGTAATGGTTTAGTCTGGGAAATGCTGATGTCCTTACATTTATTGTCCCTTTGAGATTCAACAGGCAGCTTTAATCCACCTATACTTTCAGTGGGTATACTTTTACTCAGTGCAACATGAATACAGTGTACTTCAGTACGCTGCAAATTTCtgcattatgtaaaataattcaaagaCCTGCCCTGTGCcttataaaatgtaagaatgtGGATAACTATGAATactttaattgtaaatattgtaacaaCCTTAATAAAATATTGGATTGAAATGTG
>XM_043247453.1
ttgaaaaagtgcGATCTTTTGTCAGGCGGAAGTAATGAATCAAACATTAAAATCGAAGATTTTGTTGTGAATTTTGTCTGCTTGTTAAGCAACTAGTGAAAGCTATCTTGGGAAATCATTTTTGTTacgtttgttgttgttttttctaaacAGAAAGATTGCCAGTCCCAAAATTGGAAGATACAATACGAAGGTATCTGGCAGCTCAGAAACCCCTGCTGAATGATGAACAGTACAGTAACACAGAGAAAGTAGCAAATGATTTCCAGAGTGGTGTAGGCAAGCAGTTACATGAAGAACTTGTGGCCttagacaaaaacaacaagcaCACCAGCTATATATCAGCTCCATGGTTTGACATGTACTTGTCTGCTCGGGAGTCTGTTGTGCTCAACTTCAACCCCTTCATGTCCTTTAACCCTGACCCCAAACCCGAGTACAACGACCAGCTTGTGCGAGCCACCAACATGGTGTGCTCTGCTGTCCGGTTCATGAAGACCCTTCGCGCTGGTCTACTCGAGCCAGAGGTGTTTCatcttaaccctgccaagagtGACACCGATAGTTTCAAGAGGTTGATCCGATGGGTGCCCCCCTCTATCTCATGGTTTGGAGCCTACATGGTGAACGCATATCCTTTGGATATGTCCCAGTACTTCCGCCTCTTCAATTCCACACGTATACCCAAGTACAAGCGCGATGAGCTCCTCACGGACGACAAGGGCCGCCACCTGCTCGTGGTAAGGCAAGGAAACCTGTATGTGTTTGATGCTCTGGATCGGGACGGCAACCTGATAAAGCCTGCCGAGGTGCAAGCTCATTTGAAATACATCTTATCAGACCCCACACAAGCTCCTTCGTTCCCCTTAGGCATTCTAACCAGTGAGAATAGAGACACCTGGGCAGGGTTAAGACAGAAACTACTGGATGCTGGAAATGGAGAAGCTCTGCATTTAGTAGACAGTGCTTTGTTCTGCCTCTGCCTGGATGAGGAGGTGATGAGAGACCATATTCACATCTCCCACAACATGCTTTACGGGGATGGCTGCAACCGGTGGTACGACAAGTCCTTCAGCATCATCTTGGCTAAAGACGGACAGGCTGCCATCAATTTTGAGCACTCTTGGGGTGACGGCGTGGCTGTTCTTCGCTTTCAGAATGAGGTCTTCAAGGACACCACGGAGAAGCCTTTGGTCGGGCCTGGATCCCAGCCTGCAGCCGTGGACTCTTCCTCTGCAGTGTGCAGATTAGAGTTTAAACTCACCGATGAGTTAAAAGCTGGAATCACAAAAGCAAAAGAGAACTTCCAGGCCTCCGTGTCAAAGCTCACCATCGACGCCATGGAGTTCAAGAAAGGTGGAAAGGAGCAACTTAAGAAGAAGAAGCTCAGTCCGGATGCCATCGCTCAGCTGGCTTTCCAGATGGGCTTCCTACGGCAATACGGCCAGACTGTCGCCACATACGAGTCGTGTAGCACTGCAGCCTTTAAACATGGCCGCACAGAAACCATCCGTCCTGCTACCATCCACACACAGCGTTGTGCCAAGGCATTCGTTGAGCAGCCCGGAAAGCACACTGTGGAACAGTTACAGGGGCTGTTGAGTGAATGCTCCAAATATCATGGGCAGCTCACTAAAGAGGCAGCAATGGGTCAAGGCTTCGATCGTCATCTCTTTGCCATGCGCTACCTGGCTAATTCAAAAGGAACGGCCCTGCACAGTCTCTACAAAGACCCAGCATATGCCGCCATAAACCACAACATTCTCTCCACCAGTACTCTTACCAGCCCTGCGGTCAGTCTGGGCGGATTTGCTCCGGTGGTGCCTGATGGTTTTGGAGTGGGCTATGGTGTCCATGATGAATGGATTGGATGCAACGTGTCCAGCTACCCTGCCAGAAATGTTCATGAATTCCTCAAGTGTGTTCACAAGTCCttggaagacatttttacagtgcTTGATGGAAAACCCATTAATTGAAAGTGCACTTAATGTGAAGTTCAGTGAAGCACTTTGGTAGGTGATATAGTCTGAATATAGAGCatttatgttttacttttattggaTGAGGACTCGAGTTTATCAGTGTAACGTTTTATCATTAAAGGCGCAAGGTAGAAGAAATACGCTTTGAACTGTGACTGCTTGGTATTGAACTCATGCTGAAGTGATTTGTCTAGAAATAAAACTTAGTAATTGTAATGGTTTAGTCTGGGAAATGCTGATGTCCTTACATTTATTGTCCCTTTGAGATTCAACAGGCAGCTTTAATCCACCTATACTTTCAGTGGGTATACTTTTACTCAGTGCAACATGAATACAGTGTACTTCAGTACGCTGCAAATTTCtgcattatgtaaaataattcaaagaCCTGCCCTGTGCcttataaaatgtaagaatgtGGATAACTATGAATactttaattgtaaatattgtaacaaCCTTAATAAAATATTGGATTGAAATGTG

Function

symbol description
cpt2 Predicted to enable carnitine O-palmitoyltransferase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Is expressed in liver. Human ortholog(s) of this gene implicated in brain disease; lipid metabolism disorder; and muscular disease. Orthologous to human CPT2 (carnitine palmitoyltransferase 2).

NR:

description
carnitine O-palmitoyltransferase 2, mitochondrial

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0004095 carnitine O-palmitoyltransferase activity molecular_function

KEGG:

id description
K08766 CPT2; carnitine O-palmitoyltransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247452.1 True 2833 mRNA 0.45 5 10316425 10320373
XM_043247453.1 False 2471 mRNA 0.46 5 10316425 10320371

Neighbor

gene id symbol gene type direction distance location
tmco1 tmco1 coding downstream 16119 10298359 ~ 10300306 (-)
LOC122350862 aldh9a1,aldh9a1a.1,aldh9a1a.2,LOC107695268,LOC107668102,LOC108441636 coding downstream 19353 10291698 ~ 10297072 (-)
zgc:112962 LOC107695265,LOC107745796 coding downstream 25315 10284492 ~ 10291110 (-)
si:dkeyp-82a1.6 LOC107550035 coding downstream 32063 10280303 ~ 10284362 (-)
haus5 LOC107731222,LOC107585885,LOC107745798,LOC107695262 coding downstream 44428 10264841 ~ 10271997 (-)
gls2a gls2a,LOC107731259,LOC107668075,LOC107549149,LOC107745788,LOC107695273,LOC107585893 coding upstream 9403 10329776 ~ 10338669 (-)
LOC122349990 gpr37l1b,LOC107731282,LOC107668115,LOC107585901,LOC107695275,LOC107549203,LOC107745785 coding upstream 167417 10487790 ~ 10491200 (-)
LOC122349964 ela2l,LOC107745782,LOC107695279,LOC107549241 coding upstream 205974 10526347 ~ 10528717 (-)
LOC122349966 NA coding upstream 209070 10529443 ~ 10533338 (-)
LOC122350349 nphp4,LOC107695281,LOC107550077 coding upstream 506056 10826429 ~ 10961990 (-)
G62805 NA non-coding downstream 14540 10301662 ~ 10301885 (-)
G62800 NA non-coding downstream 51664 10263818 ~ 10264761 (-)
G62795 NA non-coding downstream 63169 10250633 ~ 10253256 (-)
G62789 NA non-coding downstream 159232 10156975 ~ 10157193 (-)
G62788 NA non-coding downstream 163520 10152239 ~ 10152905 (-)
G62817 NA non-coding upstream 5368 10325741 ~ 10327208 (-)
G62821 NA non-coding upstream 49960 10370333 ~ 10373331 (-)
G62824 cry1 non-coding upstream 61344 10381717 ~ 10443630 (-)
G62829 NA non-coding upstream 63347 10383720 ~ 10484599 (-)
G62831 NA non-coding upstream 111408 10431781 ~ 10434116 (-)
smim24 smim24,LOC107580287 other downstream 68269 10245196 ~ 10248156 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other downstream 274656 9995547 ~ 10041769 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other downstream 346940 9954681 ~ 9969485 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other downstream 607804 9700394 ~ 9708621 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other downstream 1053599 9257243 ~ 9262826 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other upstream 68810 10389183 ~ 10392043 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other upstream 120391 10440764 ~ 10480051 (-)
trnar-ccg_26 NA other upstream 219846 10540219 ~ 10540291 (-)
cep104 cep104,LOC107668088,LOC107745778 other upstream 652932 10973305 ~ 10990735 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other upstream 775767 11096140 ~ 11131238 (-)

Expression


Co-expression Network