b3gnt3.4 (b3gnt3,LOC107665060,LOC107599054,LOC107755313)


Basic Information

Item Value
gene id b3gnt3.4
gene name b3gnt3,LOC107665060,LOC107599054,LOC107755313
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6670280 ~ 6678153 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247585.1
GCTCAGCGTTTCCTCTAGAGAGAGTACCACTCGTGTGGATTTCCTCATCAGTTGGAGGTAGTCTGAGCTGTGAGTGCTGGGTGTGGATCGTGGTGTAAACTGATTTTAACATGAGCAGAAGCTCGCACTTTTGCAAAGAAGGGAAATAACCGACAGGTGCGGAGATGAGAAGGAAACGCTTGCAGATGATAGCATTACTTCTGACAGGTGTTGTGTGCCTGGTCATTATCGTGAACAAAAACGACTCAGAAAATGACGTGACGCTACAAAACGAAGACTTATACAAGGTGTTCCATCAACAAACCGATTTGCCCAGCTTTGAAACTCCCCAGCCTTCATCTTCACATTGTAATCCTAATATATCTGCTTATAATGTGAGTGGATTTTCTGATCTGCCAAATCATATCCAAGATTTTCTGCTTTACCGACACTGTAGGAGTTTCCCCATGCTTCTTGATGTGCCTAATAAGTGTGGCGGACCCCAAAACTCTGCAGATGTTTACCTCCTGCTGGTCATCAAGAGTTCTCCAGAGAATTATGATCGACGAGAAGTTTTGCGCAAAACATGGGCAAAGGAAAGATTGCACAAAGGCGTGCGGATCCGTAGAGTCTTCATAACCGGAACGAGTAAAACTGGCTTCGAAAAGAACAGGTTGAACACACTATTGAAGCTGGAGAACAGTGAGAACCAGGACGTTTTACAATGGGACTTCAATGACTCTTTCTTCAACCTCACACTGAAGCAGATTCTTTTCTTAGAGTGGATGGAAAGATGGTGCCCGAATGtcagatttcttttaaatggaGACGATGACATCTTTGCCAATACGTTTAACATGGTTGAGTATGTTCAAGGTCAGAAGGACAATGATGGAAGTAAACATCTCTTCGCTGGGCACCTCATCCAGAATGTTGGCCCTATCAGACAACAATCAAGCAAATACTTTGTCCCAGTGCAAGTGCAGGAGTCTGAAAGGTATCCTCCATATTGTGGTGGAGGAGGCTTTCTTCTCTCGGGCTTCACGGCCAAAACGATCTACGAGATGTCTCACTCTATTGATCTGCTGCCCATTGATGATGTTTACATGGGAATGTGTTTGGAAAAAGCTGGCCTCAAACCTGTATCCCACTTTGGCGTTAGGACCGCTGGTCTGCATGTCCCATCTATGAATGTGGACAAATTTCACCCTTGTTTTTACAGAGAAATCATTTTAGTCCACAGATTTCTGCCGCACATGATTTTTGTGATGTGGAATGAGATACAAAACCCATATTTGCAATGCGGAAGGATGAATTCCACGTTCAAAATCTGAACTGGGTGtttcattacttttaaaaggaaACATAATATCTTGCTGGAGTCAAttcaattaagttttttttttaaataatgagcTCTTTAAGATTCCTTTTTTAAACATGGTGAAAAGTTCTGAAACATGGTGTAGTTTAGTAAGATTATTGCCTCATGAAAAGTATGTGGTCTATTGCACTTTAAGTGGGAAGGGTGGTTGACTCCTTTCTCATCGATGGTAGTTATAGTCCTTGTGATcattatgcttatttttaaacaatgtcaAAGTGCTTCTctgtttactgtaaaaaaacaaacattttaattttaaggcaATCAGCTTCAGCAGTTTTCTTAACTTATTTGTGTAAGTATTTTCTCAACTTTTGTTTTACAAACTTAAAACAGGAAGTTGAGAAAACTGCTGAAgctacttttacattttacgttGGCTCAACTTTTTTGAAAAGTAGATATAGAAAcatctatatttttaaagtctAATTTTATTAGGGGAATTAAGCAGAATCTCAGGAAAAAAGTACCTTTCCAAAAGGAATGCTTTTGTGCTTCATTTACCCAAAAAATGTGGATATTAGTAACTAATTAACAACATTTGTAgctagggctgggcaatatatcaCACAATATATTGATGCGCATCTTGTCAGTAAATCACAGTTCTTTGATTAGCAGTAAATCAGCTGTTGTCAAATGGAGCAGatgttaatacacagagccataaATCACTGACTAGCTACGCaaagcttgtcagtgatctatggCTCTGCGTATCAAATGCctctccatttgaaaacagccGATGGAGATTTACCGTTAACCAAAGAACcactttactgacgagatgcgcGTTAATATATTGTGCAATTTATTGCCCAGCAATatttttaagcctttttttgTCTAAGATTGtgtaatatataagaaaatagcAGGATTCCATATATAAaatgactgctgaaaaaaagctgttttttacaTCTAAAGAGGAGTGTATTATGAAGTACAGTGCTTTgtgacaaaatacaaataattccAGCAGGGCTGGCCCAAGTTTTTATGGAGGCCTAAGCCGGACCCATCAATGTCTAAAATAGCCTAAAAGCTTGTTTGTTCATACAAATCTAACACACCCATggtcagttttgtttgttgtagtaTCATACTATTGTTAGCCTGTTATATTTTTACTCTTCTGTAATTTGTATAACACAATTGTAAACAAGTGTGGTCAAGTGTTAATTTGCACTAAATGTTATACTTTTGGTGTACtgaaaagtatatatttttatacagccCTGTTGCTACCAATAGAGTTCAGTGGAAATAACAACAACGACTATAGTTAGCTAACGATGGTTTTGAGAAAAATTACCCCTAATTAATTTGTCCCTCTCCACCCCCAAAACGCGACCAATTTAACCCTTTTGACGGCATGCTTTGTCTGACGCTGAGCCAGAGAAAGCTCCAAAAAAAAGACGCggaaacaacaaaataataaaatgacatgttcagattatttaatgatttaatattaatcttTCATATAACTACCATTTCCCTTTGACAAAATAGTCATTTCATACAGGCTACTCTTGGGGGCCCTAAGTAGCTGCTTAGTTCGCTTATGCCTTGGGCTGGCTCTGGTTTTATGATATGTCTGCTTTCatagaatatttatttgaaaaatatgttaCTTAGGAAAATGAATGCTCTTACTTTGATACGATACATTTCTTACTGTCAGCACTCCAAAAACATAACAACAGTACACGCATGCTGTATGTGAGAGCCATATCTGTATCATTTGATTTGAGTTGAAtcttgtttgtttcagttctttTGAATCAAAAGAATGTTTCGCAAAGAGCACTCTGTTATTACATTTGCAAAGCACAAAACTGAATTGCAACTGGAAAGCACACTGGACTATATGTTCATGTAAATTTCTATGTCAGATGTAAATTATTTGATAACttgtgtttttaacttttttcacaTTGTGAAATGAAATTGCGATACAGTTTGACAGAGCTTCAAAAGTCTGtgtgttcggtcttttccttGCGTTTCTTCACTtatcacttatatttattaatcttttgcttttccaatTCCTAATTCTGACCCTTcgcataattttatctgactccaatctttcgtgattttagatatatttaagtgtaactgctgatccctctagttgtgattaaatttggatcatttttactataataaattttatatactttttttaatacttccTAGCTTcaacttatcgttcgttaggagtctgggtcgcttagagaccttgtttggccagaacagactcacgacacatctgggctagtccaggtttTAGTCAGCAGCTAGCCCATAGATCGCTTActttaatgcagccatttccgcAATAggctcaaaaagagtaattttttatgcattcccAAAGttatagcatgctaagccagtttggtggccagaaatcaagatctcaaaaactgGCCTCCGGCTCCGTCCATTGATCATTGacctgactcaccctagcactccaacaatgcagaaaaacacagaagtcactaacctactagaataatgatttcagacaatattataagttaaccaagattaacgtttattttgccaggcaagaatatgttccaaattggtttaatttgtaaacatttgcacaactgatctgagtttttatgttaaagcttttttgcaacatttatttattactgttagTATCTTGAGCAAGCTATTGCAGCTGTAACTGCTAGCATCTTGAGCAAGTGTGTTACCTATTAACTCACTACTGTTACTGTACACAACTTTGGGAAAAGGAAACTCATGATGCTAGacgaaaaaaaagaagttactGAGAAAAGTTAGAAAAAAAGCAAGGCATGATGCATTCAGATTTTTCTGTTCTCTCAGTCGTCTTCTTAAATTGTACAAAGTAACACTACTTTGTTTGTTCACTGCTAAATGCGAAATGCATCATTGAGCCAATAAATTTGTTCAAACTCA

Function

symbol description
b3gnt3 Enables N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity. Involved in poly-N-acetyllactosamine biosynthetic process. Predicted to be integral component of plasma membrane. Predicted to be active in Golgi membrane.

NR:

description
PREDICTED: N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 3-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG:

id description
K07970 B3GNT3; beta-1,3-N-acetylglucosaminyltransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247585.1 True 4345 mRNA 0.37 2 6670280 6678153

Neighbor

gene id symbol gene type direction distance location
ccdc124 ccdc124,LOC107557177 coding downstream 26957 6636743 ~ 6643323 (-)
kcnn1b kcnn1,kcnn1b,LOC107557189,LOC107758025,LOC107598990,LOC107665010 coding downstream 34203 6603068 ~ 6636077 (-)
si:ch73-61d6.3 si:ch73-61d6.3,LOC107725329,LOC107665009,LOC107758028,LOC107699027,LOC107598988 coding downstream 72705 6587209 ~ 6597575 (-)
zgc:194990 zgc:194990,LOC107699042,LOC107557196,LOC107758027 coding downstream 83199 6576325 ~ 6587081 (-)
spag17 spag17,LOC107598987,LOC107664984,LOC107664968 coding downstream 134493 6522953 ~ 6535787 (-)
LOC122351102 LOC107755287,LOC107758020,LOC107665055,LOC107549659 coding upstream 1508 6679661 ~ 6690661 (-)
cabp4 LOC107598993,LOC107665077,LOC107755310,LOC107603028,LOC107699144 coding upstream 25895 6704048 ~ 6709965 (-)
serping1 LOC107665067 coding upstream 80051 6758204 ~ 6764605 (-)
igf3 LOC107755307,LOC107598996,LOC107665064 coding upstream 88813 6766966 ~ 6770484 (-)
si:dkeyp-110g5.4 LOC107665063,LOC107755306,LOC107599055 coding upstream 93019 6771172 ~ 6774736 (-)
G61663 NA non-coding downstream 11996 6657498 ~ 6658284 (-)
G61640 NA non-coding downstream 108362 6561450 ~ 6561918 (-)
G61629 NA non-coding downstream 118569 6551404 ~ 6551711 (-)
G61582 NA non-coding downstream 201864 6467953 ~ 6468416 (-)
LOC122350799 LOC107725298,LOC107598986 non-coding downstream 395070 6273884 ~ 6275210 (-)
G61782 NA non-coding upstream 183875 6862028 ~ 6862954 (-)
G61860 cacna1e,LOC107707593,LOC107657843,LOC107599003 non-coding upstream 596437 7274590 ~ 7281165 (-)
G61865 NA non-coding upstream 627959 7306112 ~ 7308340 (-)
LOC122350886 NA non-coding upstream 699602 7377755 ~ 7378459 (-)
LOC122350888 NA non-coding upstream 712135 7390288 ~ 7394209 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 227298 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 709174 5919961 ~ 5961106 (-)
G61513 NA other downstream 1052616 5614329 ~ 5617664 (-)
c8h9orf116 LOC107757294 other downstream 1060708 5605172 ~ 5609572 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other downstream 1159337 5476213 ~ 5510943 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other upstream 136318 6814471 ~ 6816747 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other upstream 197196 6875349 ~ 7056429 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other upstream 413297 7091450 ~ 7102993 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 999343 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 1438855 8117008 ~ 8232774 (-)

Expression


Co-expression Network