LOC122351041 (rpe65,rpe65c,LOC107657893,LOC107752442,LOC107700531)


Basic Information

Item Value
gene id LOC122351041
gene name rpe65,rpe65c,LOC107657893,LOC107752442,LOC107700531
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8463209 ~ 8467213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247879.1
CGGAGGAGGAGTTCTAAGACTTTGTGGCTGTTCCTGGGAACAGAACAGTTTTGGTTCACGCATACAGAGAGCATCTCACCTTAAACTCAGTTCAACATGGTCAGCCGTCTTGAACACCCAGCCGGTGgctataaaaaaatctttgaatcGTGTGAAGAGTTAGCTGAGCCCATTCCTGCTCGTGTCTCAGGCAAAATCCCTGCCTGGCTCACTGGCAGTTTGCTCCGTGTGGGCCCTGGGCTCTTTGAGATAGGAGATGAACCTTTTTACCACATTTTTGATGGCCAGGCTCTCATTCACAAGTTTGACCTGAAGGATGGACATGTCACTTATTACCGCAGATTTATCAGAACTGATGCTTATGTGAGAGCCATGACAGAGAAAAGGATTGTGATCACAGAGTTCGGTACCACTGCATATCCAGATCCATGCAAAAACATCTTTTCGAGGTTTTTTACTTACTTTCAAGGTATTGAGGTGACAGACAACTGCCTTGTCAACATCTACCCCATTGGTGAGGACTTCTATGCCTGCACGGAAACCAACTACATAACTAAAGTTGATCCTGATACCCTAGAAACAATAAAAAGGGTGGACCTTTGCAATTATCTCTCAGTCAATGGTGTGACAGCACATCCACATACTGAACCGGACGGTACTGTATATAACATTGGAAACTGCTTTGGGAAGAACATGTCATTGGCCTACAACATTATCAAGATCCCTCCACCACAAGAAGataaaTCTGATCAAATCGAGAAGTCAAAGGTTTTGGTGCAGTTTCCAAGCAGTGAGAGATTCAAACCATCCTACGTTCATAGttttggcatgACAGAGAACTACTTTGTGTTTGTTGAGACTCCAGTGAAGATCAATCTGCTGAAATTTCTGACTTCCTGGAGTGTCAGAGGGACAAATTACATGGACTGCTTTGAGTCAAATGACAAAATGGGTACATGGTTTCATCTGGCAACCAAAAATCCTGGAGAATACATTGGCCACAAATTCAGGACATCTgcttttaatcttttccatCACATTAACTGTTACGAGGACCAAGGCTTTATTGTTGTCGACCTTTGCACTTGGAAGGGGTATGATTTTGTGTATAATTATCTGTATTTGGCAAACATGAGGCAAAACTGGGAGGAAGTCAAAAAAGCAGCCATGAGAGCTCCACAGCCAGAGGTGCGACGATATGTGCTTCCACTTGACATTCACAGGGAAGAGCAGGGAAAGAATTTGGTTTCACTTTCATACTCCACAGCCACTGCTGTCATGTGCAGTGATGGAACCGTTTGGCTTGAACCCGAGGTTCTTTTCTCTGGACCGCGTCAAGcttTTGAGTTTCCTCAGATCAACTACAAAAAATACTGTGGGAAAAATTACACCTTCGCTTATGGACTTGGGCTAAACCACTTCGTTCCAGACCGGATTTGCAAGTTGAATGTGAAAAGCAAAGAAACATGGATATGGCAGGAGCCAGATGCCTATCCGTCCGAGCCACTGTTTGTGCAAAGCCCTGATGctaaagatgaagatgaaggagtTCTTCTGAGCATTGTAGTGAAACCAGGAGTCAGCCAGAGGCCAGCGTTCCTCCTCATACTCAATGCCACTGACCTGACAGAAATAGCACGTGCAGAGGTTGATATCATGATTCCTGTCACTCTCCACGGCATGTACAAACCTTAAACGACCAAAATCACGACTTTGTTTTTCAGCacgtagatttttttttttatgtatacagtGTTATTGTTGCCATTTTAAATGGGTCAGTTATATGACCTGATATGCTTGTAACACAACAGCTTTTGGATAATCATGTACAataagaaataaactttttacttCAGCA
>XM_043247880.1
GTGGGCCCTGGGCTCTTTGAGATAGGAGATGAACCTTTTTACCACATTTTTGATGGCCAGGCTCTCATTCACAAGTTTGACCTGAAGGATGGACATGTCACTTATTACCGCAGGTAGCTGTGTTTTAGATTTATCAGAACTGATGCTTATGTGAGAGCCATGACAGAGAAAAGGATTGTGATCACAGAGTTCGGTACCACTGCATATCCAGATCCATGCAAAAACATCTTTTCGAGGTTTTTTACTTACTTTCAAGGTATTGAGGTGACAGACAACTGCCTTGTCAACATCTACCCCATTGGTGAGGACTTCTATGCCTGCACGGAAACCAACTACATAACTAAAGTTGATCCTGATACCCTAGAAACAATAAAAAGGGTGGACCTTTGCAATTATCTCTCAGTCAATGGTGTGACAGCACATCCACATACTGAACCGGACGGTACTGTATATAACATTGGAAACTGCTTTGGGAAGAACATGTCATTGGCCTACAACATTATCAAGATCCCTCCACCACAAGAAGataaaTCTGATCAAATCGAGAAGTCAAAGGTTTTGGTGCAGTTTCCAAGCAGTGAGAGATTCAAACCATCCTACGTTCATAGttttggcatgACAGAGAACTACTTTGTGTTTGTTGAGACTCCAGTGAAGATCAATCTGCTGAAATTTCTGACTTCCTGGAGTGTCAGAGGGACAAATTACATGGACTGCTTTGAGTCAAATGACAAAATGGGTACATGGTTTCATCTGGCAACCAAAAATCCTGGAGAATACATTGGCCACAAATTCAGGACATCTgcttttaatcttttccatCACATTAACTGTTACGAGGACCAAGGCTTTATTGTTGTCGACCTTTGCACTTGGAAGGGGTATGATTTTGTGTATAATTATCTGTATTTGGCAAACATGAGGCAAAACTGGGAGGAAGTCAAAAAAGCAGCCATGAGAGCTCCACAGCCAGAGGTGCGACGATATGTGCTTCCACTTGACATTCACAGGGAAGAGCAGGGAAAGAATTTGGTTTCACTTTCATACTCCACAGCCACTGCTGTCATGTGCAGTGATGGAACCGTTTGGCTTGAACCCGAGGTTCTTTTCTCTGGACCGCGTCAAGcttTTGAGTTTCCTCAGATCAACTACAAAAAATACTGTGGGAAAAATTACACCTTCGCTTATGGACTTGGGCTAAACCACTTCGTTCCAGACCGGATTTGCAAGTTGAATGTGAAAAGCAAAGAAACATGGATATGGCAGGAGCCAGATGCCTATCCGTCCGAGCCACTGTTTGTGCAAAGCCCTGATGctaaagatgaagatgaaggagtTCTTCTGAGCATTGTAGTGAAACCAGGAGTCAGCCAGAGGCCAGCGTTCCTCCTCATACTCAATGCCACTGACCTGACAGAAATAGCACGTGCAGAGGTTGATATCATGATTCCTGTCACTCTCCACGGCATGTACAAACCTTAAACGACCAAAATCACGACTTTGTTTTTCAGCacgtagatttttttttttatgtatacagtGTTATTGTTGCCATTTTAAATGGGTCAGTTATATGACCTGATATGCTTGTAACACAACAGCTTTTGGATAATCATGTACAataagaaataaactttttacttCAGCA

Function

symbol description
rpe65c Enables retinol isomerase activity. Predicted to be involved in retinoid metabolic process. Located in cytosol and membrane. Is expressed in Muller cell; retina; retinal ganglion cell layer; and retinal inner nuclear layer. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 2; retinitis pigmentosa; retinitis pigmentosa 20; and retinitis pigmentosa 87. Orthologous to human RPE65 (retinoid isomerohydrolase RPE65).
rpe65 Enables all-trans-retinyl-palmitate hydrolase, 11-cis retinol forming activity and isomerase activity. Involved in detection of light stimulus involved in visual perception; retina homeostasis; and terpenoid metabolic process. Located in endoplasmic reticulum membrane. Implicated in Leber congenital amaurosis 2; retinitis pigmentosa; retinitis pigmentosa 20; and retinitis pigmentosa 87. Biomarker of basal cell carcinoma and squamous cell carcinoma.

NR:

description
PREDICTED: retinal Mueller cells isomerohydrolase

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0050251 retinol isomerase activity molecular_function

KEGG:

id description
K11158 RPE65; retinoid isomerohydrolase / lutein isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247879.1 True 1861 mRNA 0.43 14 8463209 8467213
XM_043247880.1 False 1648 mRNA 0.42 12 8463209 8466502

Neighbor

gene id symbol gene type direction distance location
osbpl9 osbpl9,LOC107699596,LOC107657891 coding downstream 5975 8431193 ~ 8457234 (-)
LOC122351130 NA coding downstream 33435 8429694 ~ 8429774 (-)
LOC122351131 NA coding downstream 33665 8429474 ~ 8429544 (-)
LOC122351132 NA coding downstream 33889 8429253 ~ 8429320 (-)
LOC122351128 NA coding downstream 34305 8428825 ~ 8428904 (-)
depdc1a depdc1a,LOC107657894,LOC107752443,LOC107599802,LOC107548279,LOC107699654,LOC107716419 coding upstream 1829 8469042 ~ 8476547 (-)
ndufaf2 ndufaf2,LOC107752447,LOC107743894,LOC107657848 coding upstream 11468 8478681 ~ 8480731 (-)
rab3c rab3c,LOC107599832,LOC107700568,LOC107743864 coding upstream 133782 8600995 ~ 8606166 (-)
skia ski,skia,LOC107548407,LOC107699765,LOC107657901,LOC107599811,LOC107710903 coding upstream 279674 8746887 ~ 8808599 (-)
prkcz prkcz,LOC107710919,LOC107743854,LOC107548418 coding upstream 353143 8820356 ~ 8911987 (-)
G62076 NA non-coding downstream 33074 8427285 ~ 8430135 (-)
LOC122351107 NA non-coding downstream 193992 8253538 ~ 8269217 (-)
G61967 NA non-coding downstream 489189 7879417 ~ 7974020 (-)
LOC122350891 NA non-coding downstream 508567 7951561 ~ 7954642 (-)
G61965 NA non-coding downstream 684645 7749703 ~ 7778564 (-)
G62120 NA non-coding upstream 40678 8507891 ~ 8508123 (-)
LOC122350893 NA non-coding upstream 244824 8712037 ~ 8739953 (-)
G62239 NA non-coding upstream 446269 8913482 ~ 8914004 (-)
G62235 NA non-coding upstream 451545 8918758 ~ 8920904 (-)
G62241 NA non-coding upstream 454268 8921481 ~ 8921696 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 46656 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 230435 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 775647 7677496 ~ 7687562 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 1360216 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 1406780 6875349 ~ 7056429 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 180057 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 185091 8652304 ~ 8657286 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 790030 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 1233181 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 1487468 9954681 ~ 9969485 (-)

Expression


Co-expression Network