tmem47 (LOC107585845,LOC107717575,LOC107750585,LOC107548625,LOC107657933,LOC107699999)


Basic Information

Item Value
gene id tmem47
gene name LOC107585845,LOC107717575,LOC107750585,LOC107548625,LOC107657933,LOC107699999
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9284843 ~ 9292136 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247610.1
GCAGCAGAAATTTTTCAATAATGTGCAGTGCAGTCGCGTTCACAGGAGCGCGAGGGCAGCTGCTACAGCGTCCCTCTCGCGCAGCTGCTCCGCAATCTTCAAAACACTGAACGCGGATACGGATCCGAAAACATTACCTGGGATCGTCGTTCCTGGCTTCTCCGCGGCGCCGTGTAACCTCGCTCCTCATCACCGGAGCATCCAGCCGACATGGCCTCATCCGTGAGCGGAGCGGAGGAAGTGCGCGTGTCGGCGTTGACGCCCCTGAAGTTGGTGGGTCTGGTGTGTATTTTCCTCGCGCTGTGCCTGGATGTTGGGGCCGTGCTGAGTCCGGCGTGGGTCACCGCGGATGACCAGTACCACCTGTCCCTGTGGGAGTCGTGCAGGAAGCACGCTGCCTCCGTGGACTGGCTGTGCGACAGCACGTTGGGGCAGAAAGGGACCGACTGGCAGATCGCTACATTGGCTTTGTTGTTGGGTGGAGCGTTCCTTATCCTCCTTTCCTTCCTGGTGGCCCTGGTGTCTGTCTGCATCCGCTCCAGGAGACGCTTCTACCGACCGGTTGCTGTTATGCTCTTTGCCGCAGTGGTCCTACAGGCCTGCTGTTTGGTGCTGTATCCCATCAAGTTCATCGAGACCATCAGTTTGAGAATATACCACGAGTTTAACTGGGGCTACGGTCTGGCTTGGGGAGCCACCATCTTCTCCTTCGGAGGAGCGATTCTCTACTGCCTAAACCCCAAAAACTACGAAGATTACTACTAAACATGCTACAACACCCACAATGCACTTCAATGTCCTCTTCACTGTTGTAATAGCAGCTCATGCACTGAACATTCGTTCGGAACAGAACCTTGACTTTGTAAACGTACACAAAGAGCCTTGAAATGCAGGGCAATGCAGAGCTGTTAGATTTAGAGGTACATAGATTTCGATTCTTTTTCCCTCAGATTACTCGGATCACACAATTAAACCCCATCAAACTCTCATTCTTTTTCTGTatgtcatctctctctctcctcatgtCATTTTAACACCTCTGATCTTCTTCTGACTGTCAGATGAGCATCTGACTCCAGATGTCAGCCTATGTTCACAGGAATACTGCCAGTATGTGATGTAGTCAGTGGGGAAACCTCCATCTGTGGTGGGATCTGAAACAAGGCAGACAGAAGTCTACAATTCTGACAGAATAAAACTGTCGTGATAAACATGCGTTTTTGAGACCTGAAAGATACAAGATGGGTTTATAGGCAAAAAGTAAACTGTTTAGAGTACATCTGAGAACATAAGTTGAAATATCATGCAGCTTGAAATAAGAAACAGTGTTATTGGTAAAGAACCTTTCAGCCAAACTAAAGACATCTGTACAATTGCAAACTGGTCAAAAAAGACCTTATGCTAAATTGAGGTCACATTTGCAAAATGTTGCAGGTGAAAAACAGTCCAATATCAATAGCTTTAAGTCACATTTAAGTAGCTTCCTTTTGTTCAGAATGAGGAATTTGCATGACCAACTTAAATACGAGTGAAATCTGCCTTGTGAAAAACTCCCTGTCGCACTAATTCCTTTTGGAATGAATGGATTTCGCCACAAAGTTTCACTGATCAACAGTAAATCTTAGTAAAACATAATTACTTAACTTTTTAAGGTCAATACTGTCAACAGTGATGTATGAAGCACAATTCAcacagaagtcacttttaaaccAAACAGCTTGCTGTTGGCCAGTGTGGCGAATTTACATGACCAATCTGAACAAGTTGCGAAATATTTCACTCTCACAAGAAATATTCCTTTGCTTGGAATCCAACTGAAATTACCATTTCAAATGCGAAAACGTGACCACGCCTTTTTCCATAGATGTGCATCCAAGCATAATTGCTCTCATGTAACGCTaagaaaaactgttattttaagcaAAGGTCATGTACATAGCACATGAATCATCACCATACAGTTAATTTGTGCACATTTGGAAACATATTTACGCATATCTTGTATTCAGTTTAAAAGGGATTCGGTAGAAGATACTTTGCATTGTAGAAAACCTAGGTCTTGTGGTGTAACCAAGCCTTGCATATAGACTAGTTTTTTAACTGGTATCTGAAGAGTGATTTAGTCTTTTGCATAAGTATCCAAACAGGTAGTTAAAGGCAGACTgtagggttgtttttttttagcactgtCAGTCTGTTGTGTGCATGTTGTTGTGTCTGAATGAGGGCGCATGTAccatttgagtgtgtgtttgagtgattGCGTGCTTTCTGTTGGGATTTTTCTGTCCCAAATGCAGTTGTGACATATTGTACTAATTTATATACTAaccaaataaacatataaaaataa

Function

NR:

description
PREDICTED: transmembrane protein 47

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247610.1 True 2353 mRNA 0.44 3 9284843 9292136

Neighbor

gene id symbol gene type direction distance location
nexn nexn,LOC107717577,LOC107657915,LOC107750547,LOC107548557 coding downstream 12267 9263622 ~ 9272576 (-)
zgc:153738 zgc:153738,LOC107585835,LOC107657937,LOC107758266 coding downstream 46783 9232722 ~ 9238060 (-)
obscna obscna,LOC107657853,LOC107585905,LOC107758262 coding downstream 54741 9190061 ~ 9230102 (-)
dmap1 dmap1,LOC107758267,LOC107585836,LOC107657923,LOC107750524,LOC107699933,LOC107548533 coding downstream 94927 9184030 ~ 9189916 (-)
rnf220b rnf220b,LOC107585921,LOC107758263,LOC107700469,LOC107657852,LOC107549863,LOC107750994 coding downstream 120747 9134496 ~ 9164096 (-)
cpox cpox,LOC107657924,LOC107717573,LOC107585846,LOC107550392 coding upstream 8338 9300474 ~ 9305341 (-)
stap2b NA coding upstream 29126 9321262 ~ 9329188 (-)
sh3gl1b sh3gl1b,LOC107750655,LOC107700047,LOC107717567,LOC107548638,LOC107585850,LOC107657927 coding upstream 43546 9335682 ~ 9352554 (-)
rorca LOC107657922,LOC107750669,LOC107548667,LOC107585851 coding upstream 61532 9353668 ~ 9366787 (-)
sema6bb LOC107585853,LOC107717564,LOC107750685,LOC107657917,LOC107549930,LOC108413003,LOC107700081 coding upstream 86355 9378491 ~ 9490669 (-)
G62293 glis1,LOC102303521 non-coding downstream 199649 9082795 ~ 9085194 (-)
G62250 dio1,LOC107700640 non-coding downstream 246143 9030865 ~ 9038700 (-)
G62263 lrriq3,LOC107657910,LOC107585823,LOC107699824,LOC107548466 non-coding downstream 277738 9006834 ~ 9007105 (-)
G62262 NA non-coding downstream 278064 9006555 ~ 9006779 (-)
G62255 NA non-coding downstream 312070 8968289 ~ 8972773 (-)
G62519 NA non-coding upstream 116278 9408414 ~ 9414439 (-)
G62525 NA non-coding upstream 234491 9526627 ~ 9526966 (-)
G62564 NA non-coding upstream 410823 9702959 ~ 9703191 (-)
G62565 NA non-coding upstream 411240 9703376 ~ 9703598 (-)
G62567 NA non-coding upstream 416837 9708973 ~ 9709221 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other downstream 22017 9257243 ~ 9262826 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 627557 8652304 ~ 8657286 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 634860 8647270 ~ 8649983 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 868290 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 1052069 8117008 ~ 8232774 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 408258 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 662545 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 703411 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 953060 10245196 ~ 10248156 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other upstream 1097047 10389183 ~ 10392043 (-)

Expression


Co-expression Network